mRNA_S-ischiensis_contig9.20581.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20581.1
Unique NamemRNA_S-ischiensis_contig9.20581.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1591526..1595423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size530
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20581.1prot_S-ischiensis_contig9.20581.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1591526..1595423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.5286832-CDS-S-ischiensis_contig9:1591525..15917681622817366.5286832-CDS-S-ischiensis_contig9:1591525..1591768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1591526..1591768 -
1695741060.3121223-CDS-S-ischiensis_contig9:1591525..15917681695741060.3121223-CDS-S-ischiensis_contig9:1591525..1591768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1591526..1591768 -
1622817366.5399292-CDS-S-ischiensis_contig9:1592497..15926001622817366.5399292-CDS-S-ischiensis_contig9:1592497..1592600Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1592498..1592600 -
1695741060.3224187-CDS-S-ischiensis_contig9:1592497..15926001695741060.3224187-CDS-S-ischiensis_contig9:1592497..1592600Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1592498..1592600 -
1622817366.5507762-CDS-S-ischiensis_contig9:1593633..15937011622817366.5507762-CDS-S-ischiensis_contig9:1593633..1593701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1593634..1593701 -
1695741060.334341-CDS-S-ischiensis_contig9:1593633..15937011695741060.334341-CDS-S-ischiensis_contig9:1593633..1593701Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1593634..1593701 -
1622817366.5618544-CDS-S-ischiensis_contig9:1595309..15954231622817366.5618544-CDS-S-ischiensis_contig9:1595309..1595423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1595310..1595423 -
1695741060.3453658-CDS-S-ischiensis_contig9:1595309..15954231695741060.3453658-CDS-S-ischiensis_contig9:1595309..1595423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1595310..1595423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20581.1

>prot_S-ischiensis_contig9.20581.1 ID=prot_S-ischiensis_contig9.20581.1|Name=mRNA_S-ischiensis_contig9.20581.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
DLNPKEGVEGGVDAASAALRLVAALPDDDLCKLFAQRDITSGFHDCVRSA
PSSALRALACREVGRAAVRCWAATDARSFPNGAYDSGSEAQRVTQDAHDF
VTDFFKGLTWLCEDSSHPVAAAAFDAVHLAVRDHPLCSPGLAPELAGLWG
EDEEEEEDDNDDEEEEEDEAEEHLGA
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mRNA from alignment at S-ischiensis_contig9:1591526..1595423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20581.1 ID=mRNA_S-ischiensis_contig9.20581.1|Name=mRNA_S-ischiensis_contig9.20581.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3898bp|location=Sequence derived from alignment at S-ischiensis_contig9:1591526..1595423- (Schizocladia ischiensis KU_0333)
GACCTGAACCCCAAGGAGGGGGTGGAGGGAGGGGTGGATGCCGCCTCCGC
CGCGCTCCGCCTGGTGGCGGCCCTGCCCGACGACGACCTCTGCAAGCTGT
TTGCGCAACGGGATGTGAGTGTGGTATAAATTGTACAGTAGGTGGTACTA
CAGTAGTTAGTTCCTTTGGCCTTTAAGAGAAATATTTGAGCATGCTCTTT
CCTAACGTTTTTTTCAACTCACCGAATAATTGGCCGCTTCATCTGAAGGT
ATCACGTCAAAACCTTGTACCTCAGCCTCTACAACAAATCTCAAGTTGAA
GGTCAGCACGTTGAAGTTGAAAGTTTTTCGGAACTTGTTGGTGGCCCCGA
CTGTAGTGTGGTGATTCATGTACATTGCAACGAGGTACAATCGTACGTGG
GTGAGATTGAGTGTTCTCGAACGTAGTATACGAGTAAGTTAGTGGTTGTC
TCGGTAAGGATGGTGCCGGCCCTGTCCGACGACGACCTCCGCAAGTCGTT
TGCGCGACGGGATGTGAGTGTGGTATAAATTGTAACGAGGTACAACCGCA
CGTGTGTGAGATTGAGTGCTCTCGAAGTTGTTTGCGCGACGGGATGTGAG
TGTGGTATAAATTGTAGCGAGGTACAACCGCACGTGTGTGAGATTGAGTG
CTGTCGAAGTTGTTTGCGCGATGGGATGTGAGTGTGGTATAAATTGTAAC
GAGGTACAACCGCACGTGTGTGAGATTGAGTGCTCTCGAAGTTGTTTTCC
GCGACGGGATGTGAGTGTGGTATAAATTGTAACGAGGCACAGTCGCACGT
GTGTAAGATTGAAGTGTTCTCGTGTTACGAGCAGTGGTTGTCCCATTTCA
AATGGTGGCGGCGCTGCCCGACGACGACCTCTGCAAGCGGTTTGCGCAAC
GGGATGTAATTTTGGTGATTCCTATATATTTGTGGCTTATTCGCCTTGTT
TTCTGTGCCCTGCGGGCAAAAAGAAGGGCTTCTGGTGAGGTCCCCACCTT
AGGTTGTTGGGGCGGGGCCCGGAACTCGCATGTCCTTAGTATATATATGT
GTATATATATATATGTACTCACGTGGTGCTTGCCGTAGTCCCGAGGCCAT
TGACCCCGCGCCTCGTGCGAGACGGAGCAGATAAAACAAAATAATTGTAA
CGAGGTAGCTTACAATTGCACGCGTGTGAGATTGAGTGTTCTCGTATTAG
TGGTTGTCCCATTTAAGAATTGAGTGTTCCCGTTTTGTAGTGATTATCAC
ATCAAAGAATTAAGAACAAAGAGGGGAGTGTGGACCGACCGACTGGCCGC
GTCCGTTCTCTCTGTTTTCCCTCGCCTTGGTGGGGGCGGGATTGTTTCCT
CCTCTTCTCCTCCTCCTCCTCCTCCTCCCCCCCCCCCCTCCCCTGTTGTT
GCGCCCCGTAGGTGCTAGGTGTTGTGTTTGGCCGGCGTCTGGTGTTTTTT
GCGATGTTTCAGACCGCCAACGCCCTGTGCCCCCCTCCCCGCACACGTCC
CAGGTAGCCGGCTAATACGAGAACACTCAATCTCACGTACTCGAGTACCT
CATTACGGAAGTACTGAAGTACAATTTGAACGAATCGCTGTGAATGTGAT
TGTACCTCGTCACAATGTTTTTGGCGTGAAGATAAACAGCGAGTGGAAAA
GAGTAGGTGTTCCTACTTGCCATGTTTCAACCGCCAACACAGTGTCCCCC
CCCCTTCCTGCACATGTCCCAGATAACCAGTGGGTTCCATGACTGCGTGC
GCTCCGCCCCCAGCAGCGCCCTGCGCGCCCTTGCATGCAGGTGAGAATCA
GTGATGGAATATCTGAGCAAATCAACCTATTTGTCGACAGTACTGATCTA
TATATCTGCCGAGAGTCGATATTCGATAGATTGACCCGCACTAATTCCAA
GTACTTCGAAGTAGTTAGTAACGCCACCCACAAAAATCACTCGAGCCCGA
TAGCTATCTACTGATCGATATTCCATCACTGGTGAGAATCAATCGCATAC
GTCTCCCCCCCCCTCCCTTTTTACGGTATGCGTCGGATGCATTCACAGTG
GCGGGACATCTATTTTTGCCTTCCCGTGGTACCTGCTGTGTGTGCTACGG
TATCCGTTGGATGCATTCACAGCGACAGGGCATCTATTTTATCTCCCTTC
CCGTGGCACCTACTGTGTTTGCACGTGTACTTCTGACTACCCTGCTCCCG
TCCGTCCCTGGCTCGAGGCGCTCGAGTGTGCTGTGGTCTCGGGACCGTGG
CGAGCGCGACAGAATTCGTTGTACTCTTTGGAAGTTTGTTCAGTTCGACG
TATCGTTCAGCCCACGCCTCTTGAACTGCTTCGAAGTGCCAAGATGCCTG
GAGTGCGTGTGCCTCGAAGTATTCTACTACTGCATAGTACGACCCCAAAC
CCTTTTTGTGCCCCGCACGTCCGACTGCAATGGGAGCATTTGGTCGACGC
GCTTTGCGTGTTGTTCCAAGAATCCTTCCTTTGCCCGGGCACGCGGGGAC
CTGCGACGGACCATCTAAGCAAATCGACCTATTTATCGACAGTACTGACC
TATTTTGAGTGGTAGATAAGCGGCGAGTTGTATATTTGTCGATAGTCAAT
ATTCGATAGGTTGACCCACACTATATCCAAGTATATATATGTACTCATGT
GATGCTTGCCGTAGTCCCGAGACCATTGACCCCGCGCCTCGTGCGAGACG
GAGCATCCAAGTACTACTTCAAAGTAGTTAGTAGCGCCACCCACAAAATC
AGTTGAGCCCGATGACTATCTACGAGTACTGATCGATATTCCATCACTGG
TGGGGACCACGGCAAACCTGCAGGGAGGTTGGGCGAGCGGCCGTCCGCTG
CTGGGCCGCCACGGACGCCAGGTCCTTCCCCAACGGAGCGTATGATTCCG
GCTCGGAGGCCCAGCGGGTGACACAGGTTGGAGGAGGAGGCGATGGACGG
GTAGATGGGCTCCTAAAGAGGGGGAGGAGGAGGAGAAGGAAGAGGAGGGG
GAGGGGGTGTAGGAGGAGGGGGGGGCGGGGCGCAGCGGGTGACACAGGTT
AGAGGAGGAGGAGGCGGTGGACGGGCGGACGTGTGGACGGGTAGTTGGGC
TCATAAAGGGGGGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGGAGAGG
GGGTGCAGGAGGAGGGGGGGGGACGACTTAGCCCCCCATGTTTTCACAGG
GCATGCAACGGGGGGGTTGGAGGGGGAAACGTACAGTAGCCCCAACCCGA
ACCTTGGTTCCCATGAAGAAATGGTAAGGTGGAACCAGTCGTGATCAGGA
TGAGCACCGACCTTGCTTTCTTTCTCCGATGCGCAGCAACTATGGTCGGC
GCGGAATTTGACGTTGTCGTGTCGGTCATAGGTAAGTCTGTCCCCTCCCC
CACCCTGGAGGGGGAAACGTAGCCCCAACCCGAACCTTGGTTCCCGTGAA
GAAATAGTGCGGCGTCTGTCCCCTCCCCTCCCCGTGTGCCAGGACGCCCA
CGACTTCGTAACGTACTTTACCCATGAACAAATTTGCTTTGCTCGAGTAC
GTCTGTCCCCTCCCCTCCCCCCGTGTGCCAGGACGCCAAATGACTTGTAA
TGGACTTTCCCATGAACAAATGGTACGTCTATCCCCTCCCCTCCCCATGT
GCCAGGATGCCCACGACTTTGTAACCGACTTCTTCAAGGGCCTGACGTGG
CTGTGCGAGGACAGCAGCCACCCCGTGGCGGCGGCCGCCTTCGACGCCGT
CCACCTCGCCGTCCGGGACCACCCCCTGTGCTCCCCGGGCCTCGCCCCCG
AGCTGGCGGGGCTCTGGGGCGAGGACGAAGAGGAGGAGGAGGACGACAAT
GATGATGAGGAGGAAGAGGAGGACGAGGCTGAGGAGCACCTGGGGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1591526..1595423-

>mRNA_S-ischiensis_contig9.20581.1 ID=mRNA_S-ischiensis_contig9.20581.1|Name=mRNA_S-ischiensis_contig9.20581.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig9:1591526..1595423- (Schizocladia ischiensis KU_0333)
GACCTGAACCCCAAGGAGGGGGTGGAGGGAGGGGTGGATGCCGCCTCCGC
CGCGCTCCGCCTGGTGGCGGCCCTGCCCGACGACGACCTCTGCAAGCTGT
TTGCGCAACGGGATGACCTGAACCCCAAGGAGGGGGTGGAGGGAGGGGTG
GATGCCGCCTCCGCCGCGCTCCGCCTGGTGGCGGCCCTGCCCGACGACGA
CCTCTGCAAGCTGTTTGCGCAACGGGATATAACCAGTGGGTTCCATGACT
GCGTGCGCTCCGCCCCCAGCAGCGCCCTGCGCGCCCTTGCATGCAGATAA
CCAGTGGGTTCCATGACTGCGTGCGCTCCGCCCCCAGCAGCGCCCTGCGC
GCCCTTGCATGCAGGGAGGTTGGGCGAGCGGCCGTCCGCTGCTGGGCCGC
CACGGACGCCAGGTCCTTCCCCAACGGAGCGTATGATTCCGGCTCGGAGG
CCCAGCGGGTGACACAGGGAGGTTGGGCGAGCGGCCGTCCGCTGCTGGGC
CGCCACGGACGCCAGGTCCTTCCCCAACGGAGCGTATGATTCCGGCTCGG
AGGCCCAGCGGGTGACACAGGATGCCCACGACTTTGTAACCGACTTCTTC
AAGGGCCTGACGTGGCTGTGCGAGGACAGCAGCCACCCCGTGGCGGCGGC
CGCCTTCGACGCCGTCCACCTCGCCGTCCGGGACCACCCCCTGTGCTCCC
CGGGCCTCGCCCCCGAGCTGGCGGGGCTCTGGGGCGAGGACGAAGAGGAG
GAGGAGGACGACAATGATGATGAGGAGGAAGAGGAGGACGAGGCTGAGGA
GCACCTGGGGGCGGATGCCCACGACTTTGTAACCGACTTCTTCAAGGGCC
TGACGTGGCTGTGCGAGGACAGCAGCCACCCCGTGGCGGCGGCCGCCTTC
GACGCCGTCCACCTCGCCGTCCGGGACCACCCCCTGTGCTCCCCGGGCCT
CGCCCCCGAGCTGGCGGGGCTCTGGGGCGAGGACGAAGAGGAGGAGGAGG
ACGACAATGATGATGAGGAGGAAGAGGAGGACGAGGCTGAGGAGCACCTG
GGGGCG
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