mRNA_S-ischiensis_contig9.20562.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.240e-55 Identity = 118/203 (58.13%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGT-----AYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMA-GGRGVYFGRAE 693
+G GKTTLLDLL GRK T G +VV G R+ G V RG+ AYVMQDNVH ++LTVRQTL FAA+LRM R+ RVAA+V L L GVL++ VG+E +RG+SGGE KRLS+AVE +++P L+LLDEPTSGLD+TTALEV+ AVRGLAD GRTV+ ++HQPS EM+ L LL+A GG YFGRA
Sbjct: 1105 SGSGKTTLLDLLGGRK---TRSVGRQEGDIVVDGVFGREGGVVSRGSGVGGSAYVMQDNVHHASLTVRQTLQFAAKLRMSNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVLTAVRGLADLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRAN 1304
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI) HSP 1 Score: 200 bits (509), Expect = 2.230e-55 Identity = 118/203 (58.13%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGT-----AYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMA-GGRGVYFGRAE 693
+G GKTTLLDLL GRK T G +VV G R+ G V RG+ AYVMQDNVH ++LTVRQTL FAA+LRM R+ RVAA+V L L GVL++ VG+E +RG+SGGE KRLS+AVE +++P L+LLDEPTSGLD+TTALEV+ AVRGLAD GRTV+ ++HQPS EM+ L LL+A GG YFGRA
Sbjct: 702 SGSGKTTLLDLLGGRK---TRSVGRQEGDIVVDGVFGREGGVVSRGSGVGGSAYVMQDNVHHASLTVRQTLQFAAKLRMCNTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPGLLLLDEPTSGLDATTALEVLTAVRGLADLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRAN 901
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: A0A482SFR3_9ARCH (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFR3_9ARCH) HSP 1 Score: 175 bits (443), Expect = 1.240e-50 Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 1
Query: 118 TTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFG 684
+TLLDLLA RK G ++SGH++ G R + R R +AY++QD++H LTV++TL FAA R+P G+ + + RV+AL+ + L + DS VG RG+SGG+LKRLSIAVEI+ +P +I LDEPTSGLDS ALEVM AVR L+D+ RT V T+HQPSP+++ LF LL+A GR VYFG
Sbjct: 20 STLLDLLADRKEDG-----LWSGHILFNGGARSKWFR--RDSAYILQDDMHIPTLTVKETLQFAASTRLPEGSGREAIEERVSALLNIMGLEHIKDSMVGGSGIRGISGGQLKRLSIAVEIVALPDVIFLDEPTSGLDSLIALEVMHAVRTLSDQHRTCVSTIHQPSPQVFDLFDSVLLIAEGRMVYFG 201
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.350e-45 Identity = 98/194 (50.52%), Postives = 127/194 (65.46%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFG 684
+G GKTTLLD+LAGRK AG G VF G+ + ++ +YV QDNVH TVR+TL FAA LR+ G AQR+ V ++ L L V D VG+ +G+SGG+ +RL+I VEI+N+P +I LDEPT+GLDS + EVM AVR LA++ RTV CT+HQPS E++ LF K +LMA G VYFG
Sbjct: 697 SGAGKTTLLDVLAGRKTAGLIEGEVF-----FNGKAGMPSPKL---CSYVTQDNVHIGCFTVRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPGMIFLDEPTTGLDSNISYEVMAAVRNLANQNRTVCCTIHQPSIEVFALFDKLILMAKGEQVYFG 882
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.210e-45 Identity = 96/197 (48.73%), Postives = 127/197 (64.47%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRAE 693
+G GK+TLLDLLA RK G +G +GG+ + + + +YV QDNVH S TVR+TL FAA LR+ G P +R R ++K L L V D PVGN +G+SGG+ +RLSI VEI+++P ++ LDEPT+GLDS + EVM +VR +A+ RTVVCT+H PS +Y LF LL+A GR YFG AE
Sbjct: 684 SGAGKSTLLDLLAHRKTGG-----FITGEYYIGGQAEKPSSK---WCSYVTQDNVHISLFTVRETLEFAALLRLKEGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDVLFLDEPTTGLDSQISHEVMSSVRNIANHNRTVVCTIHSPSKAVYELFDSLLLLALGRQTYFGSAE 872
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: L8HL07_ACACA (ABC2 type transporter superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HL07_ACACA) HSP 1 Score: 169 bits (428), Expect = 6.260e-45 Identity = 91/199 (45.73%), Postives = 136/199 (68.34%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNV-FSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRG-RTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRAE 693
+G GKTTL+D+LA R G G V +G V ++ +R + YVMQDN+ LTVR+T+++AARL++P +A+++ RV ++ LRL + DS VG SR +SGGELKR++IA+E+++ P+L+ LDEPTSGLDS A ++++ ++ LA RG RTV+CT+HQPS M+ F K LL++ GR +YFG+A+
Sbjct: 159 SGAGKTTLIDVLACRGMKGRLSGEVNLNGEPVA-----KRQAFFRRVSGYVMQDNIMLETLTVRETISYAARLKLPSKMTRAEKEQRVDRVMAELRLTHIADSRVGGSSSRSISGGELKRVAIAIELVSSPSLLFLDEPTSGLDSNGATDLVQLLKSLATRGQRTVLCTIHQPSSHMFNAFDKLLLLSQGRVIYFGKAD 352
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: A0A1J3I8W5_NOCCA (ABC transporter G family member 13 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I8W5_NOCCA) HSP 1 Score: 160 bits (405), Expect = 1.200e-44 Identity = 91/197 (46.19%), Postives = 129/197 (65.48%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRAE 693
+G GK+TLLD LAGR AG V SG V+V G++RR G+AYV Q++V LTVR+++A++A LR+P + + V A + + L D +GN RG+SGGE KRLSIA+E+L P+L+ LDEPTSGLDS +A V++ +R +A G+TV+ ++HQPS E++ LF LL++GG VYFG A+
Sbjct: 9 SGSGKSTLLDALAGR----LAGNVVMSGKVLVNGKKRRLDFG---GSAYVTQEDVLLGTLTVRESIAYSAHLRLPSNLTREEISDIVEATITEMGLQECSDRTIGNWHMRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQILRNIASNGKTVISSIHQPSGEVFALFDDLLLLSGGETVYFGDAK 198
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: A0A482SQ92_9ARCH (ATP-binding cassette domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ92_9ARCH) HSP 1 Score: 166 bits (419), Expect = 2.420e-43 Identity = 92/187 (49.20%), Postives = 129/187 (68.98%), Query Frame = 1
Query: 133 LLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRAE 693
+L+ RK G GN+ GG R + +R +AY++QD++H LTVR+T+ FAA R+P GT + + R+ +L+ L L + +S VG+ DSRG+SGG+LKRLSIAVEI+++P +I LDEPTSGLDS ALEVM+AVR LA++ RTVV T+HQPSP ++ LF +L+A GR VY+G +
Sbjct: 1 MLSDRKLEGEWSGNILFN----GGPRSKW---FRRDSAYILQDDLHIPTLTVRETIQFAANTRLPEGTSKEAIEERIVSLLDILGLDHIQNSVVGDADSRGISGGQLKRLSIAVEIVSLPDVIFLDEPTSGLDSLIALEVMQAVRKLANQNRTVVSTIHQPSPLVFDLFDTVMLIAEGRMVYYGSVQ 180
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: D8SPK5_SELML (ABC transporter domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SPK5_SELML) HSP 1 Score: 164 bits (414), Expect = 4.150e-43 Identity = 93/196 (47.45%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 103 AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRA 690
+GCGK+TLLD LAGR A + +G +++ G +R+ + + AYV QD+ S LTVR+T+ + +RLR+P P +++ A V ++ + L ++PVGN RG+SGGE +RLSIAVEIL P L+ LDEPTSGLDS +A V R +R LA RTV+C+VHQPS E++ LF LL++ GR VYFG A
Sbjct: 101 SGCGKSTLLDALAGR----LAKNAIQTGDILLNGHKRKLSYGI---AAYVTQDDTLISTLTVRETIFYTSRLRLPDAMPNSEKQAIVERVIIEMGLQDCANTPVGNWHLRGLSGGEKRRLSIAVEILTRPRLLFLDEPTSGLDSASAFFVTRTLRRLARDKRTVICSVHQPSSEVFQLFDNLLLLSNGRTVYFGPA 289
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Match: A0A6N2LI41_SALVM (ABC transporter domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LI41_SALVM) HSP 1 Score: 157 bits (398), Expect = 4.720e-43 Identity = 97/222 (43.69%), Postives = 131/222 (59.01%), Query Frame = 1
Query: 58 KPARKLFNLLKQFYR----------AGCGKTTLLDLLAGRKRAGTAGGNVFSGHVVVGGRRRRQTGRVQRGTAYVMQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLDSPVGNEDSRGVSGGELKRLSIAVEILNMPALILLDEPTSGLDSTTALEVMRAVRGLADRGRTVVCTVHQPSPEMYFLFHKALLMAGGRGVYFGRAE 693
KP R+L N L + +G GK+TLLD LAGR AG + +G+V++ G++RR G AYV Q+N LTVR+TL ++A LR+P + + D V + + L D +GN RG+SGGE KRLSIA+EIL P L+ LDEPTSGLDS A V + +R +A GRTV+ +VHQPS E++ LF L++GG VYFG A+
Sbjct: 51 KPTRRLLNGLNGYAEPGKLLAIMGPSGSGKSTLLDALAGR----LAGNVLMTGNVLLNGKKRRLD---YGGVAYVTQENTLLGTLTVRETLNYSAHLRLPCSMAKEEIDDIVEGTIMEMGLQECSDRLIGNWHLRGISGGEKKRLSIALEILIRPQLLFLDEPTSGLDSAAAFFVTQTLRNIARDGRTVISSVHQPSSEVFALFDDLFLLSGGETVYFGEAK 265 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20562.1 >prot_S-ischiensis_contig9.20562.1 ID=prot_S-ischiensis_contig9.20562.1|Name=mRNA_S-ischiensis_contig9.20562.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp MQDNVHCSALTVRQTLAFAARLRMPRGTPQAQRDARVAALVKTLRLGGVLback to top mRNA from alignment at S-ischiensis_contig9:1415969..1418755- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20562.1 ID=mRNA_S-ischiensis_contig9.20562.1|Name=mRNA_S-ischiensis_contig9.20562.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2787bp|location=Sequence derived from alignment at S-ischiensis_contig9:1415969..1418755- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:1415969..1418755- >mRNA_S-ischiensis_contig9.20562.1 ID=mRNA_S-ischiensis_contig9.20562.1|Name=mRNA_S-ischiensis_contig9.20562.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig9:1415969..1418755- (Schizocladia ischiensis KU_0333)back to top |