mRNA_S-ischiensis_contig9.20582.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20582.1
Unique NamemRNA_S-ischiensis_contig9.20582.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1597434..1600035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size285
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20582.1prot_S-ischiensis_contig9.20582.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1597442..1600035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.591643-UTR-S-ischiensis_contig9:1597433..15974411622817366.591643-UTR-S-ischiensis_contig9:1597433..1597441Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1597434..1597441 -
1695741060.3579655-UTR-S-ischiensis_contig9:1597433..15974411695741060.3579655-UTR-S-ischiensis_contig9:1597433..1597441Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1597434..1597441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.602533-CDS-S-ischiensis_contig9:1597441..15975221622817366.602533-CDS-S-ischiensis_contig9:1597441..1597522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1597442..1597522 -
1695741060.3685005-CDS-S-ischiensis_contig9:1597441..15975221695741060.3685005-CDS-S-ischiensis_contig9:1597441..1597522Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1597442..1597522 -
1622817366.6136065-CDS-S-ischiensis_contig9:1599831..16000351622817366.6136065-CDS-S-ischiensis_contig9:1599831..1600035Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1599832..1600035 -
1695741060.377872-CDS-S-ischiensis_contig9:1599831..16000351695741060.377872-CDS-S-ischiensis_contig9:1599831..1600035Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1599832..1600035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20582.1

>prot_S-ischiensis_contig9.20582.1 ID=prot_S-ischiensis_contig9.20582.1|Name=mRNA_S-ischiensis_contig9.20582.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
REPERALQNPRARHAKPNLQRVPRADGRAGPWKVPFNTAPFRGGWGAPGT
SDIMDCATSSGPGITSRTWRCGRPWRTWASPSWAGGACGGPMSV*
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mRNA from alignment at S-ischiensis_contig9:1597434..1600035-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20582.1 ID=mRNA_S-ischiensis_contig9.20582.1|Name=mRNA_S-ischiensis_contig9.20582.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2602bp|location=Sequence derived from alignment at S-ischiensis_contig9:1597434..1600035- (Schizocladia ischiensis KU_0333)
AGGGAGCCAGAGAGAGCTTTACAAAACCCTCGGGCGCGGCACGCCAAGCC
GAACCTGCAGCGCGTCCCGCGCGCTGATGGTCGTGCGGGGCCATGGAAGG
TTCCCTTCAACACAGCTCCCTTTCGAGGGGGCTGGGGAGCACCGGGTACG
TCAGATATCATGGACTGTGCGACAAGCTCGGGGCCGGGGATTACTTCACG
GACGGTGGGTTGGCGAACAGGAAACGTCTCGCATCCTTTTGGGCGGGGGG
ATATTGGTTGAAGTTCCGGCTGTATCGAAGGAAGATGGAGGGCGGGGTGT
ACTATGGCCTGCTGACGCGTCTCAATCCTTTGGTTCCACAGGCGCAAGGT
CGCGCCCGGCGGCTGCCTGTGCGTCACACGAAGTGCGCCTGACCTTTTTG
TAGTGCTTACTACGGACAAGGCCGCCAATCTTTGAACAGTCTAATGCGGC
TGCTGCTGCGCAGTCTGCTGCCGTGTAAGCTCTTCGCAACTTGACATGAT
GGCGCTGAGCTGCACACATGTTCAGCCGAATCCATCGACACGCGAACCGA
AAGCCGCCTTCATGATTACGGTATAGTTTCCGCGTAGCTGTTGAGCGGAA
AGTGTGATTGCCATAACATTGAAAGCTGTTGTTTTTTGTTCATTCTGGCC
TCAGATCTGCCAACATTCGAGCTGCTGTTGTGCCTCTGCTTCTCACCGGT
GCCGAGACCCTCATGGGGTTGGCGGCACACTGATATCTCAATACTCTCCA
ATATATCAATATACCGTCATCGTCGAAGGGTTAGACTTGTGGGAACCCGC
CCAAACCTGGAGAGTTGCCATTCAAACTCTCCGTAACCCTTGGAGGACTA
CTGTAGTCGGGCTTGCCTGTGCCTGCAGTGCATCCGTGTCCAAACCTCAC
TTGATTTGCCAGACCGGTGCTGCAATACTGTACGGGACCGGGGCTTACCA
GAGGGGCATTGCTGGAGTGTACTGAGCTACACTGTGCAGGAGATCCCGTT
CGCTGTACTAGTACACATTCATCTCGTGCAGTTGAGGCGCGGCCAGCCCT
GTGTAGAGGGGGGCAAGCCGGAGCCGGGCCATCGTTGCCGGCCACACAAC
TGTGAGGTACTTCTACTCTACAAGCTTAGCAAAAACCTCTCCCAAACCCT
GACCGTAGCCCCAACCCTAACTGTCTCATCACCCTACGATCGTTGCCGGC
AAAACAACTGTGAGGTACTCTACAAGCTTAGCAAAAACCTCTCCCAAACC
CTGACCGCACCCCCAACCCTGACTGTCTCATTACCCTATGATCGTTGCCG
GCACGAGAACTTCGAGCTGCTAGCTTGGCAAAAACCTCTCCCAAACCCTG
ACCGTAACCCCAGCCCTATGATCTACTTGCGCCCTCACCTCAGCGAAGCA
GTGGGGGGGGTGCGGCGGCAGGCCCGCCGGGGGGGCGCTGAACAACGAAC
GACCCCCGAGCCGCCGGGCCAGCGCTTTCGGTGAAACACAAAAAACCGCG
ACGCCAACCCGCAAACCTCTCCCTGAGGTAGCAACCCTGAACCTACCGCC
CCCGCCCGAAAAGCCCCAACCCGAACCCTCATAACTCTCTCGCCCCCATG
CCCTCGTCTCGGAAAAGCAATAAACCAGCGGTGACGGAATATCTAAGCAA
ATCAACCTATTTATCGACATACCGATCTACGAGTACATATCCATCGATAG
TCGATATTCGATAGTTTGACCTACACTAAATCCAAGTACGACTTGTAGTT
ACTAGTAGTAGCGCCACCCACAAAATCATTCGAGCCCGATAGCCATCTAC
TGATCGATATTCCATCAGGGTCACCCCGTGTGATGTTGGTGTTTGTGTGA
TGTGATGTGATGTCAAACTACAGTAAATTAGAGTGCACATCACATCACAT
CACATCATTGCTGATCGATATTCCATCACTGCATAACCAGTGTAGGTGCG
GCAGGCCCTGGAGGACCTGGGCAACCCCGACCTCGGCTTGCAACCCTTTT
GCCCCTGCTAAATTGGACTTGCACAGTAAAACCCTATGATTATACGGACC
CCGGGGGTACAAGGACGTAGCCCTAACCCGAAACCTAACTCTCTCGCCCT
CATGCCCTCGTCTCGGAAAAATAACAAACCAGTGAAGGTGCGGCAGGCCC
TGGAAGACCTGGGCAACCCCGAGCTGGGCATAGTCGATATGCGATAGTTT
GACCCACACTACATCCAAGTAGCTACTAGTAGTAGCGCCACCCACAAAAT
CAGTACCTAGAGCCCGATAGCTATCTGCCGACCGATATTCCATCGGAAAA
ATAAAAAACAAACCAGTGGAGGTGCGGCAGGCCCTGGAGGAGATGGGCAA
CCCCGAGCTGGGCGATAGTCGGTATTCGATGGTTTGACCCACACTAAATC
CAAGTAGCTACTAGTAGTAGCGCCACCCACAAAATCAGTACTTAGAGCCC
GATAACTAGTATCTGCTGATCGATATTTTTCTCGAAAAAAAACGAACAAA
AACAAAAAAACAGTGGAGGTGCGGCAGGCCCTGGAGGACCTGGGCAAGCC
CGAGCTGGGCGGGCGGCGCCTGCGGGGGGCCTATGAGCGTGTGACGCTGC
TG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1597434..1600035-

>mRNA_S-ischiensis_contig9.20582.1 ID=mRNA_S-ischiensis_contig9.20582.1|Name=mRNA_S-ischiensis_contig9.20582.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig9:1597434..1600035- (Schizocladia ischiensis KU_0333)
AGGGAGCCAGAGAGAGCTTTACAAAACCCTCGGGCGCGGCACGCCAAGCC
GAACCTGCAGCGCGTCCCGCGCGCTGATGGTCGTGCGGGGCCATGGAAGG
TTCCCTTCAACACAGCTCCCTTTCGAGGGGGCTGGGGAGCACCGGGTACG
TCAGATATCATGGACTGTGCGACAAGCTCGGGGCCGGGGATTACTTCACG
GACGAGGGAGCCAGAGAGAGCTTTACAAAACCCTCGGGCGCGGCACGCCA
AGCCGAACCTGCAGCGCGTCCCGCGCGCTGATGGTCGTGCGGGGCCATGG
AAGGTTCCCTTCAACACAGCTCCCTTTCGAGGGGGCTGGGGAGCACCGGG
TACGTCAGATATCATGGACTGTGCGACAAGCTCGGGGCCGGGGATTACTT
CACGGACGTGGAGGTGCGGCAGGCCCTGGAGGACCTGGGCAAGCCCGAGC
TGGGCGGGCGGCGCCTGCGGGGGGCCTATGAGCGTGTGATGGAGGTGCGG
CAGGCCCTGGAGGACCTGGGCAAGCCCGAGCTGGGCGGGCGGCGCCTGCG
GGGGGCCTATGAGCGTGTGA
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