mRNA_S-ischiensis_contig9.20611.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20611.1
Unique NamemRNA_S-ischiensis_contig9.20611.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1928430..1929588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.0946896-CDS-S-ischiensis_contig9:1928430..19285381622817367.0946896-CDS-S-ischiensis_contig9:1928430..1928538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1928431..1928538 -
1695741060.69871-CDS-S-ischiensis_contig9:1928430..19285381695741060.69871-CDS-S-ischiensis_contig9:1928430..1928538Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1928431..1928538 -
1622817367.1056085-CDS-S-ischiensis_contig9:1929495..19295881622817367.1056085-CDS-S-ischiensis_contig9:1929495..1929588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1929496..1929588 -
1695741060.7102485-CDS-S-ischiensis_contig9:1929495..19295881695741060.7102485-CDS-S-ischiensis_contig9:1929495..1929588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1929496..1929588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20611.1prot_S-ischiensis_contig9.20611.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1928431..1929588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20611.1

>prot_S-ischiensis_contig9.20611.1 ID=prot_S-ischiensis_contig9.20611.1|Name=mRNA_S-ischiensis_contig9.20611.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=67bp
RCSAPTSPPSCTRACSCSRRAGGTLSLTSEPDTPRRTNPLAGAASRTSAW
PPASPPAGTPPWPTNSS
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mRNA from alignment at S-ischiensis_contig9:1928430..1929588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20611.1 ID=mRNA_S-ischiensis_contig9.20611.1|Name=mRNA_S-ischiensis_contig9.20611.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1159bp|location=Sequence derived from alignment at S-ischiensis_contig9:1928430..1929588- (Schizocladia ischiensis KU_0333)
AGGTGCTCCGCGCCAACTTCGCCTCCATCCTGTACGAGGGCCTGCTCATG
CTCGAGACGCGCTGGAGGGACTTTGTCGCTCACATCCGAACCGGTGAGTC
TACCCTCGAAACAACTGTACTCGAGTTGCGAGTGCAATACTTGAGTACTT
CGAAGTACATGTTGCTGCTGTAGCAAGTGCGGTACACGAGTGCATGTTGT
TGCCGTAACAAGTGCAGCACTCGAGTGCATGTTGTTGCCCCCCTTCTCTA
CGTTTTTGGTTTTTTACCCTCCGCCCCCCACCTGCCTGGTTCTTAGTTCC
CTGTTGTGATAATCACTAATATAGTAACATTCAATTCTTGAATGAATCAA
CTACTAATACGAGAACAGTCTATGACACACACGTGCGATTGTACATCGTT
ACAATTTGTATGGATCCCCCCTTCTCTACAAGCAGGAGCTTGCCAGACGC
GGCTGAGAGATTCATGGGCTCAAAGCAACTGTACTCGAGTAGCAAGTGCC
GTACATCCGGAAGTGCTCGAGTACTTTGAAGTACTTCGAAGTACACGTTG
TTGCCCCCTTTCTCTCCAAGCAGGAGCTTGCCAGACGCGGCGGAGAGATT
CATGGCGGCCGGCATAACCGTGATTCTATCTGTCTCTCCCCTCCCTCCCT
CCCTCTCCCTCCCCTCCTCCCCCCTCCCCCCCCGCTCCCCGTCCCTGCCT
CCCTGCCTCCCTGCCTTCCTGCCTCGCCCTTTCTCTCTCTCTCTTGCTTC
CCCGCTGCACCCCTCCCTCTCCCTCCCGCTTCTCCCTTCACCTCTCTCCC
TCACCCCCCCTCTCTCTCTCTCTCTCTCTTCCTCGCCGCACCCCTCCCTA
TCCCCCTCCCTCCCGCTTCTCTCTTCCCCTCTCTCCCTCACCCCTTCCCT
CCCCGCTCCCTTCCCCCCACGCCCGCCCCCTGGTCTCTCGATTCTTAAAT
GGGACAACTACTACTACGAGAACACTCATCTCACACGTGCGATTGTACCT
CGTTTCAATTTCTATTAATCACCGCTGCTCTCTCCTTCTCTGTGTGGCAG
GACACCCCCCGGCGGACGAATCCCTTGGCGGGGGCCGCGTCGCGGACATC
TGCCTGGCCGCCGGCCTCCCCGCCGGCGGGGACCCCGCCCTGGCCGACCA
ACTCGAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1928430..1929588-

>mRNA_S-ischiensis_contig9.20611.1 ID=mRNA_S-ischiensis_contig9.20611.1|Name=mRNA_S-ischiensis_contig9.20611.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=402bp|location=Sequence derived from alignment at S-ischiensis_contig9:1928430..1929588- (Schizocladia ischiensis KU_0333)
AGGTGCTCCGCGCCAACTTCGCCTCCATCCTGTACGAGGGCCTGCTCATG
CTCGAGACGCGCTGGAGGGACTTTGTCGCTCACATCCGAACCGAGGTGCT
CCGCGCCAACTTCGCCTCCATCCTGTACGAGGGCCTGCTCATGCTCGAGA
CGCGCTGGAGGGACTTTGTCGCTCACATCCGAACCGGACACCCCCCGGCG
GACGAATCCCTTGGCGGGGGCCGCGTCGCGGACATCTGCCTGGCCGCCGG
CCTCCCCGCCGGCGGGGACCCCGCCCTGGCCGACCAACTCGAGCGACACC
CCCCGGCGGACGAATCCCTTGGCGGGGGCCGCGTCGCGGACATCTGCCTG
GCCGCCGGCCTCCCCGCCGGCGGGGACCCCGCCCTGGCCGACCAACTCGA
GC
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