mRNA_S-ischiensis_contig9.20587.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20587.1
Unique NamemRNA_S-ischiensis_contig9.20587.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20587.1 vs. uniprot
Match: A0A7S3XL59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL59_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 2.540e-6
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 PQQPPAKRT---------RRGQ-RRCEHPGCTRWPSYGWEGEKPRFCAPHRLDGMVNVVSR 165
            P QPPA+R+         +RG   +C+  GCT+W +YG++G+KP +C PH L GMV++ SR
Sbjct:  291 PPQPPAQRSGTKPAAKTFKRGPVTKCQAQGCTKWCTYGYDGQKPMYCKPHMLPGMVDMASR 351
[Close]
BLAST of mRNA_S-ischiensis_contig9.20587.1 vs. uniprot
Match: A0A835ZB16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB16_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   52 RRCEHPGCTRWPSYGWEGEKPRFCAPHRLDGMVNVVSR 165
            R C   GCTR PS+G++G+ P+FCA H++ GM NVVSR
Sbjct:  109 RHCTAEGCTRQPSFGYDGQPPQFCATHKVAGMSNVVSR 146
[Close]
BLAST of mRNA_S-ischiensis_contig9.20587.1 vs. uniprot
Match: A0A7S3Y689_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y689_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 2.140e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   52 RRCEHPGCTRWPSYGWEGEKP--RFCAPHRLDGMV 150
            +RC HPGC +WPS+ +EGE+   RFCA H+L GMV
Sbjct:    6 KRCHHPGCIKWPSFSFEGEQKGARFCALHKLPGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3XL59_HETAK2.540e-644.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZB16_9STRA1.410e-557.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y689_HETAK2.140e-560.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1652670..1657190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size623
Cds size612
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20587.1prot_S-ischiensis_contig9.20587.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1652679..1657190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.6996927-UTR-S-ischiensis_contig9:1652669..16526781622817366.6996927-UTR-S-ischiensis_contig9:1652669..1652678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1652670..1652678 +
1695741060.421231-UTR-S-ischiensis_contig9:1652669..16526781695741060.421231-UTR-S-ischiensis_contig9:1652669..1652678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1652670..1652678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.7118645-CDS-S-ischiensis_contig9:1652678..16528251622817366.7118645-CDS-S-ischiensis_contig9:1652678..1652825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1652679..1652825 +
1695741060.4354155-CDS-S-ischiensis_contig9:1652678..16528251695741060.4354155-CDS-S-ischiensis_contig9:1652678..1652825Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1652679..1652825 +
1622817366.7234666-CDS-S-ischiensis_contig9:1654861..16550081622817366.7234666-CDS-S-ischiensis_contig9:1654861..1655008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1654862..1655008 +
1695741060.4528692-CDS-S-ischiensis_contig9:1654861..16550081695741060.4528692-CDS-S-ischiensis_contig9:1654861..1655008Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1654862..1655008 +
1622817366.7349036-CDS-S-ischiensis_contig9:1655138..16552761622817366.7349036-CDS-S-ischiensis_contig9:1655138..1655276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1655139..1655276 +
1695741060.4635005-CDS-S-ischiensis_contig9:1655138..16552761695741060.4635005-CDS-S-ischiensis_contig9:1655138..1655276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1655139..1655276 +
1622817366.7468064-CDS-S-ischiensis_contig9:1657010..16571901622817366.7468064-CDS-S-ischiensis_contig9:1657010..1657190Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1657011..1657190 +
1695741060.4769511-CDS-S-ischiensis_contig9:1657010..16571901695741060.4769511-CDS-S-ischiensis_contig9:1657010..1657190Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1657011..1657190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20587.1

>prot_S-ischiensis_contig9.20587.1 ID=prot_S-ischiensis_contig9.20587.1|Name=mRNA_S-ischiensis_contig9.20587.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
MPQQPPAKRTRRGQRRCEHPGCTRWPSYGWEGEKPRFCAPHRLDGMVNVV
SRRCQMDGCSNLASYAYAGSKRPMYCGQHDLEGLVDIRNPRCQFDGCKVC
ARYAHRGERRPVFCTGHKEPGMVAVIGRRCREPSCESQPSYGYKGEITTI
YCAQHKLEGMVDVKHRGQRRKAAEKKAAAQQARQRLVETQQRERQEQRQQ
RHLH
back to top

mRNA from alignment at S-ischiensis_contig9:1652670..1657190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20587.1 ID=mRNA_S-ischiensis_contig9.20587.1|Name=mRNA_S-ischiensis_contig9.20587.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4521bp|location=Sequence derived from alignment at S-ischiensis_contig9:1652670..1657190+ (Schizocladia ischiensis KU_0333)
GCCGACGAGATGCCTCAGCAGCCGCCGGCAAAGAGGACGCGGCGGGGGCA
GCGAAGGTGTGAGCACCCCGGGTGCACGCGGTGGCCGTCGTACGGGTGGG
AGGGGGAGAAGCCGCGGTTCTGCGCACCGCATAGGCTGGATGGGATGGTG
AATGTGGTGAGCACAAGCGGCTGCGGCGGCAGTTGTACCATATCGTCAGA
GAGATTTTGCCCCCACGGGCCAATTTTCGGGGGAATATTTCTAGCCGGGA
AGGTCCTGGATTTTCCCGAAAGCCCTCGGAAAAGTTCCCCCAGGTCTTGA
GGGAGATTTTCCGTTTTTTCCCGCGTGAATCTGACCAGTATTCGGCGAGC
AAAGTTCTCTCAAAGATTGGCATGGGGGGGCAAGATCTCTCCGACGATTA
CGGTGCTCACTCACGTCACTCACGTCTCTGTGCGTTGTACTTGTTATATG
TACTTCGAAGTATATATATACCAGTATATATATATATATGCGCCGCACCG
CCTGGACGGCATGGTGAATGTGGTGACGCAAGCGGCTGCGACAGCAGTAT
ATATATGTAGGGGAATATGTGTGTACTTCGAAGTATATATATATGGAGGG
GGAGAAGCCCCGGTTCTGTGCGCCCCATAGGCTGGACGGGATGGTGAATT
TGGTGAGCGCGCAATAAGCGGCTGCGGCGGCAGTGTATATATATATATAT
ATATATATATATATATATGTACTCATTGGTTTGTCTTGCGACATAACCGT
GCGTGCAATGCCGACAGCCCTAAGTCGAAACTTCGGGTTTGCCCTCCGAC
AGGAGTAGCTATTAAGCCATGGACTCTCGCATCCCAACTAGGCCGGGACG
GAGCATGCAGGGTTTGCACCGGCCAGGCCGTGCACTGGCCAAGCCCGGAA
TGCCATGATGCCTTGGCATCGGCAAGCCGGATGAGGGGCCGCTCGCTAGG
CTACGACAAAGCGTATCCGTCGGCGAGTACTTGTGTGAGTCTGTCTTCGC
AGAGTTGCTCTTGGGCGCACCGGCACCCTAACGGTCACAGTAGGAACAAT
CAGGGTGATCGATCCCGACCGCTAGGTCGCCGACAATGCCACGATATATA
CGAAGTATATATATATGTACACGAGTAAAGAGCTATATATATGCGCCCCG
CCGCCTGGACGGGATGGTGAATGTGGTGAGCGCGCGATAAGCGGCTGCGA
TAGGCGATGTATTGCAGTGATCCGTGTAAATTGTAACGAGGTACAATCGC
ATGTGTTTGAGATTGAAGTGTTCTCGGTAGTGTATTGCTGTGTGTTTTTG
CATCGGAGAGGGAGAAGCCACGGTTCTGCGCGCCGCACCGCCTGGACAGG
ATGTCGAATGTGGTAGCGCGCAATAAGCGGCTGCGGCGGCATTGTATTAT
GCATACTACGTACGGTAGTATGCTCCGTCTCGACTGGTATGCTCCGTCTC
GACTGAGGCGTGGGTCAATGGTCTCGCGACTACGGCAAGCACAACGTGAG
TACATACGAAGTAGTTCGAAGTATATATACTGTGCGAGTATATATATATA
CTAGAGAGGTATCCAGATCTGAGATCCATCCCCGTACTTGTAGCCCATGC
TAACTCTAGTAGGCCTGCCCGCTTGACGTCACATCACATCGCATTCTGAC
TGACGTGACGTGATGTGATGTACACCATAGTGACATACAGTCCCGTGACT
CACATCACATCGCATGCTAACCGATGCTTGCCCGCTTGACGTCACATCTC
ATGTCATTCTGACTGATGCGACCTGACGTGATGTACTCGAGTACGAGTAC
ACAATAATGTAAATACAGTCGCTGTATTCGCATTCTGACTGACGTGACGT
GATGTGATGTACACCATAGTGACATACAGTCCCGTGACTCACATCACATC
GCATGCTAACCGATGCTTGCCCGCTTGACGTCACATCTCATGTCATTCTG
ACTGACGCGACGTGACGTGATGTACTCGAGTACGAGTACACAATAATGTA
AATACAGTCGCTGGACTCACATCACATCGCATTCTAACCGATGCTCCGGC
TTGACCGAGGCGCGTGGTCAATGGTCTCGGGACTAGCCTGCGGCAAGCAC
TGTTAGGTGTGAGTAGAGTACATTATACTTCGTGCTTCGAAGTATATTCT
AACCGATGCTGCACTGCAATCCGCGACGCTGCCGTACGTCAGGTGAGCCG
TCGCTGCCAGATGGACGGTTGTTCCAACCTGGCCAGCTACGCGTACGCGG
GGAGCAAGCGGCCCATGTACTGCGGACAGCACGACCTCGAGGGACTCGTG
GACATCCGGAACCCTCGGTGCCAGTTCGACGGCTGCAAGGTACATGTGTT
GATTCATCTAAATTGTAACGAGGTACAATCGCACGTGTGTGAGATTGAGT
GTTCTCGTGCTAATGGTTATCCCATTTAAGATTGGAGGGCGGTCTCGCCC
CCCCCATGACGCCTACCAGGTGTGTGCGCGCTACGCCCACAGGGGCGAGC
GGCGGCCGGTGTTCTGCACGGGGCACAAGGAGCCAGGGATGGTGGCGGTC
ATCGGCAGGCGCTGCCGGGAGCCCTCGTGCGAGAGCCAGCCCTCTTACGG
CTACAAGGTACTGTCAGTGTGATGTGACGTGTACCGTAAAGGACGGGGAA
TAACGACCCCCCGGCGATACATTATTGGGCCGCAAAAATACCGACGGGGG
GTCGGTATTCAACGTCCTTTCCTTATCCAACGTCACCCCCGCGATAACGA
CGAGCCGGACATGCCTCAAAAACGATGGGGTCGATATTGGGCGGGGGTCA
ATATTCCATGGTCACGGTCATGTCGTCGGGGGGGTTCGATAACGGGGGGC
GGGGGCCGATATGTTCCGAATATGGGGAGGTCGGGCTAGCGTCGTGGTGA
CGCAGACCTTGTGGCTCCACAGCCCCACAACGATGCGACGGCGAAGGCAG
AGGCAGGGATGACCACGCCTCCCGTTTGGAGGCGTGGTTCGTAGTAGTGA
AGTAGTGCTGTTGTTTGTTGTGAGTTTTCAAGTACTGTAAAAATGCGGCA
ACAACTTTCTCCCACTCTGAGTCCGGCTCACAATTTCACACACCGTACTA
GGTGACTCGGTACCTGCTCCTACGGTACGGTCTCTTACTTCGCACTCCCG
AACCTACCTAATCTCACACCAAGGGTGCTGGCACGGCCGCGGCCTGGTCC
AAGCTGGTGGGTCGGGGTGGCAAGGGGGGTCCTTATTCAAAGTCACCCCG
GTGATAATTTTGATGACCCCAAAAACTTATCAAGGGAGTCCTTTTCCAAG
GGGGGGTCCTTATTCCCCGTCCTTTACGGGTACTCTAGTCTACTGTAGTG
TGGCATCACATGACATCACATTGAAACTGGGACCTCACCAGAAGAGCTAA
GTTGGCCCTTCTTCCTTCCGCTCGCTAGTGTGATGTGATGTGATGTGATG
TGCACTCTAATTTACTGTGGTGTGGCGTTACATCACGCCACATCGCATCG
CATCGCGTCGGAACTGGGACCAGGTACTGTTAGTGTGATGTGATGTGATG
CGGTGTGGTGTGTACTCTAATTTACTGTTGTGTGGCATCGCATCACATTA
AATCACATCGCATGCCAGTCCTCCTACGGCTACAAGGCACTGTTAGTGCG
ATGTGATGCGATGTGGTGTGTAAGAATACTGTAATTTACTGTACGAGTAG
TGTGGCATCACATCACATCACATCACATCGAATTCAATGTGATGTGGTGT
GTACTCTAGTTTGCTGTGGTGTGGCATCACGTCACATCACATCACGTCGC
ATCGCACCGCATCGCATCGCATCCCATCGCTTCGCGTCATCGCATCGCAT
CGCTCGCATGCCTCTTCCCTGACAATTACTACTACGAGAACACTCGATCT
CACACCCGTGCGATTGTACCTGGATACAATTTATACGAATCACCGCACGC
CTCTTCCCCTCCTCCTCCTCCCAGGGGAAGATCACCACCATATACTGCGC
CCAGCACAGGCTGGAGGGGAGCATTGTTTAGATCTCAACGTTAGAGAGTG
ATGAAACAGAGTTTTGTGGGCGGAAGAGTCGTACTCGTACGGTTGTTCAC
TGAGACGCTGCCGATTTTTTTTTTCAGGGGGAGATCACCGCTATCTACTG
CGCCCAGCACAAGCTGGAGGGGATGGTGGACGGCAAGCACCGGGGGTACT
CATCTACAGTATATGTCTATCGACAATCGATATTCGATAGTTTGACCCAC
ACGAAATCCAAGTAGATAGTAACGCCACTCACACAATCAGCTGAGCCCGA
TAACTATCTACTGATCGATATTCTTCCATCACTGCCCCCAGGGGGAGATC
ACCACGATATACTGCGCCCAACACAAGCTGGAAGGGATGGTGGACGTCAA
GCACCGCGGGCAGCGCCGAAAGGCCGCCGAGAAGAAGGCCGCCGCCCAGC
AGGCCCGCCAACGCCTGGTGGAGACCCAGCAGAGGGAGCGGCAGGAGCAG
CGCCAGCAGCGCCACCTGCAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1652670..1657190+

>mRNA_S-ischiensis_contig9.20587.1 ID=mRNA_S-ischiensis_contig9.20587.1|Name=mRNA_S-ischiensis_contig9.20587.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig9:1652670..1657190+ (Schizocladia ischiensis KU_0333)
ATGCCTCAGCAGCCGCCGGCAAAGAGGACGCGGCGGGGGCAGCGAAGGTG
TGAGCACCCCGGGTGCACGCGGTGGCCGTCGTACGGGTGGGAGGGGGAGA
AGCCGCGGTTCTGCGCACCGCATAGGCTGGATGGGATGGTGAATGTGATG
CCTCAGCAGCCGCCGGCAAAGAGGACGCGGCGGGGGCAGCGAAGGTGTGA
GCACCCCGGGTGCACGCGGTGGCCGTCGTACGGGTGGGAGGGGGAGAAGC
CGCGGTTCTGCGCACCGCATAGGCTGGATGGGATGGTGAATGTGGTGAGC
CGTCGCTGCCAGATGGACGGTTGTTCCAACCTGGCCAGCTACGCGTACGC
GGGGAGCAAGCGGCCCATGTACTGCGGACAGCACGACCTCGAGGGACTCG
TGGACATCCGGAACCCTCGGTGCCAGTTCGACGGCTGCAAGGTGAGCCGT
CGCTGCCAGATGGACGGTTGTTCCAACCTGGCCAGCTACGCGTACGCGGG
GAGCAAGCGGCCCATGTACTGCGGACAGCACGACCTCGAGGGACTCGTGG
ACATCCGGAACCCTCGGTGCCAGTTCGACGGCTGCAAGGTGTGTGCGCGC
TACGCCCACAGGGGCGAGCGGCGGCCGGTGTTCTGCACGGGGCACAAGGA
GCCAGGGATGGTGGCGGTCATCGGCAGGCGCTGCCGGGAGCCCTCGTGCG
AGAGCCAGCCCTCTTACGGCTACAAGGTGTGTGCGCGCTACGCCCACAGG
GGCGAGCGGCGGCCGGTGTTCTGCACGGGGCACAAGGAGCCAGGGATGGT
GGCGGTCATCGGCAGGCGCTGCCGGGAGCCCTCGTGCGAGAGCCAGCCCT
CTTACGGCTACAAGGGGGAGATCACCACGATATACTGCGCCCAACACAAG
CTGGAAGGGATGGTGGACGTCAAGCACCGCGGGCAGCGCCGAAAGGCCGC
CGAGAAGAAGGCCGCCGCCCAGCAGGCCCGCCAACGCCTGGTGGAGACCC
AGCAGAGGGAGCGGCAGGAGCAGCGCCAGCAGCGCCACCTGCACGGGGAG
ATCACCACGATATACTGCGCCCAACACAAGCTGGAAGGGATGGTGGACGT
CAAGCACCGCGGGCAGCGCCGAAAGGCCGCCGAGAAGAAGGCCGCCGCCC
AGCAGGCCCGCCAACGCCTGGTGGAGACCCAGCAGAGGGAGCGGCAGGAG
CAGCGCCAGCAGCGCCACCTGCAC
back to top