mRNA_S-ischiensis_contig9.20534.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20534.1
Unique NamemRNA_S-ischiensis_contig9.20534.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: I2CNZ6_NANGC (Endonuclease exonuclease phosphatase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CNZ6_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 2.290e-9
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    7 GVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVD 159
            G R PS+TDRILFHS+AD    L   AYE CD+L GSDHRPVS A  LR++
Sbjct:   50 GQRVPSYTDRILFHSLADVRGSLSLVAYELCDALTGSDHRPVSAAFELRLN 100
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A4D9D6U1_9STRA (IPPc domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6U1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.540e-9
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    7 GVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVD 159
            G R PS+TDRILFHS+AD    L   AYE CD+L GSDHRPVS A  LR++
Sbjct: 1103 GQRVPSYTDRILFHSLADVRGSLSLVAYELCDALTGSDHRPVSAAFELRLN 1153
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A1V9ZL31_9STRA (IPPc domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL31_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.120e-8
Identity = 50/142 (35.21%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:    4 AGVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVDPCVGQRP--QRRGVAAMSRARLTLSGLGA--EGLLGEDAQAMGISSLS------------------LVFPLPSEDPLLHQRKVVATAEML 363
            A  R PS+TDRIL+HS+ D   RL+P +Y  C+ +  SDH+PVS      V+   G RP  Q+R   A+S   +T S   +  E    +D QA      S                  ++FPLP ED  LHQR +   A  L
Sbjct:  645 ASERVPSYTDRILYHSLPDLKDRLVPVSYTSCERVGVSDHKPVSCLFEAYVERG-GARPRAQQRCTVALSHIEITWSSGDSDLERDTFKDDQAFKADQASAKSGTTDSAASDDALEARVLFPLPCEDDYLHQRLLEEMAGRL 785
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A067CHQ2_SAPPC (IPPc domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHQ2_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 3.940e-8
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 1 
Query:    4 AGVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVDP---CVGQ--RPQRRGVAAMSRARLTLSGLGAEGLLGE-------------DAQAMGISSLSLV---------FPLPSEDPLLHQRKVVATAEML 363
            A  R PS+TDR+LFHS+ D   RL P AY  C+ +  SDH+PVS      V+    C+    + Q+R    +S   +T SG     +  +              A++    S+ L+         FPLP ED  LHQR +   A  L
Sbjct:  634 AAERVPSYTDRVLFHSLPDLRERLTPVAYHSCEHITVSDHKPVSCLFEAYVEQGSRCLDSNLKAQKRCTVTLSHIEITWSGQNDTDVERDTFKDDSAPKTDQSSARSGTTDSVLLIDDSVEARVLFPLPCEDDYLHQRLLEEMAGRL 780
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A7S2BYH3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYH3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.660e-7
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    4 AGVRRPSWTDRILFHSMADKAHRL--IPGAYERCDSLLGSDHRPVSLALRLRVDPCVGQRPQRRGVAAMSRARLTLSGLGAEGL-LGEDAQAMGISSLSL 294
            AG R PS+TDR+L HS+ D+   L    G Y+ CD +L SDHRPV+L   L VD     RP+ +GV A +R+      LGA  L L     A G  +L L
Sbjct:   68 AGARPPSYTDRVLVHSLPDQKLFLDITGGTYDLCDDVLASDHRPVALTCALGVDASYS-RPK-KGVKATNRSSYYYVHLGAPELDLKSPRAAKGHMALDL 165
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A4D9D3U3_9STRA (IPPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3U3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.230e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   13 RRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRL 150
            R PSWTDR+L+HS+      L   AY+ CD+++GSDHRP+  A RL
Sbjct:  900 RPPSWTDRVLYHSLPGMEGMLELEAYDMCDAIVGSDHRPIVAAFRL 945
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A1W0A463_9STRA (IPPc domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A463_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-6
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 1 
Query:   13 RRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVDPCVGQRPQRRGVAAMSRARLTLSGL---------GAEGLLGEDAQAMGISSLS-------------------LVFPLPSEDPLLHQRKVVATAEML 363
            R PS+TDRIL+HS+ D   RL+P  YE  + +  SDH+PVS    + V+   G   +      +  +++ ++ +         GA  L+ ++      SS+S                   +VFPLP ED  LH R +   A  L
Sbjct: 1692 RVPSYTDRILYHSLPDLKGRLVPLWYESTEQITVSDHKPVSCLFEVYVERGGGSNKKTPSQCTVVLSQIEITWMCGDTDNEREGANALIKDEHAKTEKSSMSAKSWSTESGIVNQEELEARIVFPLPCEDEQLHSRMLEEMAGRL 1836
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A7S3MBG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBG7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.770e-6
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   10 VRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVD 159
            +R PS+TDRIL HS+ D+  R+   AY+ CD L  SDHR VS+ +RL V+
Sbjct:  269 LRPPSYTDRILIHSLPDRQDRVTVQAYDFCDRLRVSDHRAVSMTVRLEVN 318
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BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: W7U973_9STRA (Phosphatidylinositol--trisphosphate 5-phosphatase 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U973_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.050e-6
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 GVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVD 159
            G R PS+TDRILFHS++D    L   AY  C+ + GSDHRPVS A +L V+
Sbjct:  862 GERVPSYTDRILFHSLSDVRCYLRLIAYRMCEHVRGSDHRPVSAAFQLTVN 912
[Close]
BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Match: A0A4D9DD78_9STRA (IPPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD78_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-6
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 GVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRLRVD 159
            G R PS+TDRILFHS++D    L   AY  C+ + GSDHRPVS A +L V+
Sbjct: 1263 GERVPSYTDRILFHSLSDVRCYLRLIAYRMCEHVRGSDHRPVSAAFQLTVN 1313
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
I2CNZ6_NANGC2.290e-962.75Endonuclease exonuclease phosphatase family protei... [more]
A0A4D9D6U1_9STRA2.540e-962.75IPPc domain-containing protein n=2 Tax=Nannochloro... [more]
A0A1V9ZL31_9STRA2.120e-835.21IPPc domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A067CHQ2_SAPPC3.940e-831.97IPPc domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A7S2BYH3_9STRA1.660e-743.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D3U3_9STRA1.230e-652.17IPPc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A1W0A463_9STRA2.300e-628.97IPPc domain-containing protein n=1 Tax=Thraustothe... [more]
A0A7S3MBG7_9STRA2.770e-652.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7U973_9STRA3.050e-654.90Phosphatidylinositol--trisphosphate 5-phosphatase ... [more]
A0A4D9DD78_9STRA3.110e-654.90IPPc domain-containing protein n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1164639..1166888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog112098.XP_008610687.1
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20534.1prot_S-ischiensis_contig9.20534.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1164639..1166888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817383.9335275-CDS-S-ischiensis_contig9:1164638..11647681622817383.9335275-CDS-S-ischiensis_contig9:1164638..1164768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1164639..1164768 -
1695741072.603632-CDS-S-ischiensis_contig9:1164638..11647681695741072.603632-CDS-S-ischiensis_contig9:1164638..1164768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1164639..1164768 -
1622817383.9488711-CDS-S-ischiensis_contig9:1165541..11657341622817383.9488711-CDS-S-ischiensis_contig9:1165541..1165734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1165542..1165734 -
1695741072.6146626-CDS-S-ischiensis_contig9:1165541..11657341695741072.6146626-CDS-S-ischiensis_contig9:1165541..1165734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1165542..1165734 -
1622817383.9632063-CDS-S-ischiensis_contig9:1166806..11668881622817383.9632063-CDS-S-ischiensis_contig9:1166806..1166888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1166807..1166888 -
1695741072.6236095-CDS-S-ischiensis_contig9:1166806..11668881695741072.6236095-CDS-S-ischiensis_contig9:1166806..1166888Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1166807..1166888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20534.1

>prot_S-ischiensis_contig9.20534.1 ID=prot_S-ischiensis_contig9.20534.1|Name=mRNA_S-ischiensis_contig9.20534.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
MAGVRRPSWTDRILFHSMADKAHRLIPGAYERCDSLLGSDHRPVSLALRL
RVDPCVGQRPQRRGVAAMSRARLTLSGLGAEGLLGEDAQAMGISSLSLVF
PLPSEDPLLHQRKVVATAEMLGPEPEDDTRLPPPG
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mRNA from alignment at S-ischiensis_contig9:1164639..1166888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20534.1 ID=mRNA_S-ischiensis_contig9.20534.1|Name=mRNA_S-ischiensis_contig9.20534.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2250bp|location=Sequence derived from alignment at S-ischiensis_contig9:1164639..1166888- (Schizocladia ischiensis KU_0333)
ATGGCGGGTGTGCGGCGGCCCTCGTGGACGGACCGCATCCTTTTCCATTC
CATGGCGGATAAGGCGCACCGCCTCATTCCAGGTGGAGTACCTGGTACCG
TAATCGTCGGACAGATTTTTCCCCCGCGGGCCAATTTTCGGGGGAATGTT
TCTCGCCGGGAAGGTCCTGAATTGTCCTGAAAGCCCCTCGGAAGAGTCCC
CCCAGGTCCCGAGGGAGATTTTCCGAGTTTTCCGTGCGTGAATCCGACCA
GTGTTCGGCGAGAAAAGTTCTACCGAAAATTGGCATGGGGGGGCCAGATC
TCTCCGATGATTACGGTATGTATGTATGGCGGCACCAAAGTGTCGCCCTT
GTCCTTGTCAATTGTTGTTGTCGTGGCGATTCGTATAAATGGTAGCGAGG
TACAATCGCACGTATGTGAGATGGAGTGTTCTCGTATTAGTGGGTAGCGT
TGTTGTCGTGGTGTGTGCTGCCGTTGCTGTGATCGTCGCCATCGTCACCG
TCGCCATTCCCCGCTGTCGCCGAGTTGCTCCTGTTGCTGCTGCCGCATTA
ACGAACGCCTTCTGCTGTAAGATTCAGTAAGATACAGTAGAAAATACAGT
AAGATACACTAGTGGAGTACACTGCAGTAGCACCCCCAGCCCTACTTGTA
CCTAGACGTGTATCCCCCCCCCCCCCCCCCCCCCGGAGGGCCGTACGAGC
GTTGCGACTCTCTGCTGGGGTCCGACCACCGTCCAAGTACTGCTGCTAGT
GGAGTACTCTACAGTACACTACAGTACAGTAGCATCCCCGGCCCTACCTA
GACGTGTGTACCCCCCCCCCCCCGCAGGGGCATACGAGCGTTGCGACTCT
CTGCTGGGGTCCGACCACCGTCCAAGCACTGCTGCTCCTGTACTGTAGTG
GAGTACTCTACAGTAGCACCCCCAGCCCTACCTAGACGTGTGTACTTACC
CCCCCCCATACGAGCGTTGCGACTCTCTGCTGGGGTCCGACCTACTTAGA
TGTGTGTACTACGATCGAGAGTAGTATATAGCTCTAGGTGTTGAAAACGT
GTTGTCAACTGACTCGGTCTCGTTCACGAGTTACGATTCGGGAATCGCCA
ACACCTATATACTACTCCCTACCGTAGTACTTACCACCCCCCCCCCCCCC
GCAGGGGCGTACGAGCGTTGCGACTCCCTGCTGGGGTCCGACCACCGGCC
CGTGAGCCTGGCTCTGCGGCTCCGGGTGGATCCCTGCGTGGGGCAGCGTC
CGCAGCGGAGGGGCGTGGCGGCAATGTCTAGGGCCCGGCTGACACTGTCG
GGCCTGGGCGCGGAGGGGCTGTTAGGAGAGGATGCCCAGGCGATGGGGTG
AGCAATGTCAAACCTACGATCGGGAGTGTTGTAAGGAACAAAGGATGCCC
AGGCGATGGGGTGAGCAATGTCAAACCTACGATCGGGAGTGTTGTAAGGA
AGAACACGGGGCGAGGTGAAGGCCACATCACTAGAGACCTCAGCAGTGGC
CCTTCCTTAGCTTGCCAGGGGAAATTTATGCGGGGAAAGGGAGACGAGGA
GGGGGGGGGGGGGAGTAGTCTACTACGTAGTATAGGTGTTGACAACGCGT
TGATAGGCCGAATTTGGCCTCCGACCCCGAAAAAGAAAAGTTGATCATAA
GAAAATTAACTACTCCCTACTTTAGTAGGGCCCGGCTGACCCTCTCGGGC
CTGCGTGTAGAGGGGCTGGCCGGGGAGGACGCACAGGCCATGGGGTGAGT
GATATCAAACCACAGCCAAACCACAGTACGCTCCTCCTCCCCGTCCACCC
CCCCTCCTCCTCTTCTCCCCTTCCCTGCACAAATTCCGCCTGGCGAGCTA
AGTTATAAGGAAGGGCCACTGCTAACGTCTCTAGTGACGTGGCCCGCACC
TCGCCCCGTGTTGTTCCTGTTAACACATCAATCACATGACATGACACCGT
ACCATAATCGGAGGGCCAACTTGGAGCTGACGTTGGGTTGTCGACCGCAC
CTACACGTCGGATGTGATGCCATGTCATGTCAAACCACGGCCAAACCACC
ACCACCACCACCACCACCACCACAGCCACCAACACTCCCACCATCACCAC
CGTGAACCTCTCCCGCGCAGCATCTCCTCCTTGTCTCTGGTCTTCCCCCT
GCCCTCGGAGGACCCCCTCCTCCACCAACGCAAGGTCGTGGCCACCGCAG
AGATGCTGGGCCCGGAGCCCGAGGACGACACACGCCTCCCACCCCCAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1164639..1166888-

>mRNA_S-ischiensis_contig9.20534.1 ID=mRNA_S-ischiensis_contig9.20534.1|Name=mRNA_S-ischiensis_contig9.20534.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig9:1164639..1166888- (Schizocladia ischiensis KU_0333)
ATGGCGGGTGTGCGGCGGCCCTCGTGGACGGACCGCATCCTTTTCCATTC
CATGGCGGATAAGGCGCACCGCCTCATTCCAGATGGCGGGTGTGCGGCGG
CCCTCGTGGACGGACCGCATCCTTTTCCATTCCATGGCGGATAAGGCGCA
CCGCCTCATTCCAGGGGCGTACGAGCGTTGCGACTCCCTGCTGGGGTCCG
ACCACCGGCCCGTGAGCCTGGCTCTGCGGCTCCGGGTGGATCCCTGCGTG
GGGCAGCGTCCGCAGCGGAGGGGCGTGGCGGCAATGTCTAGGGCCCGGCT
GACACTGTCGGGCCTGGGCGCGGAGGGGCTGTTAGGAGAGGATGCCCAGG
CGATGGGGGGCGTACGAGCGTTGCGACTCCCTGCTGGGGTCCGACCACCG
GCCCGTGAGCCTGGCTCTGCGGCTCCGGGTGGATCCCTGCGTGGGGCAGC
GTCCGCAGCGGAGGGGCGTGGCGGCAATGTCTAGGGCCCGGCTGACACTG
TCGGGCCTGGGCGCGGAGGGGCTGTTAGGAGAGGATGCCCAGGCGATGGG
CATCTCCTCCTTGTCTCTGGTCTTCCCCCTGCCCTCGGAGGACCCCCTCC
TCCACCAACGCAAGGTCGTGGCCACCGCAGAGATGCTGGGCCCGGAGCCC
GAGGACGACACACGCCTCCCACCCCCAGGCCATCTCCTCCTTGTCTCTGG
TCTTCCCCCTGCCCTCGGAGGACCCCCTCCTCCACCAACGCAAGGTCGTG
GCCACCGCAGAGATGCTGGGCCCGGAGCCCGAGGACGACACACGCCTCCC
ACCCCCAGGC
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