mRNA_S-ischiensis_contig9.20524.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20524.1
Unique NamemRNA_S-ischiensis_contig9.20524.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A7S2XW71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW71_9STRA)

HSP 1 Score: 190 bits (483), Expect = 5.100e-56
Identity = 93/159 (58.49%), Postives = 119/159 (74.84%), Query Frame = 1 
Query:   22 MHTVARKLSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIFRI-GQQTFIHSDLPGIEKPKIVPAGDDAREFIKSTPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGEPEDEEA 495
            ++   R+LSD GMYI+ + D++PAGVL++AYN+ T  +Y LSPSE EL  AGLSR +EDL  L  S+D+  + G +TF+ S L GI+ PK++P G +A +FIKS P G   LPELLTTALSELCKVKP GL+AVRWLG+WL+ NNPN+P I EP  EEA
Sbjct:    6 LYVQGRQLSDGGMYIISVTDLDPAGVLIKAYNQVTSSEYYLSPSEDELEEAGLSRQKEDLKTLVESIDLTELSGGRTFLRSSLAGIKDPKVIPQGAEAAQFIKSIPAGTDTLPELLTTALSELCKVKPSGLDAVRWLGQWLLENNPNQPQIEEPIVEEA 164
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A7S2WUZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUZ4_9STRA)

HSP 1 Score: 177 bits (449), Expect = 7.170e-51
Identity = 86/159 (54.09%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:   10 KATAMHTVARKLSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAREFIKSTPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGEPED 486
            K  A++TV R+L+D  MYI  + D+EPAG+L++AY   T  + T SPSE+EL  A ++R+ + LA+L  S DI   G    + S+L GI KPK+VP GD  R+FI +TP G + LPELLTTAL+ELCK KP  LEAVRWLG+WLI NNPN+P + EPE+
Sbjct:   11 KKAAIYTVGRQLNDGDMYIFSVYDLEPAGLLIRAYCASTSSELTTSPSESELYAASITRAEKHLAQLCDSYDIVTKGGTPLLESNLTGINKPKLVPQGDGVRQFITATPAGSETLPELLTTALTELCKQKPAKLEAVRWLGQWLIDNNPNQPQVAEPEE 169
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A836CDF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF1_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.040e-51
Identity = 86/151 (56.95%), Postives = 110/151 (72.85%), Query Frame = 1 
Query:   43 LSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAREFIKSTPVGGQMLPELLTTALSELCKVKPQG---LEAVRWLGEWLIANNPNKPSIGEPED 486
            L D  MY +GI DMEPAGV+++A N  T   Y L P+E+ELA A L R+  DLA+LA SVD+  +G  TFI+S LPGI KPKI+P G+ A++F+    +    L +LLTT LSELCKVKPQG   ++AVRWLGEWL+ANNPN+P++ EPED
Sbjct:    1 LQDGDMYTIGIFDMEPAGVVIRALNNATAKYYALGPTESELAAAKLGRNESDLARLAESVDLLEVGGTTFIYSSLPGICKPKIIPTGETAKDFMNGLTLRDGSLVQLLTTGLSELCKVKPQGPGGIDAVRWLGEWLLANNPNQPAVEEPED 151
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A8J2WSR2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSR2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.480e-40
Identity = 71/159 (44.65%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:   10 KATAMHTVARKLSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAREFIKSTPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGEPED 486
            +  A++  AR L D  +YI+ + D  P+G+LV+AY +   V+Y +  +E+EL  A LSRS++ L+KLA S+ +  +  +  + S + GI KPK++P+GD  R+FI  T  G   L + L+ ALSELCK KP GL+AVRWLG+W++ NNPN+P++ EP D
Sbjct:    4 RKVAIYNCARALDDNDIYILQMFDTSPSGLLVKAYRQTESVEYFMPITESELDNAALSRSQQALSKLAESLSLVELSGKLVLMSSITGIIKPKVLPSGDGVRQFIGRTKAGRDTLSDFLSEALSELCKEKPVGLDAVRWLGQWILKNNPNQPTVEEPTD 162
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: D8LSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.470e-34
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:  163 LATAGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAREFIKSTPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGEPEDE 489
            + +AGLSRSR DL +LA S+ I+ +  Q FIHS   GI KPKIVP GD AR F++    G   L ELLTT  SELCKVKP+GL+AVRWL EWL+ NNPNKP +   +DE
Sbjct:    1 MGSAGLSRSRGDLERLAESIGIYHVHGQIFIHSTFDGIAKPKIVPTGDQARAFVEGMRAGTGSLEELLTTPFSELCKVKPEGLDAVRWLAEWLLENNPNKPKVAHADDE 109
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A7S3YI87_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI87_HETAK)

HSP 1 Score: 109 bits (273), Expect = 7.760e-26
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   16 TAMHTVARKLSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAR 315
            T+++   R+L D  +Y++ ++D+EPAGVLV+AYN+ T  ++ LSPSE EL+ AGLSR +EDL KL  S+D+  I  QTF+ S LPG+   K+VP GD A+
Sbjct:    4 TSLYVQGRRLKDGSLYVISVVDLEPAGVLVKAYNQITSAEFFLSPSEDELSEAGLSRKQEDLQKLVESIDLKEISGQTFLSSSLPGVRDAKVVPRGDQAQ 103
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A482SG18_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG18_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 4.870e-11
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  328 STPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGEPE 483
            S P   Q L +LL T L ELCK KP GL+AV+WLG WL+ANNPNKP + + E
Sbjct:    5 SLPNASQNLHDLLVTGLVELCKEKPVGLDAVKWLGNWLLANNPNKPCVLDDE 56
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A2D4C4C0_PYTIN (Dynein light chain-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4C0_PYTIN)

HSP 1 Score: 71.2 bits (173), Expect = 4.770e-10
Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = 1 
Query:   25 HTVARKLSDEGMYIVGIIDMEPAGVLVQAYNE---ETCVQYTLSPSETELATAGLSRSREDLAKLALSVDIF-----------RIGQQTF----IHSDLPGIEKPKIVPAGDDAREFIKSTPVG------------GQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSI 471
            H  AR++     + V + D++  G+ V  Y      T   ++   S  EL  AG++R+ +    L  S+++            R GQ       + S LPGI  P  + +   A  ++   PVG             ++L +++   L+ELC+ KP GL AV+WLGEWL+ NNP +P +
Sbjct:    9 HYKARRVFLGDEFEVRLFDVDDVGIAVIVYPAGAATTSQTFSRVFSRVELQDAGITRTLDGYVALTDSLELVEDAYFTGADAARAGQSELSAYQLSSSLPGIRFPDPIVSQQAATAYLTRCPVGLTTWNASRTPADEKILLDVVARGLTELCRHKPTGLAAVKWLGEWLLQNNPTQPHV 187
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A5D6Y9V0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9V0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.500e-10
Identity = 46/170 (27.06%), Postives = 79/170 (46.47%), Query Frame = 1 
Query:   67 VGIIDMEPAGVLVQAYNEETC------VQYTLSPSETELATAGLSRSREDLAKLALSVDIFRIGQQTF----------------IHSDLPGIEKPKIVPAGDDAREFIKSTPVG-----------GQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSIGE 477
            V + D++ AGV V A+           ++++   S +EL  AG++++ E    L  S+++      T                 + S LPGI+ P  + +   A  +    PVG            +ML +++   L+ELC+ KP GL+AV+WLG W + +NP +P + E
Sbjct:   23 VRLFDVDTAGVAVIAFQSAASECAAPPLKFSRVFSRSELRAAGIAKTLEGFVALVDSLELVEDAYFTAQDAAASSNGEEFAAFQLSSALPGIKCPPPIVSKQAAMAYFARAPVGPAAWSSSGELASEMLLDVVAKGLAELCRSKPAGLDAVKWLGAWFLEHNPTQPHVEE 192
[Close]
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Match: A0A6A4F579_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F579_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.790e-8
Identity = 47/177 (26.55%), Postives = 78/177 (44.07%), Query Frame = 1 
Query:   34 ARKLSDEGMYIVGIIDMEPAGVLVQAYNEET----CVQYTLSPSETELATAGLSRSREDLAKLALSVDIFR-----------IGQQTF----IHSDLPGIEKPKIVPAGDDAREFIKSTPVG------------GQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSI 471
            AR+    G + V + ++  AG+    +   T     ++++   S  EL  AG++++ E    L  S+++              GQ       + S LPGI  P  + +   A  +    PVG              +L  L+   L+ELC+ KP GLEAV+WLG W + +NP +P +
Sbjct:   12 ARRTFLGGEFEVRLFEVYDAGIAAVVFQISTEHGSPLKFSRVFSRAELDKAGIAKTLEGHVTLVDSLELIEDAYFTGNDAVGAGQNVLAAYQLSSTLPGISFPPPIVSHQAALAYFARAPVGLSTWNNSRVPEDDNLLVNLIVKGLTELCREKPPGLEAVKWLGNWFLDHNPAQPKV 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7S2XW71_9STRA5.100e-5658.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WUZ4_9STRA7.170e-5154.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CDF1_9STRA8.040e-5156.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2WSR2_9STRA2.480e-4044.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LSK2_ECTSI2.470e-3458.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YI87_HETAK7.760e-2650.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SG18_9ARCH4.870e-1159.62Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4C4C0_PYTIN4.770e-1028.49Dynein light chain-like protein n=2 Tax=Pythium in... [more]
A0A5D6Y9V0_9STRA6.500e-1027.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A4F579_9STRA4.790e-826.55Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1049163..1053432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue9.2e-30
Seed eggNOG ortholog2880.D8LSK2
EggNOG OGs2CZH7@1,2SACH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDpy-30 motif
Ec32 orthologEc-09_001940.1
Exons4
Model size1171
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20524.1prot_S-ischiensis_contig9.20524.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1049836..1053411 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817382.82274-UTR-S-ischiensis_contig9:1049162..10498351622817382.82274-UTR-S-ischiensis_contig9:1049162..1049835Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1049163..1049835 -
1695741071.770517-UTR-S-ischiensis_contig9:1049162..10498351695741071.770517-UTR-S-ischiensis_contig9:1049162..1049835Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1049163..1049835 -
1622817382.8908393-UTR-S-ischiensis_contig9:1053411..10534321622817382.8908393-UTR-S-ischiensis_contig9:1053411..1053432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1053412..1053432 -
1695741071.8319652-UTR-S-ischiensis_contig9:1053411..10534321695741071.8319652-UTR-S-ischiensis_contig9:1053411..1053432Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1053412..1053432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817382.8370397-CDS-S-ischiensis_contig9:1049835..10499111622817382.8370397-CDS-S-ischiensis_contig9:1049835..1049911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1049836..1049911 -
1695741071.7844982-CDS-S-ischiensis_contig9:1049835..10499111695741071.7844982-CDS-S-ischiensis_contig9:1049835..1049911Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1049836..1049911 -
1622817382.8514173-CDS-S-ischiensis_contig9:1050660..10507681622817382.8514173-CDS-S-ischiensis_contig9:1050660..1050768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1050661..1050768 -
1695741071.8011103-CDS-S-ischiensis_contig9:1050660..10507681695741071.8011103-CDS-S-ischiensis_contig9:1050660..1050768Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1050661..1050768 -
1622817382.8647482-CDS-S-ischiensis_contig9:1051840..10519921622817382.8647482-CDS-S-ischiensis_contig9:1051840..1051992Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1051841..1051992 -
1695741071.811257-CDS-S-ischiensis_contig9:1051840..10519921695741071.811257-CDS-S-ischiensis_contig9:1051840..1051992Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1051841..1051992 -
1622817382.8768544-CDS-S-ischiensis_contig9:1053270..10534111622817382.8768544-CDS-S-ischiensis_contig9:1053270..1053411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1053271..1053411 -
1695741071.8214893-CDS-S-ischiensis_contig9:1053270..10534111695741071.8214893-CDS-S-ischiensis_contig9:1053270..1053411Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1053271..1053411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20524.1

>prot_S-ischiensis_contig9.20524.1 ID=prot_S-ischiensis_contig9.20524.1|Name=mRNA_S-ischiensis_contig9.20524.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=159bp
MHTVARKLSDEGMYIVGIIDMEPAGVLVQAYNEETCVQYTLSPSETELAT
AGLSRSREDLAKLALSVDIFRIGQQTFIHSDLPGIEKPKIVPAGDDAREF
IKSTPVGGQMLPELLTTALSELCKVKPQGLEAVRWLGEWLIANNPNKPSI
GEPEDEEA*
back to top

mRNA from alignment at S-ischiensis_contig9:1049163..1053432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20524.1 ID=mRNA_S-ischiensis_contig9.20524.1|Name=mRNA_S-ischiensis_contig9.20524.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4270bp|location=Sequence derived from alignment at S-ischiensis_contig9:1049163..1053432- (Schizocladia ischiensis KU_0333)
TGGCAAAGGAAGGCGACGGCTATGCACACGGTGGCGCGCAAACTAAGCGA
CGAGGGCATGTACATCGTGGGGATAATTGACATGGAACCGGCTGGGGTGC
TTGTGCAAGCGTACAACGAAGAGACGTGCGTGCAATACACGCTGTCGCCG
TCGGAGACGGAGGTGAGGCACCCACCCCGGAAGCGGCTCAAAGGTGTTGT
TTTCTTGCAACAAGATAAACAAGCGAGAGGGAAAGACGAGGCGTCACTAC
ATACGCGATTTCAGAGCCCCACCCCCGCAAGCCCTTCCTTTCACTCGCCT
TCACTCACAGGGCATACAGAGCAGAAAAGAAAGAAAAACAGGGAAGGGAC
AGGGCGGGAAAGAATAGCCGTGGAGGAGGGCTCTCTTGTGCCACAAAGTG
TCGGTTCTTCCGGGGGGGATCCCCAAAGACTCACAACGCTACTGTCGCTC
ACATCTGGCCCGTACCTCCACCGCGCAGTTGGTCCTCGAGGCAAATACAT
CGGGGCCGCGAAAGGAATGTGTAGCGACTATTCATGTCGCTCCCGAGCGT
GTGTGCCTGTTGCCTACGTCTAGTTGTGGGATCAATGGCCGGCTTCGGAT
ACTCTTTTGTGCAGCGTGCACAAGTGGCAAGACTTAAAGTGCGTTAGAAA
TGCTACTGCCAAGCTGGTCTGGTCCACCTCTCCGTTCCTGGAGCCACTAT
CGCAACTCTCTCACCATGGAGGCAATGTTCTCCCGGCGTACTATCACAAC
TCTTCCAAACAGGCACTGGGCAACACTCTCCCGAGAAACGGCTTCGGGGG
GTGAAACTGATAGTTTTCGAGGTATTGACGTGGTCAATGGTCTCGAGATT
ACAGCAAGCACAACGTGAGAACATATATTGACACTCGATCCTACCCTAAA
CGTCATACTTTTTGGGTCCATGACATGCTTTTTCGGGGTGTGGCAGGGGC
TAAGAGCTCCAAACAGGTTTCGTTCAGCACGGCAGCACTGTTGCAAACAG
CCCCCCCCGGTCAAACAAAGGGATGTCTTGGGCCAAGGGCCCCATTACGA
CGAAATCTGTTCCTTTTCCGTGACCCTTCGAGCACTACATGCGCCACGCT
GCAGATTCAACTTGAGAAGTGCGTTGTAGGCGACAGAAAGGCGAGAGGCG
CCACGAAACGCATTCACTAGCACACTCATCCCGGAGCACCCTGTGCAATT
CCGATGAAACCGGAACACTGCTCAATGGACGCACAGCACAGAACTCCCAC
AAATGTGGGACTGCAGCACTTTCTTGATGCAGTGTGGGAGATTTGTGACG
TGCCCCAAACGCTCTCCTCGACGTGCCCAAAACGAGAACAGTCAATCTCA
CACACGTGCGATTGTGCCTCGTTACAAGTTATATGAATCACGCGCCCAAA
ACGCTCTCCTCGTCCCTGCCCGCGCACCCGGGGGGGGCAGCTGGCAACAG
CTGGGCTGTCACGCTCGCGCGAGGACCTGGCAAAGCTGGCGTTAAGCGTG
GACATCTTCAGGATCGGGCAGCAGACCTTCATTCACTCCGACCTTCCGGG
CATCGAAAAGCCCAAGATTGTCCCCGCGGGCGACGACGCCAGGTGAGCGT
CTGGTGATTCATATAAATTGTAACGAGGTACAACCGCGCTTGTGTGAGAT
TCTACTAGTAGTTGTCCCGTTTAAAAATTGAGTGTTCTTATATTAGTGAT
TATCACATCAAGGAACCAAGAGCAAGGCATGTGTGTTTGCATGTGTGTGC
AGGGTTGGCACCTAGAGAGGTTAGGGCCTAATTATCCTTTATTTTAGGTC
TAACTAGCCCTAATTACCCCTAATTACAATAAGGACCTACTCGTAAAAGG
GCACCACTTAGGGTTTAAGTGCCAACCCTGCGTGTGTGTGTGGTGTGTGT
CTGTTTGTCTGTCTGTCTGCCTGGCTGTGCGTGGCATTGTACTTGGAAGC
ACGAGTACGGCACATTACACGTGAGTATATATACGTATATATGGCAGGTG
AGACAAGTACCGCTTCGCAGGCCGAGTCAGGCATTGACTAAGTCTAACAG
AGCAAGAGCACTGGCGTTCCGAAACGAACTACTGCGACGTTCTCGGAAGG
GCCTGGAGTACTTCGAAGTACCTGCTACAGTACAAGTACACAGCTGTATG
CGCTCACAGTGGGGCAGGCGTGCGGGAGGCTGGGGCCCAACACCGAGTGA
AGTGCGTACCGGAGAGGGCTTAAGAAGAGCAGGCAGAGCACATGCCGATG
ATGGATCCATCTACTGTACATACTTCTGAGTACTTCGAAGTACTTCGTAC
TCCTGGAGAACATGACCTGTTTTCACCGGCCGATACATCTAGGCGACCAT
CTGTGTACCCACATACTTGAAGTACTTCGGCGCAGCATAGTGTATGACCC
ACACTACACCGACGCCCTACAAGCGCTTATAGAGAACCGACACGCGATCA
TCGATTCTATCCGTTTCGATATTGACACGTCAGACGCCGTCTGCATGCAT
GCACGGGTTGCCCCCGCCTCGCGCAGGGTTGGCACTTAGCCCCTAACCTA
AGTGGTGCCCTTTTAGGCCCCTAATTAGAGGTAATTAGGGGTAACTAGAC
AAAATGAAGACTGATTAGGCCCTAGTCAACCTCCAAGTGCCAACCCTGGC
CACGTGCGCGGCAGGGAGTTCATCAAGTCCACCCCCGTGGGCGGGCAGAT
GCTGCCCGAGCTGCTGACCACGGCACTCTCGGAGCTCTGCAAGGTCAAGC
CGCAGGGCCTCGAGGCCGTGAGGTGTGTGACGATTCATATAAATTGTCCT
CCGCCCAGTTTCTTTTTTATGTCTTTTTCTTCTTGACCTGCGAAGGAAGA
AAGGGCTTCGTTGAGTCCCGTTTCGGGACGATCCTTTTGGCATGCGGCCT
GGAACTCGCCATATATCTACCACTCAAAAAAATTGTGACGAGGTACAACC
GCACGTGTGTGAGATTCTACTAGTAGTTGTCCCATTTAACAATTGAGCGT
TCTTATATTAGTGACTATCACATCAAGGAACTAAGAACAAGGAGGGGGGG
GGGGGGAAGACAAAAGGCCTTTTGGTCAGGACCCCGGGGACGCTCATCCC
CTCCAGGGCCCTCCTGCGCCCGCACGTTGCCTCCCCCAAGTGGTGATTCA
CATACATTGTACTTCGAAATCAAGGTACAATCGCACGTGTGTCCCATTTA
AGAGTGGTGCTGGCAGTCCCACCCCCTCCCTCTACCGCACAACGCTCCCC
CTCTCTGCCCTCCCCAATCCCGGACCTTGTTCCCCTCCCTTCCCTTTCCC
TTTCCCTCCCTGCCCTCCCCGTTCCTCCAAATCACACCCCTCTTCTTCCC
TGCCCCGCCTGCCCCCTCCCCTCCCAACCGCCCCTCGCCTCCGCTCCCCA
CCACCCTCTCTCCTCCCCTCCCCTCCCCCCCTTTCCCCTTCCATCTGTTC
CTACCCCCATGCCCCCGGCCCCCTTCCCGCCCCCCGGCGCACACACGTGC
CTGCCCTTGCCTCCCGCTCAGGTGGCTAGGGGAGTGGCTCATCGCCAACA
ACCCCAACAAGCCCAGCATAGGGGAGCCGGAGGACGAGGAGGCGTGAGAA
AAAAAAAGCCTACCAAGGGCATGCCCACAGCTGTAGCAGCCCACAAAACA
CCATGTCTAGGTGTGCCGCAGCTGCGCTCGGCCCATGGAAACGCCTGCCA
GGGGTCGAGGAGGCGTGAGAACGACCAACGCCAGCCAAGGACATGCCCAC
AGCCGTAACAGCCCACAAAACGCCATGCCCAGGTGTGCCGCAGCTGCGCT
CGGCCCATGGAAACGCCTGCCAGGGGTGCGTCTCCGCGGCTTGGTAGAGC
CCCTGGAGGGGAAAACACCAGCCGAGTGGTGCGGGCACGGCTGCAGCTCG
CGGAAAGAAACCACTGCCACAGCAGCTCCGAACCGTCACTTTTCGCCTCC
GAAACCAGCCCTATGGAACGGCACAGCCCGGTGCCTCCGGGGGCGGGGGC
CCGGGCTTGCCCCAGCAGCTCTTGTAGGTGTGGGAAGGACTCGGTGGGGG
GCACAACACGTACGCCCCTGCCCTGGCCCCCCCCCCACTGCACCGGAGGA
GGCTGGTGGGCAGGCGGAGGCACTCAATCTCATTAACGCCGTAGGTTAAC
ATGCGGCGGGCGACCCGGGCCGCCTGCGCGGTGTGGTGGCGGCCTGGCCG
ACCGAGCTGCAGCGCTCTAAGTAACTCTCACGAGACGCACTCCATGTATA
TGTACTCACGTGGTGCTCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1049163..1053432-

>mRNA_S-ischiensis_contig9.20524.1 ID=mRNA_S-ischiensis_contig9.20524.1|Name=mRNA_S-ischiensis_contig9.20524.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=954bp|location=Sequence derived from alignment at S-ischiensis_contig9:1049163..1053432- (Schizocladia ischiensis KU_0333)
ATGCACACGGTGGCGCGCAAACTAAGCGACGAGGGCATGTACATCGTGGG
GATAATTGACATGGAACCGGCTGGGGTGCTTGTGCAAGCGTACAACGAAG
AGACGTGCGTGCAATACACGCTGTCGCCGTCGGAGACGGAGATGCACACG
GTGGCGCGCAAACTAAGCGACGAGGGCATGTACATCGTGGGGATAATTGA
CATGGAACCGGCTGGGGTGCTTGTGCAAGCGTACAACGAAGAGACGTGCG
TGCAATACACGCTGTCGCCGTCGGAGACGGAGCTGGCAACAGCTGGGCTG
TCACGCTCGCGCGAGGACCTGGCAAAGCTGGCGTTAAGCGTGGACATCTT
CAGGATCGGGCAGCAGACCTTCATTCACTCCGACCTTCCGGGCATCGAAA
AGCCCAAGATTGTCCCCGCGGGCGACGACGCCAGCTGGCAACAGCTGGGC
TGTCACGCTCGCGCGAGGACCTGGCAAAGCTGGCGTTAAGCGTGGACATC
TTCAGGATCGGGCAGCAGACCTTCATTCACTCCGACCTTCCGGGCATCGA
AAAGCCCAAGATTGTCCCCGCGGGCGACGACGCCAGGGAGTTCATCAAGT
CCACCCCCGTGGGCGGGCAGATGCTGCCCGAGCTGCTGACCACGGCACTC
TCGGAGCTCTGCAAGGTCAAGCCGCAGGGCCTCGAGGCCGTGAGGGAGTT
CATCAAGTCCACCCCCGTGGGCGGGCAGATGCTGCCCGAGCTGCTGACCA
CGGCACTCTCGGAGCTCTGCAAGGTCAAGCCGCAGGGCCTCGAGGCCGTG
AGGTGGCTAGGGGAGTGGCTCATCGCCAACAACCCCAACAAGCCCAGCAT
AGGGGAGCCGGAGGACGAGGAGGCGTGAGTGGCTAGGGGAGTGGCTCATC
GCCAACAACCCCAACAAGCCCAGCATAGGGGAGCCGGAGGACGAGGAGGC
GTGA
back to top