mRNA_S-ischiensis_contig9.20627.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20627.1
Unique NamemRNA_S-ischiensis_contig9.20627.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: D7FWF1_ECTSI (tRNA pseudouridine synthase B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.640e-17
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDICQHM 176
            E+E GGG YVRT+I DL R LGTR  MTALERTKQGPF L+H L  + W YD +C+H+
Sbjct:   57 ELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQGPFELQHALRLEEWEYDRLCKHL 114
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A6H5KMC7_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.260e-16
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDICQHM 176
            E+E GGG YVRT+I DL R LGTR  MTALERTKQGPF L H L  + W YD +C+H+
Sbjct:  135 ELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQGPFELRHALRLEEWEYDRLCKHL 192
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A7S2WB30_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB30_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.420e-15
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGC--MTALERTKQGPFLLEHTLPQDRWNYDDICQHMEETRWRVL 200
            ++E  GGTY+R++I+DLARH   + C  MT LERTKQGPF L+H LP  +W +D IC H+E     VL
Sbjct:  241 DVECSGGTYIRSLISDLARHHSVQSCAHMTLLERTKQGPFTLDHCLPLSQWTFDGICTHVEWCNTNVL 308
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.260e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:    6 MEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDICQHME 179
            ++  GGTY+RT+I D+AR LGTRG MT+L RTKQGPF LEH L Q  W+++ I  H++
Sbjct:  204 VQCSGGTYIRTLIADIARALGTRGHMTSLVRTKQGPFGLEHCLDQQHWHFEQILAHLD 261
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A8J2SXF4_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXF4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.290e-12
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRW-NYDDICQHMEETR 188
            ++E  GGTY+RT+I DLAR  G+ G M  LERT+QGPF LEH L  + W ++D +C H+E +R
Sbjct:  221 DVECSGGTYIRTLIDDLAREAGSCGHMVELERTRQGPFGLEHCLGDEAWGDFDAVCAHVEASR 283
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: F0YN11_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN11_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 4.650e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGC--MTALERTKQGPFLLEHTLPQDRWNYDDICQHM 176
            ++E  GGTY+RT+I+DLARH   +    M  LERTKQGPF L   L +  W++D ICQH+
Sbjct:   89 DVECSGGTYIRTLISDLARHEAVKSVAHMVELERTKQGPFELGDCLHEADWDFDAICQHL 148
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A7S1ZFC1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFC1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.990e-11
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:   15 GGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDICQ 170
            GGGTY+R+++ D+ R LGT   M +L RTKQGPF LEH L ++ WN D I +
Sbjct:   46 GGGTYIRSLVRDIGRDLGTYATMISLVRTKQGPFELEHCLDKEDWNADKIYE 97
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: F0YN09_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN09_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-10
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGC--MTALERTKQGPFLLEHTLPQDRWNYDDICQHM 176
            ++E  GGTY+RT+I+DLARH   +    M  LERTKQGPF L   L +  W++D ICQH+
Sbjct:  180 DVECSGGTYIRTLISDLARHEAVKSVAHMVELERTKQGPFELGDCLHEADWDFDAICQHL 239
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: L8Y768_TUPCH (tRNA pseudouridine(55) synthase n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L8Y768_TUPCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.770e-10
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDICQHME 179
            ++E GGG Y+R++++D+ + L +   +  L RTKQGPF LEH LP+DRW   DI Q ++
Sbjct:  211 DVECGGGFYIRSLVSDIGKELASCASVLELTRTKQGPFSLEHALPEDRWTIADIAQSLQ 269
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BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Match: A0A7S2XTT5_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTT5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.130e-9
Identity = 24/55 (43.64%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:    3 EMEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNYDDIC 167
            E++  GGTY+R++I D+A  +GT   MT LERT+QGPF ++  + + +W++++IC
Sbjct:  123 EVQCSGGTYIRSLIADIAEEMGTCAHMTHLERTQQGPFSIKDCIYKSKWDFENIC 177
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF1_ECTSI1.640e-1763.79tRNA pseudouridine synthase B n=1 Tax=Ectocarpus s... [more]
A0A6H5KMC7_9PHAE1.260e-1663.79tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A7S2WB30_9STRA8.420e-1552.94tRNA pseudouridine(55) synthase n=1 Tax=Rhizochrom... [more]
A0A835Z9D0_9STRA5.260e-1456.90tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A8J2SXF4_9STRA4.290e-1252.38tRNA pseudouridine(55) synthase n=1 Tax=Pelagomona... [more]
F0YN11_AURAN4.650e-1151.67tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
A0A7S1ZFC1_9STRA9.990e-1153.85Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0YN09_AURAN1.720e-1051.67tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
L8Y768_TUPCH1.770e-1045.76tRNA pseudouridine(55) synthase n=2 Tax=Tupaia chi... [more]
A0A7S2XTT5_9STRA2.130e-943.64tRNA pseudouridine(55) synthase n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2036066..2038256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue9.4e-14
Seed eggNOG ortholog2880.D7FWF1
Preferred nameTRUB1
KEGG koko:K03177
GOsGO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034337,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990481
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGsCOG0130@1,KOG2529@2759
EC5.4.99.25
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20627.1prot_S-ischiensis_contig9.20627.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2036071..2037969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817390.715744-UTR-S-ischiensis_contig9:2036065..20360701622817390.715744-UTR-S-ischiensis_contig9:2036065..2036070Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2036066..2036070 +
1695741078.3027973-UTR-S-ischiensis_contig9:2036065..20360701695741078.3027973-UTR-S-ischiensis_contig9:2036065..2036070Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2036066..2036070 +
1622817390.7486062-UTR-S-ischiensis_contig9:2037969..20382561622817390.7486062-UTR-S-ischiensis_contig9:2037969..2038256Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2037970..2038256 +
1695741078.3375602-UTR-S-ischiensis_contig9:2037969..20382561695741078.3375602-UTR-S-ischiensis_contig9:2037969..2038256Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2037970..2038256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817390.727523-CDS-S-ischiensis_contig9:2036070..20361521622817390.727523-CDS-S-ischiensis_contig9:2036070..2036152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2036071..2036152 +
1695741078.31671-CDS-S-ischiensis_contig9:2036070..20361521695741078.31671-CDS-S-ischiensis_contig9:2036070..2036152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2036071..2036152 +
1622817390.7377226-CDS-S-ischiensis_contig9:2037835..20379691622817390.7377226-CDS-S-ischiensis_contig9:2037835..2037969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2037836..2037969 +
1695741078.32735-CDS-S-ischiensis_contig9:2037835..20379691695741078.32735-CDS-S-ischiensis_contig9:2037835..2037969Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2037836..2037969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20627.1

>prot_S-ischiensis_contig9.20627.1 ID=prot_S-ischiensis_contig9.20627.1|Name=mRNA_S-ischiensis_contig9.20627.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
MEVGGGTYVRTIITDLARHLGTRGCMTALERTKQGPFLLEHTLPQDRWNY
DDICQHMEETRWRVLGEKAEG*
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mRNA from alignment at S-ischiensis_contig9:2036066..2038256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20627.1 ID=mRNA_S-ischiensis_contig9.20627.1|Name=mRNA_S-ischiensis_contig9.20627.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2191bp|location=Sequence derived from alignment at S-ischiensis_contig9:2036066..2038256+ (Schizocladia ischiensis KU_0333)
TGGAGATGGAGGTGGGGGGGGGCACGTACGTCCGCACCATCATCACGGAC
CTGGCCCGGCACCTCGGCACCCGCGGGTGCATGACAGGTACGCACAGCTA
TATATATACTTCGAAGTACTACATAAATATACTACGCAGTATATATATAT
ATATGTGCACTCACGTGGTGCTTGCCGTTGTCCCGAGACCATTGACCGCG
CGCCTCAGTCGAGACATATATACCAGGTACATGTGTGTGTGTGTGTTTGT
ACTCACGTTGTGCTTGCCGTAGTCCCGAAACCATTGACCACGCGCCTCGG
TCGAGACGGAGCAGACCCCTCTATAGATACAAGTGATTGTCAGAGGCATC
GTGCACGCCTGGGAGTTTGTAGTGTGAGATCGGTATACGTGGAAGTACCA
CCACCATCTGGGGGCTACAAGTAGGGTGTGCGGGACTGTATCATCCCTCG
ACACTGACTCCTATTCCGGGTCGCCGAAATGGCGGGTGACGGCCAGTGAT
GGAACGATCAGTAGACAGTTATCGGGCTCTGATTTTGTGGGTGGCGTTAC
TAACTACTTGGATTTGGTGTGGGTCAAACTATCGAATATTGACTATCGAC
AGATATTGGGTATGCGTCCTTCTGGTACCGGCCACACCATCGTGACGTTT
GCTTTGTACTATCGGGTCGGCTCTCGTGGTGTGGTCACGAGGTTCGTGCG
CGGTATATATTGCGGCACTTGCTCACGGCTTCTCTTCTCGCACTCGCCCA
GGTACGTCGCGATCTCGGTGTTCGTGTGCGGCTTCGTCCCCGGCTGCCCC
ACCCGCATGCCCCACTGTGCGCACAAGAGACTTCCGTGCGCCTCTTCCCT
TTCCTCATCACCCCGCCTTTTTCCTTCTTTATTTTTTGTTTTCTTTTTGC
CCTGCGAGGGGAAGAAGGGGTTCGTTGAGTCCCGTTTCGGGACGAGCCTT
TTGGCACGGGGCCTGGAACTCGCCGCTGATCTACCACTCAAAATAGAAAA
TAGATCAGTACTGTTGATAAATAGGTTGATTTGCTAAGATATTCCATCAC
TGGTGACGGCTCTCCTCAATAGGCCAGCAATAGGACGCGAATAGGATTGG
GGACCGGGGATCGTAAACGGCGCCATAGTGCCAGTTTAGCAGTGGCATCT
GCACACAGCGCCGTTCTGGCATAGTTGGGTCGGGGTTTCGGAAGTACACC
TTCGCATGCCTCGGGTTCGTGGGCAATAGTCCCGACTACCTACAAAGTGT
ACGGCATGAACAATGCAGGTACTTCTGGAGGACTATAGAGCAAGTAGGCA
CCTATGAGATACTTCGAGAATGGCTGTACTGTACGGTACAGCACAACAGC
ACAATCTCTCTGCATTACAGTTCTACTGTGCAGCGGCACTTAGTAGTGCC
CCTTGTTTCATTCATAATGTAGCCTCCTCCTTCTCCTCCTCCTCCTCCTC
AACCCCGACCAACCATTGTTAAGAGGAAACAGCGCTCCGTCCCATGGGGT
CACGCCTGCGGGACGTGCGTAAAAATGGCCACAACGTGTGGCTATGGCAA
GCAACTCATGAATACCCCCCTCCACTTTGTTCCCCCCGCCCCCCGCCCGC
CTTGTTCTTAGCTCCTTGATGTGACAATCACTGATATAGTAGCATTCAAC
TCTTAAATGAAACAACTACTAATACGAGAACAGTCAATCGCATGCACGTG
CGATTGTACTCGTTAAGATTTATATGAATCACCCCGCTCCCCCCCTGACC
CCCCGCGTCCTTTGCCGCAGCACTGGAGCGCACCAAGCAGGGGCCCTTTT
TGCTGGAACACACGCTGCCGCAAGACCGGTGGAATTACGACGATATCTGC
CAACACATGGAGGAGACTCGATGGCGGGTGCTGGGGGAGAAAGCGGAGGG
GTAGGAGCGCCGCCAACAGTGGAGGCTGGCGGCTGGTGGGTCGGCCCGGG
GTAAAACAGAAAAGAAACTCAAATGATGTGATGTGATGTGATGTGCACTC
TATTTCAATGTTGTTTCACATCACATCACATCACATCACAAATTGGAGCT
GGCGGCCGGCGGGTCGGCCCGGGGCGGCCGGCCAGCAATTCTTTGGCACA
CCAGGCCCGAACCCCCCCCCTGCTACTAGTACAGTAGCGGATAATAATCG
CCACTATTCTTCGGTAGAGACGAAGCGGAGGTGGCGAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2036066..2038256+

>mRNA_S-ischiensis_contig9.20627.1 ID=mRNA_S-ischiensis_contig9.20627.1|Name=mRNA_S-ischiensis_contig9.20627.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig9:2036066..2038256+ (Schizocladia ischiensis KU_0333)
ATGGAGGTGGGGGGGGGCACGTACGTCCGCACCATCATCACGGACCTGGC
CCGGCACCTCGGCACCCGCGGGTGCATGACAGATGGAGGTGGGGGGGGGC
ACGTACGTCCGCACCATCATCACGGACCTGGCCCGGCACCTCGGCACCCG
CGGGTGCATGACAGCACTGGAGCGCACCAAGCAGGGGCCCTTTTTGCTGG
AACACACGCTGCCGCAAGACCGGTGGAATTACGACGATATCTGCCAACAC
ATGGAGGAGACTCGATGGCGGGTGCTGGGGGAGAAAGCGGAGGGGTAGCA
CTGGAGCGCACCAAGCAGGGGCCCTTTTTGCTGGAACACACGCTGCCGCA
AGACCGGTGGAATTACGACGATATCTGCCAACACATGGAGGAGACTCGAT
GGCGGGTGCTGGGGGAGAAAGCGGAGGGGTAG
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