mRNA_S-ischiensis_contig9.20665.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20665.1
Unique NamemRNA_S-ischiensis_contig9.20665.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20665.1 vs. uniprot
Match: A0A0P7BU34_9BACT (SdrD_B domain-containing protein (Fragment) n=1 Tax=Jiulongibacter sediminis TaxID=1605367 RepID=A0A0P7BU34_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 3.990e-5
Identity = 47/162 (29.01%), Postives = 70/162 (43.21%), Query Frame = -1 
Query:   38 CPPYSTVHAFSYVD-----------TADDTPGCNGKISGFMLKCLGGSCGQSTPGLN----KFNCSDNGPAGACCGPVPVTFTGKEGRGQISYTTSTPNRADDMIAVNAGDEVGSESTVTV--SCNGALVQTLEIHTSCSAAVTQGDVYSSLLLVTPFFDDG 472
            C PY      S VD           T +D      K   F+L+  GG+C +S         K+NC+ +G  G+    + V        GQ S T    N  ++    N G  + +   V++     G L+QT+ IHTSCSA +  GD + SL+L   +F +G
Sbjct: 1533 CGPYDAQEIVSVVDPTGEDCGPFIVTGEDACDNGDKPYKFVLQFNGGTCEESNNHQGDIGGKWNCTGSGTFGSSA-YISVN------NGQFSGTV---NLNEEFTVENGGSNLTNPIVVSLYDQQGGTLLQTVTIHTSCSAPIVLGDQFGSLVLTEAYFSNG 1684
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0P7BU34_9BACT3.990e-529.01SdrD_B domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2418866..2419460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20665.1prot_S-ischiensis_contig9.20665.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2418874..2419329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.6979535-UTR-S-ischiensis_contig9:2418865..24188731622817372.6979535-UTR-S-ischiensis_contig9:2418865..2418873Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2418866..2418873 +
1695741063.9811661-UTR-S-ischiensis_contig9:2418865..24188731695741063.9811661-UTR-S-ischiensis_contig9:2418865..2418873Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2418866..2418873 +
1622817372.7230334-UTR-S-ischiensis_contig9:2419329..24194601622817372.7230334-UTR-S-ischiensis_contig9:2419329..2419460Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2419330..2419460 +
1695741064.0039074-UTR-S-ischiensis_contig9:2419329..24194601695741064.0039074-UTR-S-ischiensis_contig9:2419329..2419460Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2419330..2419460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.712652-CDS-S-ischiensis_contig9:2418873..24193291622817372.712652-CDS-S-ischiensis_contig9:2418873..2419329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2418874..2419329 +
1695741063.9927685-CDS-S-ischiensis_contig9:2418873..24193291695741063.9927685-CDS-S-ischiensis_contig9:2418873..2419329Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2418874..2419329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20665.1

>prot_S-ischiensis_contig9.20665.1 ID=prot_S-ischiensis_contig9.20665.1|Name=mRNA_S-ischiensis_contig9.20665.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
MVRPMGQDGPPSSKKGVTRRRELYTSPCVTAAEHEVWISSVCTKAPLQLT
VTVLSDPTSSPALTAIMSSARLGVLVVYEICPLPSLPVKVTGTGPQQAPA
GPLSEQLNLFRPGVLCPQEPPRHLSMKPDILPLHPGVSSAVSTYEKACTV
E*
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mRNA from alignment at S-ischiensis_contig9:2418866..2419460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20665.1 ID=mRNA_S-ischiensis_contig9.20665.1|Name=mRNA_S-ischiensis_contig9.20665.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=595bp|location=Sequence derived from alignment at S-ischiensis_contig9:2418866..2419460+ (Schizocladia ischiensis KU_0333)
GGCTGCTGATGGTGCGCCCGATGGGGCAGGACGGCCCGCCATCGTCGAAG
AAGGGGGTGACCAGGAGGAGGGAGCTGTACACGTCACCCTGCGTGACCGC
AGCCGAGCACGAGGTGTGGATTTCCAGTGTCTGCACCAAGGCGCCGTTGC
AGCTGACCGTCACGGTGCTCTCCGACCCCACCTCGTCCCCGGCGTTGACG
GCGATCATGTCGTCCGCGCGGTTGGGGGTGCTGGTGGTGTACGAAATCTG
CCCCCTGCCCTCCTTGCCGGTGAAGGTGACCGGCACGGGCCCGCAGCAGG
CGCCCGCCGGCCCGTTGTCGGAGCAGTTGAATTTGTTCAGACCAGGGGTG
CTCTGCCCACAAGAGCCGCCCAGGCACTTGAGCATGAAGCCAGATATCTT
GCCGTTGCACCCGGGCGTGTCGTCAGCCGTGTCTACATATGAGAAGGCGT
GCACTGTCGAATAGGGGGGACAGACAAATCGCCGGTCAGTGGTGAGAAGG
AAAATGGAAACGGCCTGAGGTTTACGCTCGATCGCTCGCCTGCCAGACCT
AACTTAGCGCTCAGATAACGGCTACAATAAAAAGCAAAACTGAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2418866..2419460+

>mRNA_S-ischiensis_contig9.20665.1 ID=mRNA_S-ischiensis_contig9.20665.1|Name=mRNA_S-ischiensis_contig9.20665.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig9:2418866..2419460+ (Schizocladia ischiensis KU_0333)
ATGGTGCGCCCGATGGGGCAGGACGGCCCGCCATCGTCGAAGAAGGGGGT
GACCAGGAGGAGGGAGCTGTACACGTCACCCTGCGTGACCGCAGCCGAGC
ACGAGGTGTGGATTTCCAGTGTCTGCACCAAGGCGCCGTTGCAGCTGACC
GTCACGGTGCTCTCCGACCCCACCTCGTCCCCGGCGTTGACGGCGATCAT
GTCGTCCGCGCGGTTGGGGGTGCTGGTGGTGTACGAAATCTGCCCCCTGC
CCTCCTTGCCGGTGAAGGTGACCGGCACGGGCCCGCAGCAGGCGCCCGCC
GGCCCGTTGTCGGAGCAGTTGAATTTGTTCAGACCAGGGGTGCTCTGCCC
ACAAGAGCCGCCCAGGCACTTGAGCATGAAGCCAGATATCTTGCCGTTGC
ACCCGGGCGTGTCGTCAGCCGTGTCTACATATGAGAAGGCGTGCACTGTC
GAATAGATGGTGCGCCCGATGGGGCAGGACGGCCCGCCATCGTCGAAGAA
GGGGGTGACCAGGAGGAGGGAGCTGTACACGTCACCCTGCGTGACCGCAG
CCGAGCACGAGGTGTGGATTTCCAGTGTCTGCACCAAGGCGCCGTTGCAG
CTGACCGTCACGGTGCTCTCCGACCCCACCTCGTCCCCGGCGTTGACGGC
GATCATGTCGTCCGCGCGGTTGGGGGTGCTGGTGGTGTACGAAATCTGCC
CCCTGCCCTCCTTGCCGGTGAAGGTGACCGGCACGGGCCCGCAGCAGGCG
CCCGCCGGCCCGTTGTCGGAGCAGTTGAATTTGTTCAGACCAGGGGTGCT
CTGCCCACAAGAGCCGCCCAGGCACTTGAGCATGAAGCCAGATATCTTGC
CGTTGCACCCGGGCGTGTCGTCAGCCGTGTCTACATATGAGAAGGCGTGC
ACTGTCGAATAG
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