mRNA_S-ischiensis_contig9.20601.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20601.1
Unique NamemRNA_S-ischiensis_contig9.20601.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1814326..1815384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20601.1prot_S-ischiensis_contig9.20601.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1814572..1815384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.0379956-UTR-S-ischiensis_contig9:1814325..18145711622817367.0379956-UTR-S-ischiensis_contig9:1814325..1814571Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1814326..1814571 -
1695741060.668277-UTR-S-ischiensis_contig9:1814325..18145711695741060.668277-UTR-S-ischiensis_contig9:1814325..1814571Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1814326..1814571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.050064-CDS-S-ischiensis_contig9:1814571..18147981622817367.050064-CDS-S-ischiensis_contig9:1814571..1814798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1814572..1814798 -
1695741060.6799555-CDS-S-ischiensis_contig9:1814571..18147981695741060.6799555-CDS-S-ischiensis_contig9:1814571..1814798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1814572..1814798 -
1622817367.063126-CDS-S-ischiensis_contig9:1815254..18153841622817367.063126-CDS-S-ischiensis_contig9:1815254..1815384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1815255..1815384 -
1695741060.689574-CDS-S-ischiensis_contig9:1815254..18153841695741060.689574-CDS-S-ischiensis_contig9:1815254..1815384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1815255..1815384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20601.1

>prot_S-ischiensis_contig9.20601.1 ID=prot_S-ischiensis_contig9.20601.1|Name=mRNA_S-ischiensis_contig9.20601.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
AFAPSGSPPASLRTSSPPCRAGGRHPDGLPRSVGGLSTGGAPAGGLLSAD
PSTKPQTCTRGWTNPPLDPPGDEGPAYTHDARALLPVDVAPQPALDSCGL
PGPRGALRGPVGEELVGC*
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mRNA from alignment at S-ischiensis_contig9:1814326..1815384-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20601.1 ID=mRNA_S-ischiensis_contig9.20601.1|Name=mRNA_S-ischiensis_contig9.20601.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1059bp|location=Sequence derived from alignment at S-ischiensis_contig9:1814326..1815384- (Schizocladia ischiensis KU_0333)
GCGTTCGCGCCAAGTGGATCGCCGCCTGCTAGTCTGCGCACCAGCTCCCC
GCCTTGCCGCGCCGGGGGCCGTCATCCTGACGGTTTGCCCAGGTCTGTGG
GTGGGCTTTCCACCGGTGGAGCTCCCGCGGGTGAGTTTGGTGAGCTTCTC
TTGCACACAAAAGTGCGTACTTGGTCTGGGGGATACACGTTCGATGTGTC
AAGGCATGCTATGGCGTGCAAGGAGACATTGTCGCCCCGGCTCACCTCGG
CCTTGCCTCGGCACGTTTCTTCATGGTTGTTGCCGCTAGTCGTCGGACGA
GCTCAGCTGTGTATGCAGTCTCCGGAGAGGCTTTGTGACACGCGGCACCC
CATTGCGGCAGCACTTGCGCACGCGGCCGCCAACCCGTATGGCGATCCTG
TCGGCGCGCCGCGGGGGGTCGTACACTGTGTTATGTGAGCTGAAGAACTC
GTGCATATGGTTTGCAGGGTGCCCTTCGCAGCTGGTGAGGAGCATTCCCC
GTCCAAAGCCACACCTCCGCGTACCCCCCTCGCGCCGAATGCACCAACAC
TTTCGCCACGCGCCTTGCTGCCGACTGAACCGGCAGGTGGACTTTTATCT
GCTGATCCATCCACGAAACCACAAACCTGTACACGGGGGTGGACAAACCC
ACCACTGGATCCCCCTGGTGACGAGGGGCCTGCATATACGCATGATGCAC
GTGCGCTTTTGCCCGTGGATGTAGCGCCACAGCCCGCGCTTGATTCCTGC
GGCCTGCCCGGCCCGAGAGGCGCCCTACGGGGTCCTGTTGGCGAGGAGTT
GGTGGGGTGCTGAGGACACCACTCCGCACCGTTGGCCACGAGGGGCAGGA
CACGCGCACTTGACACACACACACAGCCTCCCCTGCCAACCCGCGCCTTG
GGCGCCACCGTGGGCAGCCAACTACCCGAGGAACTGCTCCGTAGGGGGGG
AGGATCCGATCCTGTGCAGCGGGGTGGTGATCGATCACGCGCCTGGTGCC
GGGCCGGGTGGTGGCTGGCCACACTTCAACTGCCACCCCTTGCCCAAACA
AGAATGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1814326..1815384-

>mRNA_S-ischiensis_contig9.20601.1 ID=mRNA_S-ischiensis_contig9.20601.1|Name=mRNA_S-ischiensis_contig9.20601.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig9:1814326..1815384- (Schizocladia ischiensis KU_0333)
GCGTTCGCGCCAAGTGGATCGCCGCCTGCTAGTCTGCGCACCAGCTCCCC
GCCTTGCCGCGCCGGGGGCCGTCATCCTGACGGTTTGCCCAGGTCTGTGG
GTGGGCTTTCCACCGGTGGAGCTCCCGCGGGCGTTCGCGCCAAGTGGATC
GCCGCCTGCTAGTCTGCGCACCAGCTCCCCGCCTTGCCGCGCCGGGGGCC
GTCATCCTGACGGTTTGCCCAGGTCTGTGGGTGGGCTTTCCACCGGTGGA
GCTCCCGCGGGTGGACTTTTATCTGCTGATCCATCCACGAAACCACAAAC
CTGTACACGGGGGTGGACAAACCCACCACTGGATCCCCCTGGTGACGAGG
GGCCTGCATATACGCATGATGCACGTGCGCTTTTGCCCGTGGATGTAGCG
CCACAGCCCGCGCTTGATTCCTGCGGCCTGCCCGGCCCGAGAGGCGCCCT
ACGGGGTCCTGTTGGCGAGGAGTTGGTGGGGTGCTGAGTGGACTTTTATC
TGCTGATCCATCCACGAAACCACAAACCTGTACACGGGGGTGGACAAACC
CACCACTGGATCCCCCTGGTGACGAGGGGCCTGCATATACGCATGATGCA
CGTGCGCTTTTGCCCGTGGATGTAGCGCCACAGCCCGCGCTTGATTCCTG
CGGCCTGCCCGGCCCGAGAGGCGCCCTACGGGGTCCTGTTGGCGAGGAGT
TGGTGGGGTGCTGA
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