mRNA_S-ischiensis_contig9.20540.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20540.1
Unique NamemRNA_S-ischiensis_contig9.20540.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1222674..1223554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size881
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20540.1prot_S-ischiensis_contig9.20540.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1222818..1223363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.73831-UTR-S-ischiensis_contig9:1222673..12228171622817371.73831-UTR-S-ischiensis_contig9:1222673..1222817Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1222674..1222817 +
1695741063.472897-UTR-S-ischiensis_contig9:1222673..12228171695741063.472897-UTR-S-ischiensis_contig9:1222673..1222817Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1222674..1222817 +
1622817371.760782-UTR-S-ischiensis_contig9:1223363..12235541622817371.760782-UTR-S-ischiensis_contig9:1223363..1223554Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1223364..1223554 +
1695741063.4967878-UTR-S-ischiensis_contig9:1223363..12235541695741063.4967878-UTR-S-ischiensis_contig9:1223363..1223554Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1223364..1223554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.749513-CDS-S-ischiensis_contig9:1222817..12233631622817371.749513-CDS-S-ischiensis_contig9:1222817..1223363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1222818..1223363 +
1695741063.485005-CDS-S-ischiensis_contig9:1222817..12233631695741063.485005-CDS-S-ischiensis_contig9:1222817..1223363Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1222818..1223363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20540.1

>prot_S-ischiensis_contig9.20540.1 ID=prot_S-ischiensis_contig9.20540.1|Name=mRNA_S-ischiensis_contig9.20540.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=182bp
MHAKVGKRNRDPKGNQAGPLPATCTHSSTPVRPRASGVRVHSPTQTTLPL
QWTAHAARPPAAVRPRPPPLPLSCHLPLPVPALVQVGPGTFADKLGTYLS
TRVQYFVLANGGPIWIDATTTPRVGGWVAARATGATESPCNLRSNQQQLE
TLALPRPCPPCTTAVLLRLLSIHLADASLHS*
back to top

mRNA from alignment at S-ischiensis_contig9:1222674..1223554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20540.1 ID=mRNA_S-ischiensis_contig9.20540.1|Name=mRNA_S-ischiensis_contig9.20540.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=881bp|location=Sequence derived from alignment at S-ischiensis_contig9:1222674..1223554+ (Schizocladia ischiensis KU_0333)
GGTCTTGTGGGGCTGAAACCCACTTTTAATTTTTTTCATGTTTTTCGACG
ACAAACACAAAACACACAGGCAGGCCCGGTCTCGACGAGTGAGACACGCC
AGCCATCACTCCAAGACGACTATTGTGCAGCACATGCCACCTGAATGCAC
GCAAAAGTCGGCAAACGCAACCGTGACCCAAAAGGAAACCAGGCAGGGCC
ATTGCCCGCTACATGCACTCATTCTTCCACCCCTGTACGGCCCCGAGCCT
CCGGAGTCCGAGTGCATTCTCCTACCCAAACAACTCTACCCTTGCAGTGG
ACGGCACATGCCGCTCGCCCCCCCGCTGCTGTACGACCGCGCCCCCCCCC
ATTGCCTCTCTCTTGCCACCTCCCGCTCCCTGTTCCGGCCTTGGTTCAGG
TCGGTCCGGGAACTTTTGCTGACAAATTAGGCACCTACTTGAGTACTCGA
GTACAGTACTTCGTACTTGCCAACGGAGGCCCCATCTGGATCGACGCAAC
AACAACACCAAGGGTGGGTGGGTGGGTGGCCGCGCGGGCAACGGGCGCCA
CGGAGTCTCCGTGTAACCTCCGCAGCAACCAGCAACAACTCGAAACGCTT
GCACTCCCCAGGCCGTGCCCGCCATGTACTACTGCAGTACTGCTACGCCT
GCTAAGCATACACCTTGCAGACGCAAGCTTGCATTCTTAACTCTTACTCG
TACAATGGTAGACTACAATACACAGTGCTTGGCGTGGAGCGGACGCTGCC
ACAGCCGCAGGCACCGCTGCTGCTGTGGTAGCGGCGGCGGTCGTACTGAC
TTCGTGTGCCATGTGCTAAGATACTCATCGCTCTCTCTCTCTCTCTCTCT
CTATATATATATATATATATATATATTGCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1222674..1223554+

>mRNA_S-ischiensis_contig9.20540.1 ID=mRNA_S-ischiensis_contig9.20540.1|Name=mRNA_S-ischiensis_contig9.20540.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1092bp|location=Sequence derived from alignment at S-ischiensis_contig9:1222674..1223554+ (Schizocladia ischiensis KU_0333)
ATGCACGCAAAAGTCGGCAAACGCAACCGTGACCCAAAAGGAAACCAGGC
AGGGCCATTGCCCGCTACATGCACTCATTCTTCCACCCCTGTACGGCCCC
GAGCCTCCGGAGTCCGAGTGCATTCTCCTACCCAAACAACTCTACCCTTG
CAGTGGACGGCACATGCCGCTCGCCCCCCCGCTGCTGTACGACCGCGCCC
CCCCCCATTGCCTCTCTCTTGCCACCTCCCGCTCCCTGTTCCGGCCTTGG
TTCAGGTCGGTCCGGGAACTTTTGCTGACAAATTAGGCACCTACTTGAGT
ACTCGAGTACAGTACTTCGTACTTGCCAACGGAGGCCCCATCTGGATCGA
CGCAACAACAACACCAAGGGTGGGTGGGTGGGTGGCCGCGCGGGCAACGG
GCGCCACGGAGTCTCCGTGTAACCTCCGCAGCAACCAGCAACAACTCGAA
ACGCTTGCACTCCCCAGGCCGTGCCCGCCATGTACTACTGCAGTACTGCT
ACGCCTGCTAAGCATACACCTTGCAGACGCAAGCTTGCATTCTTAAATGC
ACGCAAAAGTCGGCAAACGCAACCGTGACCCAAAAGGAAACCAGGCAGGG
CCATTGCCCGCTACATGCACTCATTCTTCCACCCCTGTACGGCCCCGAGC
CTCCGGAGTCCGAGTGCATTCTCCTACCCAAACAACTCTACCCTTGCAGT
GGACGGCACATGCCGCTCGCCCCCCCGCTGCTGTACGACCGCGCCCCCCC
CCATTGCCTCTCTCTTGCCACCTCCCGCTCCCTGTTCCGGCCTTGGTTCA
GGTCGGTCCGGGAACTTTTGCTGACAAATTAGGCACCTACTTGAGTACTC
GAGTACAGTACTTCGTACTTGCCAACGGAGGCCCCATCTGGATCGACGCA
ACAACAACACCAAGGGTGGGTGGGTGGGTGGCCGCGCGGGCAACGGGCGC
CACGGAGTCTCCGTGTAACCTCCGCAGCAACCAGCAACAACTCGAAACGC
TTGCACTCCCCAGGCCGTGCCCGCCATGTACTACTGCAGTACTGCTACGC
CTGCTAAGCATACACCTTGCAGACGCAAGCTTGCATTCTTAA
back to top