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Homology
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI) HSP 1 Score: 367 bits (941), Expect = 2.840e-124 Identity = 178/210 (84.76%), Postives = 197/210 (93.81%), Query Frame = 3
Query: 207 MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYCCG 836
M+ ++ EPYDHLFK+LLVGDAAVGKSSIMLRFTDDTFD+HLQSTIGVDFKVKM+DAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRP+TFDNL+KWLEEVETYHPGRGREVVKLLVGNK+DK+RVVTRA+AE YARSKGMLFLEASAKT+VG++QVF EVVQKIL+NP+LLANTAPGRPR T++P+ GGG CCG
Sbjct: 1 MTTRQAEPYDHLFKLLLVGDAAVGKSSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 210
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA) HSP 1 Score: 320 bits (821), Expect = 4.170e-106 Identity = 161/201 (80.10%), Postives = 174/201 (86.57%), Query Frame = 3
Query: 228 PYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYC 830
PYDHLFKILL+GDAAVGKSSIMLRFTDD+FD+ LQSTIGVDFKVKMM+ G K+IKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDV RP+TFDNLNKWLEEVETYHPGRGR+VVKLLVGNK+D R V R +AEA+ARSKGMLFLEASAKT VGI+Q F EVV KILE+PALLANT PG+PRT A G G C
Sbjct: 6 PYDHLFKILLIGDAAVGKSSIMLRFTDDSFDDKLQSTIGVDFKVKMMEVGDKKIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVERPETFDNLNKWLEEVETYHPGRGRDVVKLLVGNKVDCPRAVPREQAEAWARSKGMLFLEASAKTEVGIRQAFEEVVHKILESPALLANTTPGKPRTVDLAATQNTPPSGAGGC 206
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA) HSP 1 Score: 316 bits (809), Expect = 2.640e-104 Identity = 156/209 (74.64%), Postives = 181/209 (86.60%), Query Frame = 3
Query: 207 MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYCC 833
M++++ EPYDHLFK+LL+GDA VGKSSI+LRFTDD FD+H QSTIGVDFKVKM++ KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ++F+NLN WL+EVE Y G GRE+VK+LVGNK+DK+R+V R EAEA+ARSKGMLFLEASAKTR GI+QVF EVVQKIL+NP+LL NTAPGRPR +N AA G GGYCC
Sbjct: 1 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKGSGGYCC 207
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC) HSP 1 Score: 306 bits (785), Expect = 1.310e-100 Identity = 155/211 (73.46%), Postives = 177/211 (83.89%), Query Frame = 3
Query: 207 MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPA---HAGAAGGGGGYC 830
M Q+ + YDHLFK+LLVGDA VGKSS++LRFTDDTFD+HLQSTIGVDFKVKMM GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL WL+EVE Y P GR+VVKLLVGNKIDK+RVV+R E EA+ARSKGMLF+E+SAKT++GIQQVF EVVQKIL+NPALLANTAP +N + +A A GGG C
Sbjct: 1 MDAQEVDSYDHLFKLLLVGDAGVGKSSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYAPHANAGGGCC 211
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT) HSP 1 Score: 301 bits (770), Expect = 1.780e-98 Identity = 153/200 (76.50%), Postives = 174/200 (87.00%), Query Frame = 3
Query: 231 YDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYC 830
YDHLFK+LL+GDA VGKSS++LRFTDDTFD++LQSTIGVDFKVKMM GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL+ WL+EVE Y P GR+VVKLLVGNKIDK+RVV+R EAE +ARSKGMLF+E+SAKT++GIQQVF EVVQKILENPALL+NTAP R R A A +GGG G C
Sbjct: 4 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RSRGRKLDAKAEKSGGGNGCC 202
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: K3WMM1_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WMM1_GLOUD) HSP 1 Score: 300 bits (768), Expect = 3.700e-98 Identity = 153/205 (74.63%), Postives = 174/205 (84.88%), Query Frame = 3
Query: 225 EPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAG--GGGGYCC 833
+ YDHLFK+LL+GDA VGKSS++LRFTDDTFD++LQSTIGVDFKVKMM GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL+ WL+EVE Y P G++VVKLLVGNKIDK+RVV+R EAE +ARSKGMLF+E+SAKT++GIQQVF EVVQKILENPALL T RPRT +G G GGGG CC
Sbjct: 2 DKYDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGKDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLGTT---RPRTNDRATLSGKDGKSGGGGGCC 203
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: W7UBM5_9STRA (Rab family gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBM5_9STRA) HSP 1 Score: 305 bits (781), Expect = 1.200e-97 Identity = 151/202 (74.75%), Postives = 176/202 (87.13%), Query Frame = 3
Query: 207 MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAG 812
M++++ EPYDHLFK+LL+GDA VGKSSI+LRFTDD FD+H QSTIGVDFKVKM++ KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ++F+NLN WL+EVE Y G GRE+VK+LVGNK+DK+R+V R EAEA+ARSKGMLFLEASAKTR GI+QVF EVVQKIL+NP+LL NTAPGRPR + A A A G
Sbjct: 57 MAVREPEPYDHLFKLLLIGDAGVGKSSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPRVNLQ-ADAAAKG 257
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A6A3N672_9STRA (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N672_9STRA) HSP 1 Score: 299 bits (765), Expect = 4.010e-97 Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 3
Query: 231 YDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYC 830
YDHLFK+LL+GDA VGKSS++LRFTDDTFD++LQSTIGVDFKVKMM GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL+ WL+EVE Y P GR+VVKLLVGNKIDK+RVV+R EAE +ARSKGMLF+E+SAKT++GIQQVF EVVQKILENPALL+NTAP R R A +GGG G C
Sbjct: 44 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRGRKLDGKAEKSGGGSGCC 242
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A6G0KMK3_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0KMK3_9STRA) HSP 1 Score: 299 bits (765), Expect = 7.150e-97 Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 3
Query: 231 YDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYC 830
YDHLFK+LL+GDA VGKSS++LRFTDDTFD++LQSTIGVDFKVKMM GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL+ WL+EVE Y P GR+VVKLLVGNKIDK+RVV+R EAE +ARSKGMLF+E+SAKT++GIQQVF EVVQKILENPALL+NTAP R R A +GGG G C
Sbjct: 61 YDHLFKLLLIGDAGVGKSSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAP-RNRGRKLDGKAEKSGGGSGCC 259
BLAST of mRNA_S-ischiensis_contig9.20630.1 vs. uniprot
Match: A0A485LUC0_9STRA (Aste57867_25090 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LUC0_9STRA) HSP 1 Score: 295 bits (756), Expect = 2.970e-96 Identity = 147/209 (70.33%), Postives = 172/209 (82.30%), Query Frame = 3
Query: 207 MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFKVKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGMLFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGAAGGGGGYCC 833
M E YDHLFK+LLVGDA VGKSS++LRFT+DTFD+HLQSTIGVDFKVKM+ GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL+ WL+EV+ Y P GR+VVKLLVGNKIDK+R V+R E EA+AR+KGMLF+E+SAKT+ GIQQVF EVVQKIL+NP+LL+NTAP I+ + +AG CC
Sbjct: 1 MEQSAVESYDHLFKLLLVGDAGVGKSSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDTWLQEVQVYSPANGRDVVKLLVGNKIDKERAVSRKEGEAWARTKGMLFVESSAKTKTGIQQVFNEVVQKILDNPSLLSNTAPKSRAKKIDLSERTSAGATSTGCC 209
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 365.9 |
| Seed ortholog evalue | 1.2e-98 |
| Seed eggNOG ortholog | 2880.D7G245 |
| Preferred name | RAB18 |
| KEGG ko | ko:K07910,ko:K07976,ko:K17506 |
| GOs | GO:0000166,GO:0001654,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006913,GO:0006955,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008092,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0023052,GO:0030141,GO:0030659,GO:0030667,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034389,GO:0035556,GO:0036094,GO:0036230,GO:0042119,GO:0042175,GO:0042579,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060322,GO:0065007,GO:0071782,GO:0071786,GO:0071840,GO:0071944,GO:0080115,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:1901265,GO:1901363 |
| EggNOG free text desc. | myosin XI tail binding |
| EggNOG OGs | KOG0080@1,KOG0080@2759 |
| EC | 3.1.3.16 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01009,ko04031,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Rab18, RAB family GTPase |
| Ec32 ortholog | Ec-09_003840.1 |
| Exons | 6 |
| Model size | 1225 |
| Cds size | 633 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817390.7828655-UTR-S-ischiensis_contig9:2052793..2053179 | 1622817390.7828655-UTR-S-ischiensis_contig9:2052793..2053179 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2052794..2053179 - |
| 1695741078.3492644-UTR-S-ischiensis_contig9:2052793..2053179 | 1695741078.3492644-UTR-S-ischiensis_contig9:2052793..2053179 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2052794..2053179 - |
| 1622817390.866473-UTR-S-ischiensis_contig9:2060552..2060758 | 1622817390.866473-UTR-S-ischiensis_contig9:2060552..2060758 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2060553..2060758 - |
| 1695741078.4340148-UTR-S-ischiensis_contig9:2060552..2060758 | 1695741078.4340148-UTR-S-ischiensis_contig9:2060552..2060758 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2060553..2060758 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817390.7946675-CDS-S-ischiensis_contig9:2053179..2053345 | 1622817390.7946675-CDS-S-ischiensis_contig9:2053179..2053345 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2053180..2053345 - |
| 1695741078.3651998-CDS-S-ischiensis_contig9:2053179..2053345 | 1695741078.3651998-CDS-S-ischiensis_contig9:2053179..2053345 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2053180..2053345 - |
| 1622817390.8071496-CDS-S-ischiensis_contig9:2054548..2054691 | 1622817390.8071496-CDS-S-ischiensis_contig9:2054548..2054691 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2054549..2054691 - |
| 1695741078.374088-CDS-S-ischiensis_contig9:2054548..2054691 | 1695741078.374088-CDS-S-ischiensis_contig9:2054548..2054691 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2054549..2054691 - |
| 1622817390.8215065-CDS-S-ischiensis_contig9:2056431..2056484 | 1622817390.8215065-CDS-S-ischiensis_contig9:2056431..2056484 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2056432..2056484 - |
| 1695741078.3837337-CDS-S-ischiensis_contig9:2056431..2056484 | 1695741078.3837337-CDS-S-ischiensis_contig9:2056431..2056484 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2056432..2056484 - |
| 1622817390.8341453-CDS-S-ischiensis_contig9:2057734..2057836 | 1622817390.8341453-CDS-S-ischiensis_contig9:2057734..2057836 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2057735..2057836 - |
| 1695741078.4008508-CDS-S-ischiensis_contig9:2057734..2057836 | 1695741078.4008508-CDS-S-ischiensis_contig9:2057734..2057836 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2057735..2057836 - |
| 1622817390.8447385-CDS-S-ischiensis_contig9:2059169..2059258 | 1622817390.8447385-CDS-S-ischiensis_contig9:2059169..2059258 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2059170..2059258 - |
| 1695741078.4118218-CDS-S-ischiensis_contig9:2059169..2059258 | 1695741078.4118218-CDS-S-ischiensis_contig9:2059169..2059258 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2059170..2059258 - |
| 1622817390.8552659-CDS-S-ischiensis_contig9:2060472..2060552 | 1622817390.8552659-CDS-S-ischiensis_contig9:2060472..2060552 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2060473..2060552 - |
| 1695741078.4225888-CDS-S-ischiensis_contig9:2060472..2060552 | 1695741078.4225888-CDS-S-ischiensis_contig9:2060472..2060552 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2060473..2060552 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20630.1 >prot_S-ischiensis_contig9.20630.1 ID=prot_S-ischiensis_contig9.20630.1|Name=mRNA_S-ischiensis_contig9.20630.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=211bp
MSMQKTEPYDHLFKILLVGDAAVGKSSIMLRFTDDTFDEHLQSTIGVDFK VKMMDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTF DNLNKWLEEVETYHPGRGREVVKLLVGNKIDKDRVVTRAEAEAYARSKGM LFLEASAKTRVGIQQVFAEVVQKILENPALLANTAPGRPRTTINPAHAGA AGGGGGYCCG* back to topmRNA from alignment at S-ischiensis_contig9:2052794..2060758- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20630.1 ID=mRNA_S-ischiensis_contig9.20630.1|Name=mRNA_S-ischiensis_contig9.20630.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7965bp|location=Sequence derived from alignment at S-ischiensis_contig9:2052794..2060758- (Schizocladia ischiensis KU_0333) AAAACGCGCCCGCACGGGACCTCCGGGGGAAGGCGTGGCCCAGCTCCACT
GACTGCCCACGACAGCGGCGAGGGTGAGGGTCGTGAGCAGCGGGACCTGT
CGGTTTTTGTTGCTGAGCTCGATCGAAGAAGCGCAATCCAAGAAACGGCC
GCGAGCGCGGGCCGGCGCGCTGTGGCGGCGTCCCCCCACAGCGGCGCGAA
ACCGTGATGTCGATGCAGAAGACTGAGCCGTATGACCACCTGTTCAAGAT
TCTCCTCGTGGGAGATGCCGCCGTGGGCAAAAGCAGGTGCGCAATGTTGT
TGGCCCACGTGGCATACCGCCGCGAGCCCACCCAGCTGCGCGATTCCCGG
AGGGTGGTGCCCCAGCCTCGGCTTGGGCACACCAGTCCCGTCCGTTGCGG
ACCTGACATGGTGCCAGTTCCTCGTTTGACACGCTCAGATAGCATGGGAT
CGCCGCCCCTACCACGGCAGCAGGCCCACCTTGGGCACGGCTATTGCCCG
CACCTCGCTGTTTCAAACAACGCAGCCATGTGTGCATATATCCGCTTGCT
GCAGTAGTCGCAGCAAACCACAGGGGATTTCCGAGTGCCTCATGACTCGC
TCACTAGGACATCACGTGACCGCGAGAGACTAAGGCCTGGGCCCTCCCCC
GATCCCTCTCCATCTGTGTGTGTACCTGCGCATATCTCCGTTTCCCATCT
CCCCCCCCGAACACTCTCCCTCTCCCGCTCTATCTCTCCCTCTTCAGTTT
CAAACTCTCACGACCCTCTCTCTCGCCCCCCCTCCCCATCCCTCCCTCTC
TCCCTTCCCCTCTGTCTCTGTCTCCCTCCCCAGTCCCAAATCCCCGTTAC
ACACCCAATATACGTACTCTACTCGAGTACTCCCCACAGACATTAGAACC
CAGGCCGTCCCGCTGGGTCTCCCCTTATGGGCCGCGTTGTCAATAGTCTT
TATGGCCGCGGCAAGCAGTTGATGACTTCACCCCGCCCATCCTCGCTTGG
GAGATGAAACTGGTCTGAGGATGCATGGAGTCCTTCCAGTTGGTACGATC
GCAGGACACTTTCTGCTTTGCCTGTCATGACATTGGTAACTAAGAACGGT
GAGATTGGCTGCGACCAGCTTTCCCAAACAATAATGGGGACGGTTCTCGC
CCGTATCACATCCAGTGCCGCCCCCCCTCCCTCCTACCGGTGGCCTCCTT
GCCCTGCCACCCTCTAACGACACCATCGTCCCACCCTCCCTCCCTCTGAC
CAATGAACGGGCCTCCCTCCCCTACCCCGACCAATGAACAGGACTCCCTC
CCCTACCCTGACCAATGAACGGGCCTCCCTCCCGTACCCTGACCAATGAA
CGCGCCTCCCTCCCGTATCCTGACCAACGAACGGGCCTCCCTCCCCTACC
CGGACCAATGAACTGCCCCTACCCTGACCAATGAACTGCCCTCCCTCCCC
TACCCTGACCAATGAACGGGCCTCCCTCCCTCCCCTAACCCCTGCCGCAG
CATCATGCTGCGCTTCACGGATGACACGTTTGACGAGCACCTTCAGAGCA
CCATCGGGGTGGACTTCAAGGTCAAGATGATGGACGCAGGTGAGTGATGG
AAATCCAAGTAGTTATTGATATTCGATAGTTTGACATGCACTAAATCGAA
GTAGTTAGTAGTATTCGATAGTGGTACCTTCAGAGCACCATCGGGGTGGA
CTTCAAGGTGAAGTGGTGGATGCAGGTGAGTGATGGAAATCCAAGTAGTT
AGCGATCTTTGACATGCAATAATTCTGAGTAGTTGCTGTAGTAGTATTCG
ATAGTGGTACCTTCAGAGCACCATCGGGGTGGATTTCAAGGTGAAGATGA
TGGATGCAGGTGAGGGAGGAGATGACATCCATTGGTCGGGGGGAGGGAGG
GAGGCAGTGATGGAATATCTAAGCAAATTAACCTCAGTACTGATCTATAT
ATCTATCGGTAGTCGATATTCGATAGTTTGATCCACACTAAATCCGAGTA
GTTCGTAGCGCCACCCAGAAAATGAGTCGAGCCCGATAGCTCTCTACTGA
TTGATATTCCATCACTGGAGGGAGGGAGGGAGGGAGGGCGGGGTGGTGGA
TTGGTCGCCGGGGGGGAGGGCAAGGAGGTGATTGGACGGAGGGAGGGAGG
GAGGGAGGGACGGCGAGGTGGTGAAACAAGTAGTCTCTCAGCAGCTAGCC
GCATCTGCAGGTAGGCAGAGAGACCCAGAAGGCTAGCAGTAGCTGCAGGG
GAGCAGAAAGAAGTGGCCTATAATGCAAATGCCTCGACCGATTGGTCGCC
GGGGGGAAGGGCAAGGAGGTCATTGGACGGAGGGAGGCGGGGCGATGTGG
TGACTGGGCCGTGTGCTGCGTGCTGTGCTCTTCTGTGTACGGTCGTGTTC
AGTTTGGCTTGGTCGGCGAAGAAGCCAATCCAACGTGCGTGCCCGTGGGG
ACGCGAGGGCCGGTGGCTACATTGTTGTTACGCTTTTTGCCATTATTGTA
TCTTGCGGAGGGCCGTTGCACGCTCATCCCACTAAGTGCAGCGCTCGTAC
AGTTCACAGTATATACGTGGCTAAATAGCTGCTCCCGCGGAGGGCACACC
CAGGGGAAGTTTCGACTCAGGGCTGTCGGCATTGCACGCAAGCTTATGTC
CCAAGACAAGCCAATGAGTACTGTACATATATACTGGCGAGTGACGCTCG
CAGTAGGTCCCAAGAATATATATACTTGCGACACAACCCTTGTTGCCTGC
ATTGCCGGCAGCCCTAACTCGAAACTCCCCCGGGGTTTGCCCGTCGACAG
GAGTAGCTATTTAGCCATGGACTCCCCCTCTCTCGCACATACACACTCAC
TCTCTCGCACACACACTCGCTCGCTCGACCCCCCCTGCCCCCCTCCACCC
TCTTATGGCCGGCTGCGTGCAGGAGGCAAGCGGATAAAGATGACCATTTG
GGACACCGCGGGACAAGAGCGCTTCCGGACACTCACCAGCTCATACTACC
GAGGGGCTCAGGGAATCATGCTTGGTGCGTACTTTACTACTGTACTCGTA
GTAGATCGTGCCCCTGTTCGTCGCTGCTATATTTTGGAGTGCTTCGAAGT
GTAGACATGTGTACTTGGATATATACTACGTAGTATGATGGAGTGCCCCC
AATACGATGCCGCCAGAGTGGCCCTACATGCAGCGCTCAAAGCCGTCCTC
CGGGAAAATATTGACAAATGTTTTAGGAACTCAACCCCTCGCCATCAGGT
CATCACCCTCCTGGATCCATCAGGTGAGACGTCTGGTTGGCCAGAGGAGG
GGCAGAGTCGGATAGAGCGTGCTGTGAAAGCTTTTCTTGTGTCGGTGTGG
AGTGCCCGGTTGGAGCGAGTAGGTACCGTAGATGGGTATCTTGGATCTCC
TCCCGCCGTGTCCCGGCACGGCGAGGGAACCCCCTCTCCCGCTAGGCCTA
GGTCTAGCAGGGGAGGCCCCCCCCCCACCCGGACTCTCACGAGTCCGGGA
TGGGGGGGGTATGGACTTGGCCGCCCCTCCGCCTCTGGCGGGGGGGTGGC
CACCCCCTCCAACCCTGGCTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGT
CTCGCACGAGGCACGGGGTCAGTGGTCTCGGGACTACGGCAAGCACCTAC
ATAGTACATAGTATACCAGTGTTTTTGTACCATCAAAGCAGAGGGAGAAT
GATCCGCCGTCGACGGCGCTATAGTGGTCAATGGTTTCGGGACTACGGCA
AGCCCAAGGTGAATGCACATGTGCATGCAGTTCTCACACTGATAGCGTGC
ACTTGACGGTGCGGAAGTGCTGCTGCTAGAGTCGTCAATTGGCTGGACAA
ATGAGTCTTTTTGCAACGGGCTGCAAGCCCAAAGTGTTGAATATTCTCTC
ACTCACCGGCGTATGTACTCTTAACTACGTAGTGCGACACAATATGACGT
CACCTCACATGGCTCCAAAATCGGGACCTCACCAGAATACAGTTTACTCT
TTCTTTTTCACTCGCAGGGCTCTAAAACAGAAGAGCAGGGGATGGCAGAG
CGGCGATCTATTGCGCCACATCGTGGGATGAGTGCCGTGCTTCGATCGTG
ATGTGATGTGATGTTGAACCACTGTTGTTTCCCCTCCTTTCTCTTGCTCC
TCCCCCCCTTCCCCACACACTCCTTCCATGGCGAGCTGAGGAAAGACCGC
TGTTGAGGTCTTTTGTGACGTGGCCCGCACCTAATATAGCCCTGTCCCCC
GGCCCCCTGGCTTGGCGACATCAGTCTACGACGTCACACGTCCAGATACA
TTTGACAACCTCAACAAATGGCTCGAGGTGGGTCAGCCTTCGGTAGTCAG
TGTACAAGTACAGTGGTAGACTTTGGCGCTGGCGTGCTGTGCTTGAGCTC
ATCTCTGTAGCTGTACTGTGTATACTATGGTAGTGTATGTACTCACGTTG
TGCTTGTCCTAGTCCCGAGGCCATTGACCACGCGCCTCGGTCGAGACGGA
GCAGTGCAGATTTGAAATAGGCGAGGTGCGCCCCGTCGTCACGACGTAGT
GACCTTGACCGCGGGCCTTGGGCCTTCCTCTGGAGTACTGATTTGATGTG
GTTTGATGTGATTTGATTTGATTTGATGTGATGTGTTGTCCCACCTATTG
TGTGGAAAGAAAAGAAGCGAGTGGAAATTGACGTGATCCTACTTTTGTGA
GTTCCGGGCCCTGACACGGAAGCCCGTCCTTCACCCGCCTTCAATCGCAG
GGCGAATCATATAAAGAACATGAAGTGATGTGATGTGATGTGATGTGCAC
TCTAATTCACTGTAGTTTCACATCACATCACATCGAATCACATCACATCA
CTTCACATCCAAGAAGCCCGTCCTTCAACCGCCTTCACTCGCAGGGCAAA
TACAGTAGAAAGAAACGGGATGTACCCCCTACTGCACTGCAGTGTTGAAA
TCACATCGCTGATGATTGGAGGCCCAGCGCAGACTATGCTGGGCCGACGG
CCGGTGGCATGCACAGGACACAGGGTCGGTGGCTTGTGCAGGGCACGGGG
TAAACCTGTCCGACGTGAGTAGATTCTGTGATGTGATGTGTACTCTTATG
TGCAGTAGTTTGACATCACATCACATCGCATCGCATCAAAGTCCAGCATG
CAGAGGACACGGGGTGACCCTGTCCGACGTGAGTAGATGCTGTGATGTGA
TGTGATGTGATGAGTACTCTCGTGTGCAGTAGTTTGACATCACATCACAT
CATAACATATCGCATCAAAGTCCCGCATGCACAGGACACAGGGTGACCCT
GTCCGATGTGAGCAGATACTGTTGGTGTGATGTGATGTGTACTCTAATGG
TCTGTGGAGTACGGCAAGCTCAACACGAGGACATACACTATATGGTTTGA
ATTACATGTAGCCTCCCAACTACACTGGACATTTTGAAATGAAGTCCCCC
TAGCTACTTGGGTTGTTTGCATCGCAAGTCTCTACTACTGTAGTATAAGT
ATTTGAATTGTTTGAACAATGGTCTCGGGAATACGGCAGCACAACACGAG
TGTGTACACGTATATGTATGTATTGTGGCATTTCTGCTCCGTCTCGATCG
AGGCGCGTGGTCAGTGGTCTCGGGACTGCGGCAAGCACAACGTGACTACA
TACTACTATAGAGCTCTATCTCTACACGAGTAAAACATTTCTGATAAACA
CGCGCATACAAAAAGCGATGCGTGAACCCTGGGGATGGACCGGACCACGG
CAGGAAGTTGAAACGTACCATCCAGGGCGGGGGCGGGAAGTGGTGAAGCT
TCTGGTATATATGTACTCGAGTAACTAACGTAGCATTTCTGATAAACACG
CGCTTACAAATATGATAAAATCGATGCGTGAAACCCTGGGGATGGACTGG
AACACGGCAGGAAGTTGAAACGTACCATCCAGGGCGTGGCCGGGAAGTGG
TGAAGCTTCTGGTGGGGCACAAGATCGACAAGGACCGGGTCGGTATATTT
ATGTATTGTAAAATTTCTGATAAACGCACGCTTACAAGTATCGATGCGTG
AAACCCTGGCGAGGCAGGAAGTTGAAACCTACCATCCAGGTCGGGGCCGG
GAAGTGGTGAAGCTCCTGGTGGGGAACAAGATCGACAAGGACCGGGTGGT
GACACGGGCGGAGGCGGAGGCGTACGCGCGGAGCAAAGGCATGCTCTTCC
TCGAGGCCAGGTGATAAATACGACCGATGCGATGCACAGTTGTGATGCGA
TGTGATTTGATGTGCACTCCAACATTCAGTAGTTTGACATGGCATCGATG
CGATGCGATGTGGTGTGATCTGTTGGTGTAATGTCATGTGAGGTGCACCC
CAACATTCAGTATTTTAAGGAACAACACGGGGCGAGGTGCGGGCCACGTC
ACTAGAGACCTCAACAATGGCCCTTCCTTAGCTCGCCAGGGGAAAGTTGT
GTGGGGAAGGGGAGGTGGGCGGGGAGGAAGAGCGGAAGGAGGAGGAGGAA
GCGGGGGAGGGGTGGGAGGAAGACGAGGGAGAGGGATGGGACAGGGTGCA
TGTGTGCACCCAGAGGGGGCGAGTTCATTAGTTGGACATGGCATCGATAT
GATGCGATGTGATGTGACGCGCTGTGATGTGATGTGCACTCCAACGTTGA
GTAGTTTGACATACATCGATACGATGCGATGTGCTGTGACGCGCTGTGAT
GTGATGTGATGTGCACTCCAACATTCAGCAGTTTGACGTGACATCGATAC
GATGCGATGTGATGTGACGCGCTGTGATGTATGTGATGTGGTGTGCACTC
CAGCATTCAGTAGTTTGACATGGCATCGATACGATGCGATGTGATGTGAT
GTGGTGTACACTCCAACATGCAGTAGTTTGACATGACATGGATATGATGC
GATGTGATGTGACGCGCTGTGATGTGATGTGATGTGATGTGCACCCCAAC
ATTCAGCAGTTTGACATGACATCGATATGATGCGATGTGATGTGATGTGA
TGTCCGCACCTATGTTCCACTAGTAGCTCCCCCTCCCTTGTTGCACCGAG
CTGTCCCTTCCCCCGTTCCGCCTCTTGTATCTTGCTTCCCCCGGCCCCCT
TGGTTTGTCGGTCCGTCTATCTACTGTACCCATCTCTCACGCTCCCTCCT
CACTCTCGCCCTCCCATCCCCCTCTCCCCCCCTCTCTCCCTCTCCCTTAC
CCTGTCCCTCCCTGTCCCCACCCCCTCCTTGCTCTTGTGCCCTCTCCCAC
ATGGCACCCGCTCGCTCTGGATCTCGCCCCCCCCTCCTCATGTGCTTTCT
CTCTGACGCGCGCACACACACCCATGCATGCGCACCCACCCCCTCCCGCT
CCCCTCCCCACCGACTACAATACTCGCACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTGCCAAGACCAGGGTGGGCATCCAACAGGTGTTCGCG
GAGGTGGTGCAGAAGATCCTGGAAAACCCCGCCCTCCTGGCAAACACCGC
CCCCGGCCGGCCACGCACCACCATCAACCCCGCACATGCCGGGGCAGCGG
GCGGCGGGGGCGGGTATTGCTGCGGTTGAAACCGACAATGCGGCCTGCGG
GGCCGCTGCAGGCCCGTGCCCGACCCACACCTGACCCGACCTGCCCAATG
GTATGTTGCGTGCTGTGCATTGTACGAGTACGCTGCCGCCGCTAACTACC
TTCCCGAGCGATGACCGGGTTATGAGCCCTGGACAGCTGCGGGCTGTTGA
GTACTTGGCTAGTTAGGAGTATGCACTAGTCAGGTTGGTTATGGCCCTTT
CTACAGTAATGACAGTATTGTAGCAGACTCTCTATTGACTGCGCGGCGCT
GCTGAACTCCTGCGGTTTGCTGCGCTATGGTTTTCCTCTAGGGATGATCA
GGCGGTGCCGCCCGCCCGCCTGCCAAGGCTGCCCTTGTCGGGGAGGCTGG
GATGGGGCGGGGCGA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2052794..2060758- >mRNA_S-ischiensis_contig9.20630.1 ID=mRNA_S-ischiensis_contig9.20630.1|Name=mRNA_S-ischiensis_contig9.20630.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1266bp|location=Sequence derived from alignment at S-ischiensis_contig9:2052794..2060758- (Schizocladia ischiensis KU_0333) ATGTCGATGCAGAAGACTGAGCCGTATGACCACCTGTTCAAGATTCTCCT CGTGGGAGATGCCGCCGTGGGCAAAAGCAGATGTCGATGCAGAAGACTGA GCCGTATGACCACCTGTTCAAGATTCTCCTCGTGGGAGATGCCGCCGTGG GCAAAAGCAGCATCATGCTGCGCTTCACGGATGACACGTTTGACGAGCAC CTTCAGAGCACCATCGGGGTGGACTTCAAGGTCAAGATGATGGACGCAGC ATCATGCTGCGCTTCACGGATGACACGTTTGACGAGCACCTTCAGAGCAC CATCGGGGTGGACTTCAAGGTCAAGATGATGGACGCAGGAGGCAAGCGGA TAAAGATGACCATTTGGGACACCGCGGGACAAGAGCGCTTCCGGACACTC ACCAGCTCATACTACCGAGGGGCTCAGGGAATCATGCTTGGAGGCAAGCG GATAAAGATGACCATTTGGGACACCGCGGGACAAGAGCGCTTCCGGACAC TCACCAGCTCATACTACCGAGGGGCTCAGGGAATCATGCTTGTCTACGAC GTCACACGTCCAGATACATTTGACAACCTCAACAAATGGCTCGAGTCTAC GACGTCACACGTCCAGATACATTTGACAACCTCAACAAATGGCTCGAGGA AGTTGAAACCTACCATCCAGGTCGGGGCCGGGAAGTGGTGAAGCTCCTGG TGGGGAACAAGATCGACAAGGACCGGGTGGTGACACGGGCGGAGGCGGAG GCGTACGCGCGGAGCAAAGGCATGCTCTTCCTCGAGGCCAGGAAGTTGAA ACCTACCATCCAGGTCGGGGCCGGGAAGTGGTGAAGCTCCTGGTGGGGAA CAAGATCGACAAGGACCGGGTGGTGACACGGGCGGAGGCGGAGGCGTACG CGCGGAGCAAAGGCATGCTCTTCCTCGAGGCCAGTGCCAAGACCAGGGTG GGCATCCAACAGGTGTTCGCGGAGGTGGTGCAGAAGATCCTGGAAAACCC CGCCCTCCTGGCAAACACCGCCCCCGGCCGGCCACGCACCACCATCAACC CCGCACATGCCGGGGCAGCGGGCGGCGGGGGCGGGTATTGCTGCGGTTGA TGCCAAGACCAGGGTGGGCATCCAACAGGTGTTCGCGGAGGTGGTGCAGA AGATCCTGGAAAACCCCGCCCTCCTGGCAAACACCGCCCCCGGCCGGCCA CGCACCACCATCAACCCCGCACATGCCGGGGCAGCGGGCGGCGGGGGCGG GTATTGCTGCGGTTGA back to top
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