mRNA_S-ischiensis_contig9.20542.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20542.1
Unique NamemRNA_S-ischiensis_contig9.20542.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: D8LFK8_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.320e-17
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   22 LGSAERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQE 213
            L S    P+VG V PGEE  +SV LVAP + G+YEG+WR  D   RRFGQRLW +V+VVG  +E
Sbjct:  133 LSSPPEAPIVGDVSPGEEATVSVDLVAPPQPGMYEGYWRACDDASRRFGQRLWAKVMVVGPGEE 196
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.260e-15
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   22 LGSAERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQE 213
            L S    P+VG V PGEE  +SV LVAP + G+YEG+WR  D   R+FGQRLW +V+VVG  +E
Sbjct:  606 LSSPPEAPIVGDVSPGEEVTVSVDLVAPPQPGMYEGYWRACDDASRKFGQRLWAKVMVVGPGEE 669
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A7S2AAX4_9EUKA (Hypothetical protein n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AAX4_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 7.690e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   58 VQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVV 198
            V PGEE E+SV++VAP   G Y GFWR+    GR+FGQR+WV++ VV
Sbjct:  158 VGPGEEVEVSVNMVAPQPPGHYVGFWRMCSPTGRKFGQRVWVKINVV 204
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: D0MQN8_PHYIT (UBA domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MQN8_PHYIT)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-9
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   31 AERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQEA 216
            A  + ++  V PG+  ++S+ +VAPA+AG Y G+WR+S   G RFGQRLWV + V+  E+ A
Sbjct:  335 APESVLIPSVLPGKSIDVSLRMVAPAKAGRYTGYWRLSTPDGNRFGQRLWVDINVMEPEEPA 396
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A2N2MJ86_9CHLR (PBPb domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A2N2MJ86_9CHLR)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-9
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   46 VVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRV 189
            + G V PG+  +LSV+L+AP EA  Y+GFW++ ++ GRRFGQ +WV +
Sbjct:  387 ISGNVSPGQTIDLSVTLIAPQEAFTYQGFWQIENIDGRRFGQTIWVGI 434
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A3M6VQ72_9STRA (UBA domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQ72_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-9
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   31 AERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQ 210
            A  + ++  V PG+  ++S+ +VAPA+AG Y G+WR+S   G RFGQRLWV + V+  E+
Sbjct:  329 APESVLIPSVLPGKSIDVSLRMVAPAKAGRYTGYWRLSTADGNRFGQRLWVDINVMDPEE 388
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A662WDN9_9STRA (UBA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDN9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-9
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   31 AERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQEA 216
            A  + ++  V PG+  ++S+ +VAPA+AG Y G+WR+S   G RFGQRLWV + V+  E  A
Sbjct:  331 APESVLIPSVLPGKSIDVSLRMVAPAKAGRYTGYWRLSTADGNRFGQRLWVDINVMEPEASA 392
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: M4B4F0_HYAAE (UBA domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4F0_HYAAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.130e-9
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   31 AERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDEQ 210
            A  + ++  V PG+  ++S+ +VAPA+AG Y G+WR+S   G RFGQRLWV + V+  E+
Sbjct:  333 APESVLIPSVLPGKSIDVSLRMVAPAKAGRYTGYWRLSTPDGNRFGQRLWVDINVMDPEE 392
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A1V9ZB25_9STRA (UBA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB25_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-8
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   31 AERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVG 201
            +ER P+   + PG+  ++SV + AP++   Y GFWR+S   G+RFGQR WV +LVVG
Sbjct:  397 SERLPIPI-LPPGKMIDVSVEMQAPSKPARYTGFWRLSSADGKRFGQRFWVDILVVG 452
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BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Match: A0A4P5UYD6_9CHLR (N_BRCA1_IG domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A4P5UYD6_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 4.290e-8
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   64 PGEETELSVSLVAPAEAGVYEGFWRVSDMQGRRFGQRLWVRVLVVGDE 207
            PG    ++VS+VAPA AG YEG+WR+SD +G  FG RL++++ V   +
Sbjct:   91 PGTLAVVNVSMVAPAAAGDYEGYWRLSDAKGEPFGSRLYIKITVAAPQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFK8_ECTSI5.320e-1756.25N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTZ0_9PHAE1.260e-1554.69PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2AAX4_9EUKA7.690e-1057.45Hypothetical protein n=1 Tax=Stereomyxa ramosa Tax... [more]
D0MQN8_PHYIT1.140e-945.16UBA domain-containing protein n=13 Tax=Phytophthor... [more]
A0A2N2MJ86_9CHLR1.150e-950.00PBPb domain-containing protein n=2 Tax=Chloroflexi... [more]
A0A3M6VQ72_9STRA1.560e-945.00UBA domain-containing protein n=1 Tax=Peronospora ... [more]
A0A662WDN9_9STRA1.560e-945.16UBA domain-containing protein n=2 Tax=Nothophytoph... [more]
M4B4F0_HYAAE2.130e-945.00UBA domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A1V9ZB25_9STRA1.920e-847.37UBA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A4P5UYD6_9CHLR4.290e-847.92N_BRCA1_IG domain-containing protein n=1 Tax=Anaer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1225159..1226970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog2880.D8LFK8
KEGG koko:K17987
KEGG Pathwayko04137,map04137
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031982,GO:0032182,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0051258,GO:0051259,GO:0061919,GO:0065003,GO:0071840,GO:0097708
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG4351@1,KOG4351@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001850.1
Exons2
Model size217
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817384.5871186-CDS-S-ischiensis_contig9:1225159..12252221622817384.5871186-CDS-S-ischiensis_contig9:1225159..1225222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1225160..1225222 -
1695741073.159107-CDS-S-ischiensis_contig9:1225159..12252221695741073.159107-CDS-S-ischiensis_contig9:1225159..1225222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1225160..1225222 -
1622817384.600376-CDS-S-ischiensis_contig9:1226817..12269701622817384.600376-CDS-S-ischiensis_contig9:1226817..1226970Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1226818..1226970 -
1695741073.1788857-CDS-S-ischiensis_contig9:1226817..12269701695741073.1788857-CDS-S-ischiensis_contig9:1226817..1226970Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1226818..1226970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20542.1prot_S-ischiensis_contig9.20542.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1225160..1226970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20542.1

>prot_S-ischiensis_contig9.20542.1 ID=prot_S-ischiensis_contig9.20542.1|Name=mRNA_S-ischiensis_contig9.20542.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=72bp
GRGRGVGLGSAERTPVVGGVQPGEETELSVSLVAPAEAGVYEGFWRVSDM
QGRRFGQRLWVRVLVVGDEQEA
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mRNA from alignment at S-ischiensis_contig9:1225159..1226970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20542.1 ID=mRNA_S-ischiensis_contig9.20542.1|Name=mRNA_S-ischiensis_contig9.20542.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1812bp|location=Sequence derived from alignment at S-ischiensis_contig9:1225159..1226970- (Schizocladia ischiensis KU_0333)
GGGCGGGGCCGGGGCGTCGGGCTCGGGTCTGCGGAGCGCACGCCGGTGGT
GGGAGGCGTGCAGCCGGGGGAGGAGACAGAGCTGTCTGTGAGCCTGGTGG
CGCCCGCTGAGGCGGGGGTGTACGAGGGGTTCTGGCGCGTGTCGGACATG
CAGGTGGGTTGTGCGTAAGAAGCAATTTTGTGGGGATGATTCATATGCAT
TGTAACGAGGTACAATCGCACGTGTTTGTGATTGACTGTTCTCGTATGAG
TAGTTGTCCCATTAAGAGTGGAGTGTTCTTATATTGGTGACTATCACATC
AAGGAACTAAGGAACTATGCTTGTGTGGGGGTGTTGTTGCTTGCTTTGGC
TGTGTTTGTTTTTCTCCTCCTCCTCCTCCTTCTCCTTCTGGGGCCCGTCT
TGGGTGTCGGCCAAGCTGGCCTCTTTTCTTTGTGTGCCACTTCTCTTGTT
TGTGCAGAAGTGGTACAGGAGCAGTGCAGTTTGCATCGGCGGTCCTCGCG
GTTTAGCGCCGGGGGGTTCGCACTGCTCCTACACACAAGGTCCCAGGTTC
GAGTCTGGGTGGCGCAACACAAATAGTATAGTATACAGAAATCTTTTATT
GTCTCCGGGACGGCCGGAGCCCCTCCGATATTCCTATATCTCACACTATG
TTAGTTGGTTTCGTGTACTGTAAGTACGTAGACAGTGCTAGTTGGGAGAA
TGTGTTGTAACGCCCGGCAGTTGAGTGAATGGCTCTAGAGTGTATAGCTA
TCTTGTTGCTGAAGCGGGTCTTTTTTTCTTCTTTTTTTTTTGTTTTCGGG
CGAGCAAACGCCTTTTTGGTGAACGCCGTCCGATACACCAAGGCTCTCGC
GACTGTGATGTGACGCTCACACCACAGTACACTAGAGTACACATCACATC
ACATCACAGCACATCATGCTGCAGTCGCGCCACAGTACATTTCCATAGAG
TACACATCACATCACAACACATCACATCACATCACATCATGCTGCAGTGG
GGACCCCCGGGGCCGTTCTGGGCGAGAGCGAATGCCTCCCTGCTTTGTGC
GCCATCCGACCGAGACCATTGGCCATACGCCCCTCGACCGAGACGGAGCA
GTGAGTATGCACACCTACAAGTATATATATGTACAGTATCGACAGAGACG
CGTGGTCAATGGTCTCGGGACTACGGCAAGCACCGCGTGAGTACATATAT
ATATATGTGTGTGTGTGTGTGTGTGTACAGCTCCGCCTTGAACGAGGCGC
GGGGTCAATGGTCTCGGGACTACGGCAAGCACCGGAGCTCGAAGAAGGGT
TAAGGTTTACCAAGCTTGTGGCAGGCAATTCCTCCTGTGCGGCACATCTC
GACGCTCTTTATTGATTGAATGCTGGCCGGTGCAAACCCGGCATGCTCGC
TCCGTCCCGGCTAACTCCATGGCTAAATAGCCACTCCTGTCGGAGGGCAA
ACCCGAAGTTTTGACTTAGGGCTGTCGGCATTGCACGCAAGGTTATGTCG
CAAGATAAGCCAATGAGTACCTATATACATACGAATATATATATAGATAT
ATATCACCCCCTCCCACCCTGGCTCTGCCGGGGGAGGGAGGGGTCCTGCT
CCGTCTCGCCCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCAC
AATGTGAGTACGTACTCGCACATAGATATATAGAGCTCTATATATGTGTG
TGTGTCTGATACATACATGTCTCCTGCTTGCGACCGTACATTTGGCAGGG
GCGGCGCTTCGGCCAGCGGCTGTGGGTCAGGGTCCTGGTGGTGGGCGACG
AGCAGGAGGCTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1225159..1226970-

>mRNA_S-ischiensis_contig9.20542.1 ID=mRNA_S-ischiensis_contig9.20542.1|Name=mRNA_S-ischiensis_contig9.20542.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig9:1225159..1226970- (Schizocladia ischiensis KU_0333)
GGGCGGGGCCGGGGCGTCGGGCTCGGGTCTGCGGAGCGCACGCCGGTGGT
GGGAGGCGTGCAGCCGGGGGAGGAGACAGAGCTGTCTGTGAGCCTGGTGG
CGCCCGCTGAGGCGGGGGTGTACGAGGGGTTCTGGCGCGTGTCGGACATG
CAGGGGCGGGGCCGGGGCGTCGGGCTCGGGTCTGCGGAGCGCACGCCGGT
GGTGGGAGGCGTGCAGCCGGGGGAGGAGACAGAGCTGTCTGTGAGCCTGG
TGGCGCCCGCTGAGGCGGGGGTGTACGAGGGGTTCTGGCGCGTGTCGGAC
ATGCAGGGGCGGCGCTTCGGCCAGCGGCTGTGGGTCAGGGTCCTGGTGGT
GGGCGACGAGCAGGAGGCTGGGCGGCGCTTCGGCCAGCGGCTGTGGGTCA
GGGTCCTGGTGGTGGGCGACGAGCAGGAGGCT
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