mRNA_S-ischiensis_contig9.20549.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20549.1
Unique NamemRNA_S-ischiensis_contig9.20549.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1277597..1278208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20549.1prot_S-ischiensis_contig9.20549.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1277603..1277911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.9070897-UTR-S-ischiensis_contig9:1277596..12776021622817371.9070897-UTR-S-ischiensis_contig9:1277596..1277602Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1277597..1277602 +
1695741063.5763273-UTR-S-ischiensis_contig9:1277596..12776021695741063.5763273-UTR-S-ischiensis_contig9:1277596..1277602Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1277597..1277602 +
1622817371.9338646-UTR-S-ischiensis_contig9:1277911..12782081622817371.9338646-UTR-S-ischiensis_contig9:1277911..1278208Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1277912..1278208 +
1695741063.6001475-UTR-S-ischiensis_contig9:1277911..12782081695741063.6001475-UTR-S-ischiensis_contig9:1277911..1278208Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1277912..1278208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.9187875-CDS-S-ischiensis_contig9:1277602..12779111622817371.9187875-CDS-S-ischiensis_contig9:1277602..1277911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1277603..1277911 +
1695741063.5872703-CDS-S-ischiensis_contig9:1277602..12779111695741063.5872703-CDS-S-ischiensis_contig9:1277602..1277911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1277603..1277911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20549.1

>prot_S-ischiensis_contig9.20549.1 ID=prot_S-ischiensis_contig9.20549.1|Name=mRNA_S-ischiensis_contig9.20549.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=103bp
MGVPLESPSGIPLYFEALRATTSKYSTVVEYCRGGGPGVGCVYRVGACMG
APRLGGPGPGAAGPGCLMLASPVLYGRFAVPSCGLTGPLTRVYVYFEVPI
NP*
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mRNA from alignment at S-ischiensis_contig9:1277597..1278208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20549.1 ID=mRNA_S-ischiensis_contig9.20549.1|Name=mRNA_S-ischiensis_contig9.20549.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig9:1277597..1278208+ (Schizocladia ischiensis KU_0333)
GCATGCATGGGTGTGCCCCTGGAATCGCCATCGGGGATACCTTTGTACTT
CGAAGCACTTCGTGCTACTACTTCGAAGTACAGTACAGTAGTAGAGTACT
GCAGGGGAGGGGGGCCGGGGGTTGGGTGCGTCTACAGAGTGGGTGCGTGC
ATGGGTGCGCCCCGCCTGGGCGGGCCCGGGCCTGGGGCCGCTGGCCCAGG
CTGCCTGATGCTGGCCAGCCCTGTCCTCTATGGGCGTTTTGCTGTGCCGT
CATGTGGCCTGACCGGCCCCCTCACGAGGGTATACGTGTACTTCGAAGTA
CCTATTAACCCTTAGAGGAAGCCACGGTGGCCGGCCCCCTCATGAGGGTA
TACGAGCACCTATTAAAGTGAGCATTTTGCTGTGCCGTCATGTGGCCTGG
CCCGCCCCCTCACCAGGGTATACGAGTACCTGTTAACCCTTGGGAAAGGC
CACGGTGGTGGTGCAGCAGTACTCATGATTCCTCGTCGAACTCCATTGGG
GTGCACTGTCAGCCGCTGAGGGTTGCAGTGAGCACTCCTACCTAACGTGA
CCTGCCCGTGAGGTGGGCGGTTCTGGCCCCCAGAAGGGGTGCGGGCAGGC
GGCGTGTGTTCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1277597..1278208+

>mRNA_S-ischiensis_contig9.20549.1 ID=mRNA_S-ischiensis_contig9.20549.1|Name=mRNA_S-ischiensis_contig9.20549.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=618bp|location=Sequence derived from alignment at S-ischiensis_contig9:1277597..1278208+ (Schizocladia ischiensis KU_0333)
ATGGGTGTGCCCCTGGAATCGCCATCGGGGATACCTTTGTACTTCGAAGC
ACTTCGTGCTACTACTTCGAAGTACAGTACAGTAGTAGAGTACTGCAGGG
GAGGGGGGCCGGGGGTTGGGTGCGTCTACAGAGTGGGTGCGTGCATGGGT
GCGCCCCGCCTGGGCGGGCCCGGGCCTGGGGCCGCTGGCCCAGGCTGCCT
GATGCTGGCCAGCCCTGTCCTCTATGGGCGTTTTGCTGTGCCGTCATGTG
GCCTGACCGGCCCCCTCACGAGGGTATACGTGTACTTCGAAGTACCTATT
AACCCTTAGATGGGTGTGCCCCTGGAATCGCCATCGGGGATACCTTTGTA
CTTCGAAGCACTTCGTGCTACTACTTCGAAGTACAGTACAGTAGTAGAGT
ACTGCAGGGGAGGGGGGCCGGGGGTTGGGTGCGTCTACAGAGTGGGTGCG
TGCATGGGTGCGCCCCGCCTGGGCGGGCCCGGGCCTGGGGCCGCTGGCCC
AGGCTGCCTGATGCTGGCCAGCCCTGTCCTCTATGGGCGTTTTGCTGTGC
CGTCATGTGGCCTGACCGGCCCCCTCACGAGGGTATACGTGTACTTCGAA
GTACCTATTAACCCTTAG
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