mRNA_S-ischiensis_contig9.20653.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20653.1
Unique NamemRNA_S-ischiensis_contig9.20653.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2307836..2308406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.2615342-CDS-S-ischiensis_contig9:2307837..23079111622817367.2615342-CDS-S-ischiensis_contig9:2307837..2307911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2307838..2307911 -
1695741060.8029814-CDS-S-ischiensis_contig9:2307837..23079111695741060.8029814-CDS-S-ischiensis_contig9:2307837..2307911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2307838..2307911 -
1622817367.2729557-CDS-S-ischiensis_contig9:2308291..23084061622817367.2729557-CDS-S-ischiensis_contig9:2308291..2308406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2308292..2308406 -
1695741060.814494-CDS-S-ischiensis_contig9:2308291..23084061695741060.814494-CDS-S-ischiensis_contig9:2308291..2308406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2308292..2308406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20653.1prot_S-ischiensis_contig9.20653.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2307838..2308406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20653.1

>prot_S-ischiensis_contig9.20653.1 ID=prot_S-ischiensis_contig9.20653.1|Name=mRNA_S-ischiensis_contig9.20653.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=63bp
SARGAAAYESDETVEGFRVRRRGVRLGTGLALYHKFAQGLSHLDMLDDCP
GVALVFGQQETTV
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mRNA from alignment at S-ischiensis_contig9:2307836..2308406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20653.1 ID=mRNA_S-ischiensis_contig9.20653.1|Name=mRNA_S-ischiensis_contig9.20653.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=571bp|location=Sequence derived from alignment at S-ischiensis_contig9:2307836..2308406- (Schizocladia ischiensis KU_0333)
TCGGCGCGGGGGGCGGCGGCGTATGAGTCGGATGAAACCGTGGAGGGTTT
CCGCGTGAGGAGGCGGGGCGTGCGGCTTGGCACGGGGCTGGCGCTGTACC
ACAAGTTTGCACAAGGTGGGTGATGCGTTGTCCCTGTCCCGCGTGGTGGC
GAGAGCGATTCGCATGCATGCAAGTACTTTGGAGCGCTCGGAAGGGTACT
TCGGAGCACTCCAAAGGGTACCTCGAAGCACTGGAAGGGCACTTCGAAGC
ACTCGGAAGGGTACTTCGAAGCACTCGGAAGGGCACTTTGGAGCACTCAG
AAGGGTACTTCGAAGCACGCCAAAGGGGACTTCAAAGCAAATCCTGCTTG
GAAGTGTAACTTATGCACAACACATGTGGCCAAGGTGTGTCGGCGATGGT
CTCGGCGCTGCGTTCGGCACTGTCGAGGTATCTAAGTGACGTGGCCTGCA
CGTCAACCTGTGTCCTTCCTGTCAAACACCCCGCCGTCGGTGCAGGCCTC
TCCCATCTGGACATGCTGGACGACTGCCCGGGGGTGGCCCTCGTCTTCGG
CCAACAGGAGACAACGGTCAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2307836..2308406-

>mRNA_S-ischiensis_contig9.20653.1 ID=mRNA_S-ischiensis_contig9.20653.1|Name=mRNA_S-ischiensis_contig9.20653.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig9:2307836..2308406- (Schizocladia ischiensis KU_0333)
TCGGCGCGGGGGGCGGCGGCGTATGAGTCGGATGAAACCGTGGAGGGTTT
CCGCGTGAGGAGGCGGGGCGTGCGGCTTGGCACGGGGCTGGCGCTGTACC
ACAAGTTTGCACAAGTCGGCGCGGGGGGCGGCGGCGTATGAGTCGGATGA
AACCGTGGAGGGTTTCCGCGTGAGGAGGCGGGGCGTGCGGCTTGGCACGG
GGCTGGCGCTGTACCACAAGTTTGCACAAGGCCTCTCCCATCTGGACATG
CTGGACGACTGCCCGGGGGTGGCCCTCGTCTTCGGCCAACAGGAGACAAC
GGTCGCCTCTCCCATCTGGACATGCTGGACGACTGCCCGGGGGTGGCCCT
CGTCTTCGGCCAACAGGAGACAACGGTC
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