mRNA_S-ischiensis_contig9.20543.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20543.1
Unique NamemRNA_S-ischiensis_contig9.20543.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20543.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.510e-12
Identity = 80/249 (32.13%), Postives = 110/249 (44.18%), Query Frame = -1 
Query:    7 IIKTVLDGDLRMVEIRGAS-FSALEQAVRQAYRLPSS---DLVFTYKDGDGDNVRFDTDAELALALRTCSSPLRVTV-------------------KCRGRAPTQDRAFDTFQAAQSDAMDEEEEDE-DCVIVETQVSHPAQHAVPQARGGAGAPAXXXXXXXXXXXXXXXXXXXXXPVTEAAEAEASNDPEHSALFRTAAARLRAAPHGVDISATHLARAFSLLQLRPRLLVQRGLTARRFLRPSSSA 681
            ++K  LDGDLR++EI     F  L + V  AY +P+     L FTYKD DGD VRFDT+AEL LA+RT S PLR+ V                   +    AP    +   +  A +        DE D ++V+      A  A P      G+ A                          AEA A+ DPE S L++ A+ RL A    V ++ T L R  +L Q++ R LV  GL   R L  +++A
Sbjct:    4 LVKIKLDGDLRIMEIPNPPRFDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTPNPEATSAAPPSIPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFE-----------AEAAAARDPEGSLLYQKASMRL-AKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAAA 240
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BLAST of mRNA_S-ischiensis_contig9.20543.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.070e-8
Identity = 70/226 (30.97%), Postives = 98/226 (43.36%), Query Frame = -1 
Query:    1 QAYRLPSS---DLVFTYKDGDGDNVRFDTDAELALALRTCSSPLRVTV-----------------------KCRGRAPTQDRAFDTFQAAQS-DAMDEEEEDEDCVIVETQVSHPAQHAVPQARGGAGAPAXXXXXXXXXXXXXXXXXXXXXPVTEAAEAEASNDPEHSALFRTAAARLRAAPHGVDISATHLARAFSLLQLRPRLLVQRGLTARRFLRPSSSAPA 597
            +AY LP+     L FTYKD +GD VRFDT+AEL LALRT S PLR+ V                       +    AP    +   +  A +  ++    +D D ++V+     P + A   A G +G                             AEA A+ DPE S L++ ++ RL A    V ++ T L R  +L Q++ R LV  GL   R L  S+SA A
Sbjct:    2 EAYSLPAGVEKQLTFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTPNPEATSAAPPSIPSTPGYAVASNVGSVVGGGDDADMIMVDM----PGEAAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFE------AEAAAARDPEGSLLYQKSSMRL-AKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDASASAAA 216
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE1.510e-1232.13PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK7_ECTSI4.070e-830.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1228421..1229224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20543.1prot_S-ischiensis_contig9.20543.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1228547..1228996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.8503177-UTR-S-ischiensis_contig9:1228420..12285461622817371.8503177-UTR-S-ischiensis_contig9:1228420..1228546Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1228421..1228546 +
1695741063.541828-UTR-S-ischiensis_contig9:1228420..12285461695741063.541828-UTR-S-ischiensis_contig9:1228420..1228546Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1228421..1228546 +
1622817371.8745706-UTR-S-ischiensis_contig9:1228996..12292241622817371.8745706-UTR-S-ischiensis_contig9:1228996..1229224Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1228997..1229224 +
1695741063.5629992-UTR-S-ischiensis_contig9:1228996..12292241695741063.5629992-UTR-S-ischiensis_contig9:1228996..1229224Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1228997..1229224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.8622491-CDS-S-ischiensis_contig9:1228546..12289961622817371.8622491-CDS-S-ischiensis_contig9:1228546..1228996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1228547..1228996 +
1695741063.5519435-CDS-S-ischiensis_contig9:1228546..12289961695741063.5519435-CDS-S-ischiensis_contig9:1228546..1228996Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1228547..1228996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20543.1

>prot_S-ischiensis_contig9.20543.1 ID=prot_S-ischiensis_contig9.20543.1|Name=mRNA_S-ischiensis_contig9.20543.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
MRGGTQARRGRPEECAVLGVVGRLGLGGLCDRVVLIVIVVRGVFVTVVLG
AGRGRGARPAPGLRDGVLCGVGHLGFHDHAILVLLLFIHGIGLGGLEGVE
GPVLGGGPPAAFDSHSQGRAARAQSKGELGIGVESHVVPIPVLVREHQV*
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mRNA from alignment at S-ischiensis_contig9:1228421..1229224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20543.1 ID=mRNA_S-ischiensis_contig9.20543.1|Name=mRNA_S-ischiensis_contig9.20543.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig9:1228421..1229224+ (Schizocladia ischiensis KU_0333)
GGCAGGGGCGGAGGAGGAGGGGCGGAGGAAGCGCCTCGCGGTGAGGCCGC
GCTGGACCAGCAGGCGGGGGCGGAGCTGCAGGAGGGAAAACGCCCGCGCA
AGGTGCGTGGCGGAGATGTCCACGCCATGCGGGGCGGCACGCAGGCGCGC
CGCGGCCGTCCTGAAGAGTGCGCTGTGCTCGGGGTCGTTGGACGCCTCGG
CCTCGGCGGCCTCTGTGACCGGGTCGTCCTCATCGTCATCGTCGTTCGCG
GCGTCTTTGTTACCGTCGTCCTGGGCGCCGGCCGCGGCCGGGGCGCCCGC
CCCGCCCCTGGCCTGAGGGACGGCGTGCTGTGCGGGGTGGGACACCTGGG
TTTCCACGATCACGCAATCCTCGTCCTCCTCCTCTTCATCCATGGCATCG
GACTGGGCGGCCTGGAAGGTGTCGAAGGCCCTGTCCTGGGTGGGGGCCCG
CCCGCGGCATTTGACAGTCACTCGCAGGGGAGAGCTGCACGTGCGCAGAG
CAAGGGCGAGCTCGGCATCGGTGTCGAATCTCACGTTGTCCCCATCCCCG
TCCTTGTACGTGAACACCAGGTCTGAGGAAGGGAGGCGATACGCTTGGCG
CACTGCCTGCTCGAGAGCAGAGAATGAAGCGCCGCGTATTTCCACCATGC
GCAAGTCCCCGTCCAACACCGTCTTTATAATGACGGATTCTTTCATGGCT
GTAGCGGTGCGCCCAAGGGGCGTCCCAAATGGTAGCAGTGCCCGCTCCTG
CTCCTCTTTCCTTTTTCCCTTCTGCTCCAGGCGCTCTCCCTCCTGCCCCT
TAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1228421..1229224+

>mRNA_S-ischiensis_contig9.20543.1 ID=mRNA_S-ischiensis_contig9.20543.1|Name=mRNA_S-ischiensis_contig9.20543.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig9:1228421..1229224+ (Schizocladia ischiensis KU_0333)
ATGCGGGGCGGCACGCAGGCGCGCCGCGGCCGTCCTGAAGAGTGCGCTGT
GCTCGGGGTCGTTGGACGCCTCGGCCTCGGCGGCCTCTGTGACCGGGTCG
TCCTCATCGTCATCGTCGTTCGCGGCGTCTTTGTTACCGTCGTCCTGGGC
GCCGGCCGCGGCCGGGGCGCCCGCCCCGCCCCTGGCCTGAGGGACGGCGT
GCTGTGCGGGGTGGGACACCTGGGTTTCCACGATCACGCAATCCTCGTCC
TCCTCCTCTTCATCCATGGCATCGGACTGGGCGGCCTGGAAGGTGTCGAA
GGCCCTGTCCTGGGTGGGGGCCCGCCCGCGGCATTTGACAGTCACTCGCA
GGGGAGAGCTGCACGTGCGCAGAGCAAGGGCGAGCTCGGCATCGGTGTCG
AATCTCACGTTGTCCCCATCCCCGTCCTTGTACGTGAACACCAGGTCTGA
ATGCGGGGCGGCACGCAGGCGCGCCGCGGCCGTCCTGAAGAGTGCGCTGT
GCTCGGGGTCGTTGGACGCCTCGGCCTCGGCGGCCTCTGTGACCGGGTCG
TCCTCATCGTCATCGTCGTTCGCGGCGTCTTTGTTACCGTCGTCCTGGGC
GCCGGCCGCGGCCGGGGCGCCCGCCCCGCCCCTGGCCTGAGGGACGGCGT
GCTGTGCGGGGTGGGACACCTGGGTTTCCACGATCACGCAATCCTCGTCC
TCCTCCTCTTCATCCATGGCATCGGACTGGGCGGCCTGGAAGGTGTCGAA
GGCCCTGTCCTGGGTGGGGGCCCGCCCGCGGCATTTGACAGTCACTCGCA
GGGGAGAGCTGCACGTGCGCAGAGCAAGGGCGAGCTCGGCATCGGTGTCG
AATCTCACGTTGTCCCCATCCCCGTCCTTGTACGTGAACACCAGGTCTGA
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