mRNA_S-ischiensis_contig9.20612.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20612.1
Unique NamemRNA_S-ischiensis_contig9.20612.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A6I6ENY1_9CLOT (GH3 auxin-responsive promoter-binding protein n=1 Tax=Clostridium bovifaecis TaxID=2184719 RepID=A0A6I6ENY1_9CLOT)

HSP 1 Score: 69.3 bits (168), Expect = 8.840e-11
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:    1 KDTEVYEDLKLPTSPTVEEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFK------LLGEMMAEQGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSPSPFEAFLIQHPRQSMY 480
            KD+E            +E+++R+VP+TDY  Y  YIE  A GEK    L SD ++   LSSGTTG+  K+IP T  + A  L G+       L+   + E          +S+ +S   ++TP G+ A +GT+ G+KA   + IL     SP E   I     + Y
Sbjct:   46 KDSEYGRKYNFKNVNGIEDYKRLVPITDYSDYEKYIERSAKGEKN--ILTSDSVEFFALSSGTTGSQ-KLIPVTSASRAN-LNGYMNFLNQGLIYNAIPEAKKGGRGLFLMSMPKS--TMITPGGIPAGAGTSEGIKA--AKRILPYMWVSPIEVLEISKQETANY 203
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: UPI0018AE1A35 (indole-3-acetic acid-amido synthetase GH3.17-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE1A35)

HSP 1 Score: 67.8 bits (164), Expect = 3.050e-10
Identity = 55/150 (36.67%), Postives = 81/150 (54.00%), Query Frame = 1 
Query:   49 VEEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDE-IQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAE--QGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGI-LAKTS--PSPFEAFLIQHPRQSMY 480
            V +F++ VPV DY+  + YI+ +A+GE  PS + S E I  LL SSGT+G  PK++P T K L +    + LL  +M +  +G D   AM +   +   E+ TPSGL+A    T   K+   R   L K +   SP +  L    +QSM+
Sbjct:   55 VHQFKKSVPVVDYEQIKPYIDRIANGE--PSNIISSEPITELLTSSGTSGGKPKIMPTTAKELDRKTFFYNLLIPVMNQYVEGLDEGKAMYLLFVKP--EISTPSGLMARPVLTSYYKSDHFRHRPLNKFNIYTSPDDTILCPDSKQSMH 200
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A314ZAU5_PRUYE (Indole-3-acetic acid-amido synthetase GH3.17 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZAU5_PRUYE)

HSP 1 Score: 65.5 bits (158), Expect = 1.140e-9
Identity = 51/146 (34.93%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   55 EFRRVVPVTDYDTYRGYIEAVASGEKEPSTLAS-DEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGI---LAKTSPSPFEAFLIQHPRQSMY 480
            +F++ VPV +Y+  + YIE +A+GE  PS + S  +I  LL SSGT+G  PKM+P TV+ L +    + LL  +M +    ++    + L     E+ TPSGL+A    T   K+   R           SP E  L    +QSMY
Sbjct:   61 DFKKKVPVVNYEDVKPYIERIANGE--PSDIISAQKITELLTSSGTSGGQPKMMPSTVEDLDRKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLVARPVLTSYYKSSNFRNRPFNRYNIYTSPDETILCSDSKQSMY 204
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A7J8MAE8_9ROSI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8MAE8_9ROSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.350e-9
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:   58 FRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQ---GCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSPSPFEAFLIQHPRQSMY 480
            F+  VP+  Y+  + YI+ +A+GE     LA   IQ  LLS+GT+G  PK+IP T ++  + +    LL +++  +   G D   ++ +   +   E+ TPSGL A+  TT   K    +  LAK   SP +  L    +QSM+
Sbjct:   60 FKTNVPIITYEDIQPYIDRIANGETSSILLAYRIIQ-FLLSTGTSGGQPKLIPMTAESFEKRMSDL-LLSDLVTRKCFSGSDEGKSLYLYFIKP--EIETPSGLKASFFTTFYFKTESFKNGLAKFCTSPIDTILCLDNKQSMF 199
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A8J5KCP9_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KCP9_ZINOF)

HSP 1 Score: 65.5 bits (158), Expect = 1.940e-9
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 1 
Query:   52 EEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDE-IQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGI---LAKTSPSPFEAFLIQHPRQSMY 480
            E+F++ VPV DYD  + YI+ +A+GE  PS + S E I  LL SSGT+G  PKM+P T + L +    + +L  +M      +     + L     E+ TPSGL A    T   K+   R           SP EA L    +QSM+
Sbjct:   57 EQFKKQVPVVDYDRVKPYIDRLANGE--PSQIISTEPILELLTSSGTSGGKPKMMPSTAEELDRKTFFYNILIPVMNRYVEGLEEGKSMYLLFVKPEISTPSGLPARPVLTSYYKSRHFRNRPFNRFNVYTSPDEAILCSDSKQSMF 201
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A5P1EDS8_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EDS8_ASPOF)

HSP 1 Score: 64.7 bits (156), Expect = 2.310e-9
Identity = 52/155 (33.55%), Postives = 79/155 (50.97%), Query Frame = 1 
Query:   40 SPTVEEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAE--QGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSP-------SPFEAFLIQHPRQSM 477
            S  V E++  VPV  Y   R YI+ +A+G ++ S ++   I+ +L+SSGT+G  PK++P   + L +    + ++  +M +  QG D   AM +   +S  E+ TPSGL A    T   K+P  R      SP       SP EA L +   QSM
Sbjct:   52 STGVSEYKARVPVVTYAAIRPYIQRIANGGEDSSIISGYPIREMLISSGTSGGKPKLMPSIEQDLDRRTYLYNMIMPIMNQYIQGLDQGKAMNLLFIKS--EMPTPSGLPARPVLTSYYKSPHFRN----RSPDRFNDHTSPDEAILCRDIHQSM 200
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A1U8I3J4_GOSHI (indole-3-acetic acid-amido synthetase GH3.17-like n=26 Tax=Gossypium TaxID=3633 RepID=A0A1U8I3J4_GOSHI)

HSP 1 Score: 65.1 bits (157), Expect = 2.620e-9
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:   58 FRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQ---GCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSPSPFEAFLIQHPRQSMY 480
            F+  VP+  Y+  + YI+ +A+GE     LA   IQ  LLS+GT+G  PK+IP T ++  + +    LL +++  +   G D   ++ +   +   E+ TPSGL A+  TT   K    +  LAK   SP +  L    +QSM+
Sbjct:   60 FKTNVPIITYEDIKPYIDRIANGETSSILLAYRIIQ-FLLSTGTSGGQPKLIPMTAESFEKRMSDL-LLSDLVTRKCFSGSDEGKSLYLYFIKP--EMETPSGLKASFFTTFYFKTESFKNGLAKFCTSPIDTILCLDNKQSMF 199
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A251R3Z3_PRUPE (Uncharacterized protein n=17 Tax=Amygdaloideae TaxID=171637 RepID=A0A251R3Z3_PRUPE)

HSP 1 Score: 65.1 bits (157), Expect = 2.650e-9
Identity = 51/146 (34.93%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   55 EFRRVVPVTDYDTYRGYIEAVASGEKEPSTLAS-DEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGI---LAKTSPSPFEAFLIQHPRQSMY 480
            +F++ VPV +Y+  + YIE +A+GE  PS + S  +I  LL SSGT+G  PKM+P TV+ L +    + LL  +M +    ++    + L     E+ TPSGL+A    T   K+   R           SP E  L    +QSMY
Sbjct:   61 DFKKKVPVVNYEDVKPYIERIANGE--PSDIISAQKITELLTSSGTSGGQPKMMPSTVEDLDRKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLVARPVLTSYYKSSNFRNRPFNRYNIYTSPDEIILCSDSKQSMY 204
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: UPI00098E1CBC (LOW QUALITY PROTEIN: probable indole-3-acetic acid-amido synthetase GH3.11 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E1CBC)

HSP 1 Score: 64.7 bits (156), Expect = 3.590e-9
Identity = 52/155 (33.55%), Postives = 79/155 (50.97%), Query Frame = 1 
Query:   40 SPTVEEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAE--QGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSP-------SPFEAFLIQHPRQSM 477
            S  V E++  VPV  Y   R YI+ +A+G ++ S ++   I+ +L+SSGT+G  PK++P   + L +    + ++  +M +  QG D   AM +   +S  E+ TPSGL A    T   K+P  R      SP       SP EA L +   QSM
Sbjct:   52 STGVSEYKARVPVVTYAAIRPYIQRIANGGEDSSIISGYPIREMLISSGTSGGKPKLMPSIEQDLDRRTYLYNMIMPIMNQYIQGLDQGKAMNLLFIKS--EMPTPSGLPARPVLTSYYKSPHFRN----RSPDRFNDHTSPDEAILCRDIHQSM 200
[Close]
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Match: A0A2C9VEZ6_MANES (Uncharacterized protein n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9VEZ6_MANES)

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-9
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 1 
Query:   52 EEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLASDE-IQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQGCDINNAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGI---LAKTSPSPFEAFLIQHPRQSMY 480
            E F++ VP+ +Y+  R +IE +A+GE  PST+ S + I  LL SSGT+G  PKM+P T + L +    + LL  +M +    ++    + L     E+ TP GL+A    T   K+   R           SP E  L    +QSMY
Sbjct:   56 ENFKKKVPIVNYEDIRPFIERIANGE--PSTVISSQPITELLTSSGTSGGLPKMMPSTAEDLDRKTLFYNLLVPIMNKYMDGLDQGKGMYLLFIKPEISTPCGLMARPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCPDSKQSMY 200
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6I6ENY1_9CLOT8.840e-1133.13GH3 auxin-responsive promoter-binding protein n=1 ... [more]
UPI0018AE1A353.050e-1036.67indole-3-acetic acid-amido synthetase GH3.17-like ... [more]
A0A314ZAU5_PRUYE1.140e-934.93Indole-3-acetic acid-amido synthetase GH3.17 n=1 T... [more]
A0A7J8MAE8_9ROSI1.350e-932.64Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A8J5KCP9_ZINOF1.940e-935.37Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A5P1EDS8_ASPOF2.310e-933.55Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A1U8I3J4_GOSHI2.620e-932.64indole-3-acetic acid-amido synthetase GH3.17-like ... [more]
A0A251R3Z3_PRUPE2.650e-934.93Uncharacterized protein n=17 Tax=Amygdaloideae Tax... [more]
UPI00098E1CBC3.590e-933.55LOW QUALITY PROTEIN: probable indole-3-acetic acid... [more]
A0A2C9VEZ6_MANES3.600e-934.01Uncharacterized protein n=4 Tax=Crotonoideae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1930272..1934988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.4
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog29730.Gorai.004G029600.1
KEGG koko:K14487
KEGG Pathwayko04075,map04075
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Indole-3-acetic acid-amido synthetase
EggNOG OGs2CM8R@1,2QPMW@2759,38A3V@33090,3GXG7@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons4
Model size481
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20612.1prot_S-ischiensis_contig9.20612.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1930273..1934988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817389.5005648-CDS-S-ischiensis_contig9:1930272..19303591622817389.5005648-CDS-S-ischiensis_contig9:1930272..1930359Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1930273..1930359 -
1695741077.3893855-CDS-S-ischiensis_contig9:1930272..19303591695741077.3893855-CDS-S-ischiensis_contig9:1930272..1930359Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1930273..1930359 -
1622817389.5134907-CDS-S-ischiensis_contig9:1931990..19321731622817389.5134907-CDS-S-ischiensis_contig9:1931990..1932173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1931991..1932173 -
1695741077.4045308-CDS-S-ischiensis_contig9:1931990..19321731695741077.4045308-CDS-S-ischiensis_contig9:1931990..1932173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1931991..1932173 -
1622817389.5245783-CDS-S-ischiensis_contig9:1933416..19335271622817389.5245783-CDS-S-ischiensis_contig9:1933416..1933527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1933417..1933527 -
1695741077.415141-CDS-S-ischiensis_contig9:1933416..19335271695741077.415141-CDS-S-ischiensis_contig9:1933416..1933527Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1933417..1933527 -
1622817389.5363028-CDS-S-ischiensis_contig9:1934889..19349881622817389.5363028-CDS-S-ischiensis_contig9:1934889..1934988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1934890..1934988 -
1695741077.4251-CDS-S-ischiensis_contig9:1934889..19349881695741077.4251-CDS-S-ischiensis_contig9:1934889..1934988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1934890..1934988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20612.1

>prot_S-ischiensis_contig9.20612.1 ID=prot_S-ischiensis_contig9.20612.1|Name=mRNA_S-ischiensis_contig9.20612.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=160bp
KDTEVYEDLKLPTSPTVEEFRRVVPVTDYDTYRGYIEAVASGEKEPSTLA
SDEIQALLLSSGTTGAAPKMIPRTVKTLAQGLEGFKLLGEMMAEQGCDIN
NAMCVSLTRSGKEVVTPSGLLAASGTTHGLKAPWVRGILAKTSPSPFEAF
LIQHPRQSMY
back to top

mRNA from alignment at S-ischiensis_contig9:1930272..1934988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20612.1 ID=mRNA_S-ischiensis_contig9.20612.1|Name=mRNA_S-ischiensis_contig9.20612.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4717bp|location=Sequence derived from alignment at S-ischiensis_contig9:1930272..1934988- (Schizocladia ischiensis KU_0333)
AAGGATACGGAGGTGTACGAAGACTTAAAATTACCTACCTCGCCCACGGT
GGAGGAGTTTCGCCGTGTGGTGCCCGTGACAGACTATGACACCTACCGGG
TGAGGGATGACTCGGCAGCTCTTCGTATGTTTACTTTCTGATACCGCAAA
GTGCATCTCGCTTCCCCGAAGCCAGTGCTAGCCGTCGGTCCATCCTGTGC
AGGGCTTGCAGCCCACACTACAACGCCGCGGTTCTCGAGCCACGGCCGTC
ACACAGGAACACATCCTCTCCAAAGGGCTCACTGCAATGGTTGATGTTCT
GGTGGATCTGCTGGGGGGCAATACCCCTGCTTGCCGGCCAGCCGGTCGAG
GCTGTGACTCATACAATTGTGACGACGTACGATCGCACGTGTGTGCGATT
GACTGTTCTCATAATAGTAGTTGTTTCATGTAGGAATTGAATCTTCTTAT
ATTAGTGATTCTCACATCAAGGAACTAAGAACAAGGCGGGGGGGGGAAAG
GAAGAGAGGGGGAGTGTCAACAACTGCGCGCACCCGACCCGGGCCGTGTG
GACAGCGGGACGCAGGCGTGTGACGGCTGGCACCGGACAGCAAATCCTTC
TTTACAGTTTTAGTCGGCCACGGTTCTGCGTTCCGTGACGGAGACAAACA
CTGCTGTAGGACAGGCGTTCGTCTGGGAATAATCTTGCGAGCGCGTTGCG
AACATGCTTTGGCGGAAGGCGGAACGCCGCGGTGTGTACTCACGTCTCTG
TGCATGCCCTGGACCCGAAGGATCCTCGGCTTTGCTCCTTCTCGTGGATC
GCTGGCCAGCTGTAGCCGAAGCCATTGGCCACGCGTCCTATTGGACGGAG
CACGCCGGCTATTTCCCCGACAGAACTGTTGGGTTGCACCATACCGGAAA
TGCCACTCCGGGGAATTTCTTCGACCCGTCACACTCCGCGGTACAACGAG
TATATAGCAGGCGTGCCTTTTCGGGTAACCTGATGAGCTCGTGGCCCGCC
AAAGTTTTCCCTGTGTAGTTGTTCGAGTCCCGCGCCCGCCTCGCTGAACG
CGCCAAAGAGGCGGCGGGCACGTACGGTTGTGTCGCGCAGTGGCTCCCTA
TGCATTTTTCTTTTGTTGCACCCTGATCCCACACCCGAGGTCCTACTTGA
GAGCAATACATTCCAGCCTGTGTCATCATCCCCTCAGGGTTAACCCCGCT
GTACATTGGTTTATGGCTCGCATGTAGCGCCTTAACCCATGGGGGCGGGG
GGGGCAACGGGGCCATCTAGTCCAACGAGCGATTGCCGCCCCGCTCTTGT
TCCTAGGTCCTTGATGTGATAATCACTAATATAAGAACACTCAATTCTTA
AATGGGACGACTACTAATACGAGAACAGTCAATCTCACACGCGTGCGGTT
GTACCTTGTTGCAATTTATATGAATCGCTGCCGCCCCACTCTTTTCCCCT
GCCATGGTCAGGGATACATCGAGGCCGTCGCTTCCGGGGAGAAGGAGCCG
TCCACCCTGGCTTCCGACGAAATACAGGCGCTGCTGCTCAGCTCGGGCAC
AACGGGGGCAGCCCCCAAGATGGTCGGTTGAACTTTTGCTTGGGAGGCGT
TAACCCTTCTACCCCTGGGGTCCGTACACTCGTAGGTTTTTAGTGTGCAA
GTCCAATTTACCAGCGGTAAAAGGGATAACCAACCCTTGGAGGATCTCTG
TTAGCCGCAGCAGGCGTGTGCAGGCTGTGCTGCAGAAGTAGAAGTTTACA
GAACAGTACAGTAGCAGTGTTGCAGTGTGGGGCAGGGAACGCTGTGGCGG
GAGGGGGGGGCGGGAGGGAGGGAGGGAGGGAGGAAGGGGGAGAGGGAGGG
GAGGGGGGGGGAAGGATGGAAGGAGAGAGGGAGAGAAGGGGGGGGAGGAG
GGAGATACCGTATGGGCGCGAGCGAGCGTATGTGTGCATGCACGCATGCG
TACATGACGTATGCGTGAGGGAACGCGTTCCTCCCTCAGCTTATGTACCA
GCGAATCCTGTGCGGAGCTTGCGGTCACCCCTTCCTTCCGGGCCTCCCGC
CCTCTCCCTCTACCTTCTCCCTCGCCTCCCCTCCCTCCCTGCCCGCCTCT
CTCACCCCCCCAACCCTCCCCCCTCCCTCCCTCCCTCCCTGCCTGCGTTC
CTCCCTCCCTCCCTCCCTCTCGCGCTTCCTGCTTCCCTCCCTCCCTCCGT
CCCTCCCTCCCTGTCTCCGTGCCTCCCCCCCTCCCGCCCTCTCCCCGGGC
CAGGGTTGGCACTTAAACCCTAAGTGGTGCCCTTTAGGCCCTTAATTAGA
GGTAATTAGGGGCTATTGGACCTAAAATGAAGACTAATTAGGCCCTAGTT
AACCTCTAAGCGCCAACCCTGTCTCCCCCTGCCTCCCTCAATACATGGAC
GGCGTAGTTAGGCCTTAAATTAACCTCTAAGTGCCAACCCTGTCTCCCCC
TGCCCCCCCTCCCTCCCTCGTACCTCGAAGCATATGGATGGCGTACAGAT
CCCCCGCACGGCAAAGACCCTCAACTAGAGGTACTTAGGTGCTATTCGAC
CTAAAACGAAGACTAAGTAGGCTGTAACTAACCTCGAAGTGCCAACCCTG
TCTCCCCCTGCCGCCCTCCCTCGATACATGGACGGCGTGCGTGCAGATCC
CCCGTACGGCAAAGACCCTGGCCCAGGCCCTGGAGGGCTTCAAGCTCCTG
GGCGAGATGATGGCGGTAATTAGGGGTTATTAGACCTAAAATGAAGATTA
ATTAGGCCCTAACTAACCTCGAGGTGCCAACCCTGTCCCTCGATACATGG
ACTGCGTGCGTGCAGATCCCCCGCACGGTAAAGACCCTGGCCCAGGGCCT
GGAGGGCTTCAAGCTCCTGGGCGAAATGATGGCGGAGCAGGGCTGCGACA
TCAACAACGCCATGTGCGTGTCGCTCACGCGCTCGGGCAAGGAGGTGGTG
ACCCCCAGCGGGCTGCTCGCGGCGTCCGGGACCACACACGGCCTCAAGGT
GGGGGGGGGGGACCAGGGTTGGCACTTGGAGCTCTAGAGGTTAATTGGGG
CCTAGTTAGCCTTCATTTTAGGTCAGTGGGCTGCTCGCAGCGTCCGGGAC
CACACACGGCCTCAAGGTGGGGGGGACAGCTGCCTGCTTGCGCGACTGCC
TGCATGCGTGCGTGCGGCGCAGGCTTGTGCTTCTTGCAGAGAGTGTGGAC
GTGCGTGCGTGTGTGCGTGTGCGGTCGGGCAAATAGGTGGTCACCCCCAG
TGGGCTGCTCGCGGCGTCCGGGACCACACACGGCCTCAAGGTGGGGGGGA
CCAGGGTTGGCACTTGGAGGTTAGTTAGGGCCTAGTTACCCTTCATAAGG
AAGGGCCGCTGCTGAGGTCTAGGGAAGTGGCCTGCACCTCGCCCCATGTT
GCTCCTGCGAATACCCTTCATTGTAGGTCTAACTACCCCTAACTACCTCT
ACTCGAGTACCACTTAGGGGTTAAGTGCCAACCCTGGGGGCGACTGCCTG
CGTGCGTGTGTGCGGCGCAGGCTTGTGCTTCTTGCAGAGAGTGTGTGGAC
GTGCGTGCATGCATGCGTGTGTGTGTGCGTATGTGTGCGCATGCCTGCGT
GTGTGGCTGTCGGCGTTTGCGCGATTGGTAGTGTTGTGAACTGGTGCCAG
TTCTTACCGGTCGGTGCCAGTTGACTGGTATAGCCGGTTACCCGACCGGT
GGCCCATCGTGTAGCCGGAATGGGTGACATGACCGTTATTCGTTGATTTT
GGCAATACGTTAGCCGTTACCGTCAACCTGTTAAAACCGACCGGTCACAA
ACCAGTTAACAGTTAAACTGGTAGGCCTTGCCAGTTCACAACTCTAGTGC
TTGGTCGTGGCTGTATTTTTTGCGGCGTACGTGGGCTTGGGGTTGTGGGT
GGGTGGGGGGATGCGTGGCTCGATTGCTTCGGGGGTTTGTTGTCTCGTTT
GCCGTCTCGTTTGCCGTTTCTTTTTGTGTGGGGGCCTGGGGACGTTCTCA
GTACCTGCCACAAACACACATGTACTGTATTGGTCTATGTTGTACCGTAC
TGTACTGTACCGTACTTGTACCATACTGTACTGTACTGTACTGTAATGTA
ATGTACTGTACTGTACTGTACTGTATTGTACTGGTACTGTACTGTACCGT
GCTGTACTGTACCGCACCGTATTGTACTGTACTGTACTGTACTGTACTGT
TTTGTATGAAGTACTTCGTAGCACTGTACTGTACTGTACTGTACTGTACT
GTACTGTACTGTACTATACTGTAGTGTACTGTACTGAGCTGTACACCTGC
GTGCAGATGACTTTCGGCATGTATCATACCCGTCGCAGAGATTGCACGCC
AAGCCCGTGTCTGGCCGGCACAGCCATCTCCTGACTCCCTTGCCCCTACC
CTGCCCCCATTCCTTCCCCCTTCCCTCCCTCCCTTGCCTCCTCCCTCCTC
CCCCCCTCTCCACCTCCCTCCCTTCCCCCCTCCCTTCCCCCCTCCTGCCC
CCCCTGCACTACCCCCTCCCTCCCTCCCCCCTCCGCCACCCCACTGCCCC
CCCCTTCCCCCCTGTACGTTCCCCCCTCTCCCCTCCCTTTCCCCCTCCCT
CCCTCCCTCCCTCCCCTCCCTCCCTGCAGGCGCCGTGGGTCCGAGGGATC
CTGGCCAAGACCTCCCCCAGCCCGTTCGAGGCCTTCCTCATTCAGCACCC
CCGCCAGTCCATGTACG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1930272..1934988-

>mRNA_S-ischiensis_contig9.20612.1 ID=mRNA_S-ischiensis_contig9.20612.1|Name=mRNA_S-ischiensis_contig9.20612.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=960bp|location=Sequence derived from alignment at S-ischiensis_contig9:1930272..1934988- (Schizocladia ischiensis KU_0333)
AAGGATACGGAGGTGTACGAAGACTTAAAATTACCTACCTCGCCCACGGT
GGAGGAGTTTCGCCGTGTGGTGCCCGTGACAGACTATGACACCTACCGGA
AGGATACGGAGGTGTACGAAGACTTAAAATTACCTACCTCGCCCACGGTG
GAGGAGTTTCGCCGTGTGGTGCCCGTGACAGACTATGACACCTACCGGGG
ATACATCGAGGCCGTCGCTTCCGGGGAGAAGGAGCCGTCCACCCTGGCTT
CCGACGAAATACAGGCGCTGCTGCTCAGCTCGGGCACAACGGGGGCAGCC
CCCAAGATGGGATACATCGAGGCCGTCGCTTCCGGGGAGAAGGAGCCGTC
CACCCTGGCTTCCGACGAAATACAGGCGCTGCTGCTCAGCTCGGGCACAA
CGGGGGCAGCCCCCAAGATGATCCCCCGCACGGTAAAGACCCTGGCCCAG
GGCCTGGAGGGCTTCAAGCTCCTGGGCGAAATGATGGCGGAGCAGGGCTG
CGACATCAACAACGCCATGTGCGTGTCGCTCACGCGCTCGGGCAAGGAGG
TGGTGACCCCCAGCGGGCTGCTCGCGGCGTCCGGGACCACACACGGCCTC
AAGATCCCCCGCACGGTAAAGACCCTGGCCCAGGGCCTGGAGGGCTTCAA
GCTCCTGGGCGAAATGATGGCGGAGCAGGGCTGCGACATCAACAACGCCA
TGTGCGTGTCGCTCACGCGCTCGGGCAAGGAGGTGGTGACCCCCAGCGGG
CTGCTCGCGGCGTCCGGGACCACACACGGCCTCAAGGCGCCGTGGGTCCG
AGGGATCCTGGCCAAGACCTCCCCCAGCCCGTTCGAGGCCTTCCTCATTC
AGCACCCCCGCCAGTCCATGTACGCGCCGTGGGTCCGAGGGATCCTGGCC
AAGACCTCCCCCAGCCCGTTCGAGGCCTTCCTCATTCAGCACCCCCGCCA
GTCCATGTAC
back to top