mRNA_S-ischiensis_contig9.20569.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20569.1
Unique NamemRNA_S-ischiensis_contig9.20569.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1463036..1464142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.2930806-CDS-S-ischiensis_contig9:1463035..14631601622817366.2930806-CDS-S-ischiensis_contig9:1463035..1463160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1463036..1463160 +
1695741060.1478705-CDS-S-ischiensis_contig9:1463035..14631601695741060.1478705-CDS-S-ischiensis_contig9:1463035..1463160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1463036..1463160 +
1622817366.3082309-CDS-S-ischiensis_contig9:1463958..14641421622817366.3082309-CDS-S-ischiensis_contig9:1463958..1464142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1463959..1464142 +
1695741060.1580195-CDS-S-ischiensis_contig9:1463958..14641421695741060.1580195-CDS-S-ischiensis_contig9:1463958..1464142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1463959..1464142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20569.1prot_S-ischiensis_contig9.20569.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1463036..1464142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20569.1

>prot_S-ischiensis_contig9.20569.1 ID=prot_S-ischiensis_contig9.20569.1|Name=mRNA_S-ischiensis_contig9.20569.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
MEGWRQGQGQGEGRVPLGGRQLGQGQARGEEQGLHGHTFVMRTSGSQDGR
RASGGGGGGPGMGQCSPPAPSAPYGGSGGGGGGGSENPYSAAVSNWGSEQ
GMG
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mRNA from alignment at S-ischiensis_contig9:1463036..1464142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20569.1 ID=mRNA_S-ischiensis_contig9.20569.1|Name=mRNA_S-ischiensis_contig9.20569.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1107bp|location=Sequence derived from alignment at S-ischiensis_contig9:1463036..1464142+ (Schizocladia ischiensis KU_0333)
ATGGAGGGGTGGAGGCAGGGGCAGGGGCAGGGCGAGGGGCGTGTGCCCCT
TGGTGGGCGCCAGCTCGGGCAGGGGCAGGCACGGGGCGAGGAGCAGGGCT
TGCATGGCCACACTTTTGTCATGAGGTGAGCCGCCAGGACGTTTTGGAAA
AGAGGAGAGAAGCCAGTGGGCAAGAGATAAGGGGTGCACACGTCCCTACA
TATTGGGCCTACAGTAGATGCACCCACCTCGTGCTTGCCGCCGTCCGCGA
GCCCACTGGCCATGCGCACCTCGACCCAGACGGAACAGGCCTCCTCCCGC
CCCTGGCAGAACCGGGGTGGGAGGGACGAGGTGCCTCTCATAGTACCTAC
TTTGTACTTGTACTCACGTCCTGGTATACGCTGCGATGTACACATTTGAA
AGTACTCATGTGCACACGAGCATAGACGTAGCTGCGAGTACGTACATAGA
GTTACCGAGTACAGGCTGAAGGGCCGCAGCTCCGCCCACTGGCGTTCGGA
CTCCGGCCGCCGAATCGGCTAATGAGTCCCAGCCAAAGTTGCACTTCGAA
GTACCCAAGACACGGCCCGGGCGGCGGGAAGCGTTGCGCGCGCATGTCCC
AAAAAATCACACCCGTACACACAATAGCGCGGGGTCCTCCCCGCGCCTCC
AGGTCGGCTCGACTAGAAAAGTCGATGAAGTGCTAGTACTTCCGGAAGTA
CTACGGACCCCTCCTCCCCGTCCACCTCCCCCTCCTCCTTTTCTCCCCTT
CCCCACACAAATTTCCCCTGGCTAAGGAAGGGCCACTGCTGAGGTCTTTC
GTGACGTGGCCTGCACCTCGCCCTGTGTTGTTCCAGTTAATACTTCCAAG
CACTACGGAAGTAAGTGTATGGATAGATGCTGACCTGTCACGCCTCCGCC
GCCTCCGTCGATCCTTCACCCAGGACTTCGGGCTCTCAAGACGGGAGGCG
GGCCAGCGGCGGCGGTGGTGGCGGCCCGGGAATGGGGCAGTGCTCGCCCC
CGGCTCCTTCGGCCCCTTACGGCGGCAGCGGCGGCGGCGGCGGTGGGGGC
TCTGAGAACCCCTACTCGGCGGCTGTTTCCAACTGGGGGTCGGAGCAAGG
GATGGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1463036..1464142+

>mRNA_S-ischiensis_contig9.20569.1 ID=mRNA_S-ischiensis_contig9.20569.1|Name=mRNA_S-ischiensis_contig9.20569.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig9:1463036..1464142+ (Schizocladia ischiensis KU_0333)
ATGGAGGGGTGGAGGCAGGGGCAGGGGCAGGGCGAGGGGCGTGTGCCCCT
TGGTGGGCGCCAGCTCGGGCAGGGGCAGGCACGGGGCGAGGAGCAGGGCT
TGCATGGCCACACTTTTGTCATGAGATGGAGGGGTGGAGGCAGGGGCAGG
GGCAGGGCGAGGGGCGTGTGCCCCTTGGTGGGCGCCAGCTCGGGCAGGGG
CAGGCACGGGGCGAGGAGCAGGGCTTGCATGGCCACACTTTTGTCATGAG
GACTTCGGGCTCTCAAGACGGGAGGCGGGCCAGCGGCGGCGGTGGTGGCG
GCCCGGGAATGGGGCAGTGCTCGCCCCCGGCTCCTTCGGCCCCTTACGGC
GGCAGCGGCGGCGGCGGCGGTGGGGGCTCTGAGAACCCCTACTCGGCGGC
TGTTTCCAACTGGGGGTCGGAGCAAGGGATGGGAGACTTCGGGCTCTCAA
GACGGGAGGCGGGCCAGCGGCGGCGGTGGTGGCGGCCCGGGAATGGGGCA
GTGCTCGCCCCCGGCTCCTTCGGCCCCTTACGGCGGCAGCGGCGGCGGCG
GCGGTGGGGGCTCTGAGAACCCCTACTCGGCGGCTGTTTCCAACTGGGGG
TCGGAGCAAGGGATGGGA
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