mRNA_S-ischiensis_contig9.20663.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 179 bits (454), Expect = 3.630e-49 Identity = 95/206 (46.12%), Postives = 133/206 (64.56%), Query Frame = 3
Query: 378 EEDRLSRVAEWERTRAEKDQAAKVEMARSLGVALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
+E RL A ER + + A++ G+ALPEDFND PT DK +S LP+ LPL+DSL+F H+F +P Q ++ +PL+A+L++YRS+PFSGL FFG+Q + A KPEVNKLVRFNLRQA+ LDIA+ FP+ A + V DS PLA +D +FV V+A + +S+ SSA+G++P +P++G MNR
Sbjct: 223 QEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQ-------WFAAKPEVNKLVRFNLRQAVILDIAMFFPSIFAFIITSV----LGEDSAKLAPLATVCNDVIFVTVVACVLYSIASSAIGVLPESLPILGKMNR 417
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.350e-46 Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 3
Query: 480 PEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
P D ND T DKA+S LP++LPL D ++FA HLF A+PEQ AWA+PL+A+L+ RS+PF+ L FF + V + P++NKLVRFN++QAINLDIAL+ P + ++ V +D+ PLA SD VFVA+LAA+A+SVG+SA G PNK+P++G +NR
Sbjct: 23 PGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGS-------SNPQINKLVRFNMQQAINLDIALILPGVVGAITGAV----LGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNR 183
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE) HSP 1 Score: 166 bits (420), Expect = 7.340e-46 Identity = 86/172 (50.00%), Postives = 116/172 (67.44%), Query Frame = 3
Query: 480 PEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
P D ND T DKA+S LP++LPL D ++FA HLF A+PEQ AWAQPL A+L+ RS+PF+ L FF + V + P++NKLVRFN++QAINLDIAL+ P + ++ V +D+ PLA SD VFVA+LAA+A+SVG+SA G PNK+P++G +NR
Sbjct: 105 PGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGS-------SNPQINKLVRFNMQQAINLDIALILPGVVGAITGAV----LGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNR 265
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA) HSP 1 Score: 169 bits (429), Expect = 9.940e-46 Identity = 99/204 (48.53%), Postives = 133/204 (65.20%), Query Frame = 3
Query: 387 RLSRVAEWERTRAEKDQAAKVEMARSLGVALPED-FNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
R +RV E +R +K A E+ G +P ND TA DKA+S LP+LLPL+D + FAGHLF A+PEQ AWAQPL A+L+ RS+PF+ L FF + L+G P+VNKLVRFN++QAINLDIAL+ P L +LA++ D+ PLA+ SD VFVA+LAA+A+SV +S+ G PNK+P++G +NR
Sbjct: 214 RQARVEERQRQMEDKLAA---EVGTGAGAVVPAGGVNDGPATAADKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSA-------LSGNPQVNKLVRFNMQQAINLDIALIVPGVLGALASV----SLGQDAYKLVPLAEAGSDVVFVAMLAAVAYSVVTSSTGSFPNKLPLLGRLNR 403
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI) HSP 1 Score: 166 bits (421), Expect = 1.470e-44 Identity = 86/175 (49.14%), Postives = 118/175 (67.43%), Query Frame = 3
Query: 471 VALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
V P D ND T DKA+S LP++LPL D ++FA HLF A+PEQ AWAQPL A+L+ RS+PF+ L FF + + + P++NKLVRFN++QAINLDIAL+ P + ++ V +D+ PLA +SD VFVA+LAA+A+SVG+SA G PNK+P++G +NR
Sbjct: 239 VVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSI-------WSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAV----LGSDASKLAPLANASSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNR 402
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI) HSP 1 Score: 152 bits (385), Expect = 1.940e-39 Identity = 89/194 (45.88%), Postives = 121/194 (62.37%), Query Frame = 3
Query: 378 EEDRLSRVAEWERTRAEKDQAAKVEMARSLG--VALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALG 953
E++RL+R+ E +R +K M G V P D ND T DKA+S LP+LLPL+D ++FA HLF A+PEQ AWAQPL A+L+ RS+PF+ L FF + + + P VNKLVRFN++QAINLDIAL+ P + + + AD++ PL+ SD VFVA+LAA+A+SVG+SA G
Sbjct: 213 EDERLARLEERQRQMDDK-------MRPDTGAVVVSPGDVNDGPATTADKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGS-------SNPRVNKLVRFNMQQAINLDIALILPGVVGA----ITGGMLGADAVKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 388
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.770e-32 Identity = 68/179 (37.99%), Postives = 110/179 (61.45%), Query Frame = 3
Query: 459 RSLGVALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
+ L D + T+L+KA+ LP++LPL D +++A H++S +P+Q AW++PL+A+L+ ++PF+ L AFFGM + L+ +NKL+RFN+ QAIN DIAL+ P+ L +D+ P+ A+D + V+++ A+A+S+ +SA G IPNKIP G +NR
Sbjct: 231 KMLSSVADSDREAASATSLEKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSI-------LSSNQNINKLLRFNMLQAINFDIALIVPSVFGPLLT----WSLGSDAYKISPVTDIATDILSVSLVLAVAYSIAASATGAIPNKIPFFGKINR 398
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A1Z5J9Q6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9Q6_FISSO) HSP 1 Score: 118 bits (295), Expect = 1.150e-26 Identity = 86/206 (41.75%), Postives = 116/206 (56.31%), Query Frame = 3
Query: 384 DRLSRVAEWERTRA-EKDQAAKVE--MARSLGVALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEQFAWAQPLLALLVV----YRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVI 980
++L +A ER +A EK + AK E ++R L + ND PT D+ VS LP+L PL+D L +A L + PL L +V YR+IPF G AFF + ++AGKPE+N+LVRFN +QAI LDIAL FP + L A++G LA+ +DA+F + AAI +SVGSS LGI P+KIP I
Sbjct: 144 NKLDALARDERAKALEKAKIAKQEADVSRLLEAQVAR-INDGPPTPTDRIVSVLPYLFPLMDGLQYASFLLLKNQDN-----PLAVLSLVTYTLYRAIPFGGFIAFFAL-------FYVAGKPEINRLVRFNTQQAIYLDIALFFPGLITGLFAILGGPVDPT-------LAEITNDAIFFTLAAAILYSVGSSLLGIYPDKIPFI 329
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI) HSP 1 Score: 117 bits (294), Expect = 2.060e-26 Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 AEGLRAEAAALQAQMNEEKQGAALHSFNTFDSNGDGQVDVAELRAGLERVLRRDFVKRPKARMGGVPPTARQVETKIAETPRGRLLPEQTLRKLLEAYDKNGDGVLQPEEFARTEELRARLEAIF 375
A RAEAA L+ + E++ A SFNTFDSN DG VDVAEL+AGLE LRR F K +ARMG P + +V+ +IA P G L P+ KL++ YD+NGDG+LQ EFA TEELR RLE +F
Sbjct: 85 AAAFRAEAAELEQKQARERRENAQRSFNTFDSNKDGSVDVAELKAGLEGPLRRSFTKTLQARMGRKP-SKEEVDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLF 208
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE) HSP 1 Score: 115 bits (288), Expect = 3.120e-26 Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 3
Query: 609 AWAQPLLALLVVYRSIPFSGLAAFFGMQVRTHASTFLAGKPEVNKLVRFNLRQAINLDIALLFPAALASLAALVGXXXXXADSLLTGPLAQTASDAVFVAVLAAIAHSVGSSALGIIPNKIPVIGAMNR 995
AWAQPL A+L+ RS+PF+ L FF + V + P+VNKLVRFN +QAIN+DIAL+ P + ++A V AD++ PLA SD VFVA+LAA+A+SVG+SA G PNK+P++G +NR
Sbjct: 177 AWAQPLAAVLLALRSVPFATLIGFFSLSVHRLRN------PQVNKLVRFNTQQAINVDIALILPGVVGAIAGAV----LGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNR 295 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20663.1 >prot_S-ischiensis_contig9.20663.1 ID=prot_S-ischiensis_contig9.20663.1|Name=mRNA_S-ischiensis_contig9.20663.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp MARSLGVALPEDFNDDTPTALDKAVSGLPFLLPLLDSLIFAGHLFSAYPEback to top mRNA from alignment at S-ischiensis_contig9:2396392..2397837- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20663.1 ID=mRNA_S-ischiensis_contig9.20663.1|Name=mRNA_S-ischiensis_contig9.20663.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1446bp|location=Sequence derived from alignment at S-ischiensis_contig9:2396392..2397837- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:2396392..2397837- >mRNA_S-ischiensis_contig9.20663.1 ID=mRNA_S-ischiensis_contig9.20663.1|Name=mRNA_S-ischiensis_contig9.20663.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig9:2396392..2397837- (Schizocladia ischiensis KU_0333)back to top |