mRNA_S-ischiensis_contig9.20541.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20541.1
Unique NamemRNA_S-ischiensis_contig9.20541.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1223959..1224806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size848
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20541.1prot_S-ischiensis_contig9.20541.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1224042..1224485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.790148-UTR-S-ischiensis_contig9:1223958..12240411622817371.790148-UTR-S-ischiensis_contig9:1223958..1224041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1223959..1224041 +
1695741063.5086412-UTR-S-ischiensis_contig9:1223958..12240411695741063.5086412-UTR-S-ischiensis_contig9:1223958..1224041Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1223959..1224041 +
1622817371.8164303-UTR-S-ischiensis_contig9:1224485..12248061622817371.8164303-UTR-S-ischiensis_contig9:1224485..1224806Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1224486..1224806 +
1695741063.531322-UTR-S-ischiensis_contig9:1224485..12248061695741063.531322-UTR-S-ischiensis_contig9:1224485..1224806Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1224486..1224806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.8040557-CDS-S-ischiensis_contig9:1224041..12244851622817371.8040557-CDS-S-ischiensis_contig9:1224041..1224485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1224042..1224485 +
1695741063.521333-CDS-S-ischiensis_contig9:1224041..12244851695741063.521333-CDS-S-ischiensis_contig9:1224041..1224485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1224042..1224485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20541.1

>prot_S-ischiensis_contig9.20541.1 ID=prot_S-ischiensis_contig9.20541.1|Name=mRNA_S-ischiensis_contig9.20541.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=148bp
MQDSPPFSSLPPATPPSSTAAGTTGGGGVHLLLTKHMLQSNSWRTPMPRA
RPLYLAPLLYSYNNTACLVYPTPALYCSVCSTGWRTYTSPCSRCARLGPE
TMGRDPQAAGPNSLRRYCSGTSLLARGLELAAYLPLKIDRYDSPRHI*
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mRNA from alignment at S-ischiensis_contig9:1223959..1224806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20541.1 ID=mRNA_S-ischiensis_contig9.20541.1|Name=mRNA_S-ischiensis_contig9.20541.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=848bp|location=Sequence derived from alignment at S-ischiensis_contig9:1223959..1224806+ (Schizocladia ischiensis KU_0333)
ATACGAAGCACACACATCAGAGCAATGTTTCACTCGACAGTGCTTACCCC
AAGTTTCATCGAGAGCACCCAGCTCGGTCAGACATGCAAGACTCACCCCC
ATTCTCCTCCCTCCCTCCCGCCACACCCCCCAGCAGCACCGCAGCTGGGA
CCACGGGTGGCGGAGGCGTGCACTTACTACTTACGAAGCACATGCTTCAG
AGTAATTCGTGGCGGACCCCCATGCCACGGGCCCGGCCACTGTATCTTGC
CCCGCTGCTCTACTCGTACAACAACACCGCATGCTTAGTATACCCTACTC
CTGCACTGTACTGTTCTGTATGCAGTACCGGGTGGCGCACCTACACTTCA
CCATGCTCGCGCTGCGCTCGCCTCGGCCCTGAGACCATGGGCCGGGACCC
GCAGGCGGCCGGCCCGAACTCCCTGCGTAGATACTGTTCTGGGACGAGCC
TTTTGGCACGGGGCCTGGAACTCGCCGCTTATCTACCACTCAAAATAGAT
AGATACGATAGCCCACGCCACATATAGGCAACTCGCCGCTTATCTACCCC
TCAAAATAGACAAGATAGCCCACACCACCTACAGCTTGCAGAAGAGGAGA
GGCTCCCCCGCCCGCTCGCCTGCCCGCCTCCATGCAGAAGGGAAGGGCGG
AAGGGCGAGACGACACGTGTCTCGAGCGTGCCGCCACCGCGGCCGCTGCC
GCTGCCGCCGCCGCCGCTGTCTGTCGACGGCAGCAGACAAGACAAGGCAG
GCAGGCAGACAGGCAAGCAGCCAGCGGCCGCTTTCAGTCCTTGTTCCCGT
TGTCCAAGGACAGGCCTCTCCACAGCTGCAATAACTCTTGGTCGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1223959..1224806+

>mRNA_S-ischiensis_contig9.20541.1 ID=mRNA_S-ischiensis_contig9.20541.1|Name=mRNA_S-ischiensis_contig9.20541.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=888bp|location=Sequence derived from alignment at S-ischiensis_contig9:1223959..1224806+ (Schizocladia ischiensis KU_0333)
ATGCAAGACTCACCCCCATTCTCCTCCCTCCCTCCCGCCACACCCCCCAG
CAGCACCGCAGCTGGGACCACGGGTGGCGGAGGCGTGCACTTACTACTTA
CGAAGCACATGCTTCAGAGTAATTCGTGGCGGACCCCCATGCCACGGGCC
CGGCCACTGTATCTTGCCCCGCTGCTCTACTCGTACAACAACACCGCATG
CTTAGTATACCCTACTCCTGCACTGTACTGTTCTGTATGCAGTACCGGGT
GGCGCACCTACACTTCACCATGCTCGCGCTGCGCTCGCCTCGGCCCTGAG
ACCATGGGCCGGGACCCGCAGGCGGCCGGCCCGAACTCCCTGCGTAGATA
CTGTTCTGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGCTTATC
TACCACTCAAAATAGATAGATACGATAGCCCACGCCACATATAGATGCAA
GACTCACCCCCATTCTCCTCCCTCCCTCCCGCCACACCCCCCAGCAGCAC
CGCAGCTGGGACCACGGGTGGCGGAGGCGTGCACTTACTACTTACGAAGC
ACATGCTTCAGAGTAATTCGTGGCGGACCCCCATGCCACGGGCCCGGCCA
CTGTATCTTGCCCCGCTGCTCTACTCGTACAACAACACCGCATGCTTAGT
ATACCCTACTCCTGCACTGTACTGTTCTGTATGCAGTACCGGGTGGCGCA
CCTACACTTCACCATGCTCGCGCTGCGCTCGCCTCGGCCCTGAGACCATG
GGCCGGGACCCGCAGGCGGCCGGCCCGAACTCCCTGCGTAGATACTGTTC
TGGGACGAGCCTTTTGGCACGGGGCCTGGAACTCGCCGCTTATCTACCAC
TCAAAATAGATAGATACGATAGCCCACGCCACATATAG
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