mRNA_S-ischiensis_contig9.20522.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20522.1
Unique NamemRNA_S-ischiensis_contig9.20522.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1043398..1044128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.5288684-CDS-S-ischiensis_contig9:1043397..10437781622817371.5288684-CDS-S-ischiensis_contig9:1043397..1043778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1043398..1043778 +
1695741063.3318095-CDS-S-ischiensis_contig9:1043397..10437781695741063.3318095-CDS-S-ischiensis_contig9:1043397..1043778Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1043398..1043778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.5405803-UTR-S-ischiensis_contig9:1043778..10441281622817371.5405803-UTR-S-ischiensis_contig9:1043778..1044128Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1043779..1044128 +
1695741063.3432076-UTR-S-ischiensis_contig9:1043778..10441281695741063.3432076-UTR-S-ischiensis_contig9:1043778..1044128Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1043779..1044128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20522.1prot_S-ischiensis_contig9.20522.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1043398..1043778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20522.1

>prot_S-ischiensis_contig9.20522.1 ID=prot_S-ischiensis_contig9.20522.1|Name=mRNA_S-ischiensis_contig9.20522.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=127bp
RSGGGGGFELLGGHCWGGGGIGRRAISPRPFGADSKCFRSGGGDSGGGRC
SRCQRHGRCAATGQPVAVAVTGNNIGVDFPPRSAGVLVYLIPAPRTLRVS
PASPPPSGGTLVRKSGSLPRTRRRRL*
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mRNA from alignment at S-ischiensis_contig9:1043398..1044128+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20522.1 ID=mRNA_S-ischiensis_contig9.20522.1|Name=mRNA_S-ischiensis_contig9.20522.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=731bp|location=Sequence derived from alignment at S-ischiensis_contig9:1043398..1044128+ (Schizocladia ischiensis KU_0333)
AGGTCAGGAGGAGGAGGAGGCTTTGAGCTACTCGGGGGGCATTGTTGGGG
CgGGGGGGGTATTGGACGAAGAGCAATTTCCCCCCGCCCTTTCGGGGCTG
ATAGCAAATGCTTCCGCAGCGGCGGCGGCGACAGCGGCGGCGGCAGGTGC
AGCCGATGCCAACGTCATGGCCGCTGCGCCGCCACGGGCCAGCCGGTGGC
GGTGGCGGTGACGGGGAACAACATCGGGGTCGACTTCCCGCCGCGGTCGG
CCGGCGTCCTCGTGTACCTCATCCCCGCCCCCCGGACCCTGCGGGTCTCG
CCGGCCTCGCCCCCCCCCTCGGGGGGGACCCTGGTACGAAAATCGGGTTC
GCTGCCCAGGACGAGGAGGAGGAGGCTTTGAGCTACTCGGGGGGCATATT
GGGGCGGCGGGGGACCGGATGAAGAGCAATGTCCCCTCTCCCTCGCGGGG
CTGATAGTAAACGCTACCGCGGCGGCGGCAGTGGTGCCGGCAGCTGCAGT
CGATGCCACGTCATGGCCTCCGCCAGCGCGGGAGAGCCGGTGGCGGTGGC
GGTGACAGTGAACAACAAGGGGTCGACTTCCCGCCGCCGTCGGCCGGCGC
CCTCGTGCACCTCGTCCCCGCCCCCCAGACATCTTCAGCCGCTTCAGGGA
CCAGGCGGTGTTGCCTGACAGGGTTATCAACTCCACGGCCCGGGTCTGCC
GGGCCCCAGCGGCGGCGGCGGGGGGAGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1043398..1044128+

>mRNA_S-ischiensis_contig9.20522.1 ID=mRNA_S-ischiensis_contig9.20522.1|Name=mRNA_S-ischiensis_contig9.20522.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=762bp|location=Sequence derived from alignment at S-ischiensis_contig9:1043398..1044128+ (Schizocladia ischiensis KU_0333)
AGGTCAGGAGGAGGAGGAGGCTTTGAGCTACTCGGGGGGCATTGTTGGGG
CgGGGGGGGTATTGGACGAAGAGCAATTTCCCCCCGCCCTTTCGGGGCTG
ATAGCAAATGCTTCCGCAGCGGCGGCGGCGACAGCGGCGGCGGCAGGTGC
AGCCGATGCCAACGTCATGGCCGCTGCGCCGCCACGGGCCAGCCGGTGGC
GGTGGCGGTGACGGGGAACAACATCGGGGTCGACTTCCCGCCGCGGTCGG
CCGGCGTCCTCGTGTACCTCATCCCCGCCCCCCGGACCCTGCGGGTCTCG
CCGGCCTCGCCCCCCCCCTCGGGGGGGACCCTGGTACGAAAATCGGGTTC
GCTGCCCAGGACGAGGAGGAGGAGGCTTTGAAGGTCAGGAGGAGGAGGAG
GCTTTGAGCTACTCGGGGGGCATTGTTGGGGCgGGGGGGGTATTGGACGA
AGAGCAATTTCCCCCCGCCCTTTCGGGGCTGATAGCAAATGCTTCCGCAG
CGGCGGCGGCGACAGCGGCGGCGGCAGGTGCAGCCGATGCCAACGTCATG
GCCGCTGCGCCGCCACGGGCCAGCCGGTGGCGGTGGCGGTGACGGGGAAC
AACATCGGGGTCGACTTCCCGCCGCGGTCGGCCGGCGTCCTCGTGTACCT
CATCCCCGCCCCCCGGACCCTGCGGGTCTCGCCGGCCTCGCCCCCCCCCT
CGGGGGGGACCCTGGTACGAAAATCGGGTTCGCTGCCCAGGACGAGGAGG
AGGAGGCTTTGA
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