mRNA_S-ischiensis_contig9.20588.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20588.1
Unique NamemRNA_S-ischiensis_contig9.20588.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1657352..1657842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.0168314-CDS-S-ischiensis_contig9:1657351..16578401622817372.0168314-CDS-S-ischiensis_contig9:1657351..1657840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1657352..1657840 +
1695741063.619864-CDS-S-ischiensis_contig9:1657351..16578401695741063.619864-CDS-S-ischiensis_contig9:1657351..1657840Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1657352..1657840 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.036469-UTR-S-ischiensis_contig9:1657840..16578421622817372.036469-UTR-S-ischiensis_contig9:1657840..1657842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1657841..1657842 +
1695741063.6291459-UTR-S-ischiensis_contig9:1657840..16578421695741063.6291459-UTR-S-ischiensis_contig9:1657840..1657842Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1657841..1657842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20588.1prot_S-ischiensis_contig9.20588.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1657352..1657840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20588.1

>prot_S-ischiensis_contig9.20588.1 ID=prot_S-ischiensis_contig9.20588.1|Name=mRNA_S-ischiensis_contig9.20588.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=163bp
RSGGGGGGDTPCPAAAATPRLLPCIRFSGGAAAAAAAAAAAGAASTAAAA
VAARPSAAEAAAVSAPPGDDAPVPAPVPAPCSAAAAPALPYPGRPGPFVG
PGRRLANAGRDADGGQPLLRPLAGKRGQEGREVGRPANACQTGRDAASGQ
PLLSPPRHGVMD*
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mRNA from alignment at S-ischiensis_contig9:1657352..1657842+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20588.1 ID=mRNA_S-ischiensis_contig9.20588.1|Name=mRNA_S-ischiensis_contig9.20588.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=491bp|location=Sequence derived from alignment at S-ischiensis_contig9:1657352..1657842+ (Schizocladia ischiensis KU_0333)
CGCAGCGGTGGCGGCGGCGGCGGCGATACGCCGTGCCCCGCTGCCGCCGC
CACCCCCCGCCTCCTACCCTGTATACGCTTCAGCGGCGGCGCCGCTGCCG
CCGCCGCCGCCGCCGCCGCCGCTGGGGCAGCAAGCACAGCGGCTGCAGCC
GTCGCCGCACGACCTTCTGCAGCAGAGGCAGCAGCAGTTTCAGCACCACC
CGGGGATGATGCACCCGTACCAGCACCAGTACCCGCACCCTGCAGCGCGG
CAGCCGCACCCGCTCTCCCCTATCCCGGGCGGCCCGGGCCATTCGTGGGC
CCTGGGCGGCGGCTTGCCAACGCAGGCCGCGACGCTGACGGTGGACAGCC
GCTCCTGAGGCCGCTGGCTGGTAAAAGGGGGCAGGAGGGGAGGGAGGTCG
GGCGACCGGCAAACGCCTGCCAAACAGGCCGCGATGCTGCCAGTGGACAG
CCGCTCCTGAGCCCGCCGCGGCACGGTGTCATGGATTAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1657352..1657842+

>mRNA_S-ischiensis_contig9.20588.1 ID=mRNA_S-ischiensis_contig9.20588.1|Name=mRNA_S-ischiensis_contig9.20588.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=978bp|location=Sequence derived from alignment at S-ischiensis_contig9:1657352..1657842+ (Schizocladia ischiensis KU_0333)
CGCAGCGGTGGCGGCGGCGGCGGCGATACGCCGTGCCCCGCTGCCGCCGC
CACCCCCCGCCTCCTACCCTGTATACGCTTCAGCGGCGGCGCCGCTGCCG
CCGCCGCCGCCGCCGCCGCCGCTGGGGCAGCAAGCACAGCGGCTGCAGCC
GTCGCCGCACGACCTTCTGCAGCAGAGGCAGCAGCAGTTTCAGCACCACC
CGGGGATGATGCACCCGTACCAGCACCAGTACCCGCACCCTGCAGCGCGG
CAGCCGCACCCGCTCTCCCCTATCCCGGGCGGCCCGGGCCATTCGTGGGC
CCTGGGCGGCGGCTTGCCAACGCAGGCCGCGACGCTGACGGTGGACAGCC
GCTCCTGAGGCCGCTGGCTGGTAAAAGGGGGCAGGAGGGGAGGGAGGTCG
GGCGACCGGCAAACGCCTGCCAAACAGGCCGCGATGCTGCCAGTGGACAG
CCGCTCCTGAGCCCGCCGCGGCACGGTGTCATGGATTAGCGCAGCGGTGG
CGGCGGCGGCGGCGATACGCCGTGCCCCGCTGCCGCCGCCACCCCCCGCC
TCCTACCCTGTATACGCTTCAGCGGCGGCGCCGCTGCCGCCGCCGCCGCC
GCCGCCGCCGCTGGGGCAGCAAGCACAGCGGCTGCAGCCGTCGCCGCACG
ACCTTCTGCAGCAGAGGCAGCAGCAGTTTCAGCACCACCCGGGGATGATG
CACCCGTACCAGCACCAGTACCCGCACCCTGCAGCGCGGCAGCCGCACCC
GCTCTCCCCTATCCCGGGCGGCCCGGGCCATTCGTGGGCCCTGGGCGGCG
GCTTGCCAACGCAGGCCGCGACGCTGACGGTGGACAGCCGCTCCTGAGGC
CGCTGGCTGGTAAAAGGGGGCAGGAGGGGAGGGAGGTCGGGCGACCGGCA
AACGCCTGCCAAACAGGCCGCGATGCTGCCAGTGGACAGCCGCTCCTGAG
CCCGCCGCGGCACGGTGTCATGGATTAG
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