mRNA_S-ischiensis_contig9.20510.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20510.1
Unique NamemRNA_S-ischiensis_contig9.20510.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:925380..927126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1270
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20510.1prot_S-ischiensis_contig9.20510.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 925494..926879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.999618-UTR-S-ischiensis_contig9:925379..9254931622817364.999618-UTR-S-ischiensis_contig9:925379..925493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 925380..925493 +
1695741059.3285143-UTR-S-ischiensis_contig9:925379..9254931695741059.3285143-UTR-S-ischiensis_contig9:925379..925493Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 925380..925493 +
1622817365.0667677-UTR-S-ischiensis_contig9:926879..9271261622817365.0667677-UTR-S-ischiensis_contig9:926879..927126Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 926880..927126 +
1695741059.378425-UTR-S-ischiensis_contig9:926879..9271261695741059.378425-UTR-S-ischiensis_contig9:926879..927126Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 926880..927126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.014551-CDS-S-ischiensis_contig9:925493..9257221622817365.014551-CDS-S-ischiensis_contig9:925493..925722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 925494..925722 +
1695741059.3375807-CDS-S-ischiensis_contig9:925493..9257221695741059.3375807-CDS-S-ischiensis_contig9:925493..925722Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 925494..925722 +
1622817365.030953-CDS-S-ischiensis_contig9:925954..9260251622817365.030953-CDS-S-ischiensis_contig9:925954..926025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 925955..926025 +
1695741059.350513-CDS-S-ischiensis_contig9:925954..9260251695741059.350513-CDS-S-ischiensis_contig9:925954..926025Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 925955..926025 +
1622817365.0435414-CDS-S-ischiensis_contig9:926226..9268211622817365.0435414-CDS-S-ischiensis_contig9:926226..926821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 926227..926821 +
1695741059.3611073-CDS-S-ischiensis_contig9:926226..9268211695741059.3611073-CDS-S-ischiensis_contig9:926226..926821Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 926227..926821 +
1622817365.0545425-CDS-S-ischiensis_contig9:926865..9268791622817365.0545425-CDS-S-ischiensis_contig9:926865..926879Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 926866..926879 +
1695741059.3697786-CDS-S-ischiensis_contig9:926865..9268791695741059.3697786-CDS-S-ischiensis_contig9:926865..926879Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 926866..926879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20510.1

>prot_S-ischiensis_contig9.20510.1 ID=prot_S-ischiensis_contig9.20510.1|Name=mRNA_S-ischiensis_contig9.20510.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=303bp
MYDDHDKYFKYDPHRGGGDYLYNKKRAGDRKLDDEYDDKMGKDKDDDKMG
KDKDDDKMDYDVDYGYHPDYYPEPWHVPPHLYEADSCPTPCDAKCTANCE
ATAIAALITTDDNGVIAQCLYEGTEATAHGANDKIAKEDVALGDSPSKPE
YLRNPYNYNTYQKGKYAGMYTPQHYKDGFHRRMMEAAGKEHADYLYKRPG
VVQVVADTLNKCDINKSGTVTVFSKCESGCVATCDDPDKDVHLETDNMYN
FHATTKAPYTPKGYGGGGNDKGYGGGYYQQGWGNDKGYGGWGNDKGYGGL
GQ*
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mRNA from alignment at S-ischiensis_contig9:925380..927126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20510.1 ID=mRNA_S-ischiensis_contig9.20510.1|Name=mRNA_S-ischiensis_contig9.20510.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1747bp|location=Sequence derived from alignment at S-ischiensis_contig9:925380..927126+ (Schizocladia ischiensis KU_0333)
ACATACGAACCACTTGCGACCGACACGGAGCCGTTCACCACATGCACCGC
CCAGTGCGAGGCGACTTGTGATGCAGGGAAGCCCGGGCATCACTTGTACA
CTGACACGCCAATCATGTACGATGACCACGACAAGTACTTCAAGTACGAC
CCTCACCGTGGCGGCGGAGACTACTTGTACAACAAGAAGCGCGCCGGAGA
CCGCAAACTGGACGACGAGTACGACGACAAGATGGGCAAGGACAAGGACG
ACGACAAGATGGGCAAGGACAAGGACGACGACAAGATGGACTACGACGTG
GACTACGGCTACCACCCGGACTACTACCCCGAGCCGTGGCACGGTGAGAG
GCGCCCGGGCGACACGCGCAACCTTGCTCACTCGCCAATGACCAGTCTCG
CCTCGCAACCTCGCTACCGCAAGTGTTTGCTGCGCCACGCATGTTTTTGC
CACCCGTGTTTCCGCCACCCGTGTTTTGCGGCGTTGCTCCTTCACCGCGT
CTGAACCTCGGTCCGCCTCCCCCCCCCCCCACCATGTCCGCCCCACCTGC
GACCGCATGGCTCCCCTCCCCGCAGTGCCCCCGCACCTCTACGAGGCGGA
CTCGTGCCCTACGCCCTGCGACGCGAAGTGCACTGCGAACTGCGAGGTGG
GTGCAATAACGACCATGTGCTTGGCGTGTACCGGGATAGCACGTGCCGTC
CTGCCGTCCCGCCGCAGCGGACATCCATTGTTGTGTGCAGAAAATTGAGC
CCCCCCCGCTCACCCCTTTGCACACCCCGAATGCTATCCGCCTGCGCTGT
CTGGCCGCCCCGTCCTCCTCTGCGCCGCGCAAACCGGAAACTCTCAGGCG
ACTGCCATTGCGGCGCTCATCACCACCGACGACAACGGGGTCATCGCGCA
GTGCCTGTACGAAGGCACCGAGGCCACTGCACATGGGGCCAACGACAAAA
TCGCCAAGGAGGACGTTGCCCTTGGCGACAGCCCGTCGAAGCCGGAGTAC
CTCAGGAACCCGTACAACTACAACACCTACCAGAAGGGGAAGTACGCCGG
CATGTACACCCCGCAGCACTACAAGGACGGCTTCCACCGCCGCATGATGG
AGGCGGCGGGCAAGGAGCACGCCGACTACCTGTACAAGCGCCCAGGCGTG
GTGCAGGTGGTGGCGGACACCCTCAACAAGTGCGACATCAACAAGTCGGG
CACCGTCACCGTCTTCTCCAAGTGCGAGTCTGGCTGCGTGGCCACGTGCG
ACGACCCCGACAAGGACGTGCACCTGGAGACGGACAACATGTACAACTTC
CACGCCACCACCAAGGCACCCTACACACCCAAGGGGTACGGGGGCGGGGG
CAATGACAAGGGCTACGGCGGCGGCTACTACCAGCAGGGCTGGGGCAATG
ACAAGGGCTACGGCGGCTGGGGCAATGACAAGGGCTACGGCGGCTGGGGC
AATGACAAGGGCTACGGCGGCGGCGACTACCAGCAGGGCTGGGGCAATGA
CAAGGGCTACGGCGGCGGCGACTACCAGCAGGGCTGGGGCAATGACAAGG
GCTACGGCGGCGGCTGGTAAAGCGGGCGGCAGCGCTTTTCCCGCCCTTGG
CGCCGGCGGCGTAGCATGGCGTAGCACCCCTACCCGTGTCTCGCTGTAGC
CGGCGCCGCAAGGATCGCACATGGGGATGGGCCAGGCCCACGCCTGCACC
ACAGGCGCTGCTTGAGCCCACAACACACAACGGTGGCGAGGGGAAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:925380..927126+

>mRNA_S-ischiensis_contig9.20510.1 ID=mRNA_S-ischiensis_contig9.20510.1|Name=mRNA_S-ischiensis_contig9.20510.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1818bp|location=Sequence derived from alignment at S-ischiensis_contig9:925380..927126+ (Schizocladia ischiensis KU_0333)
ATGTACGATGACCACGACAAGTACTTCAAGTACGACCCTCACCGTGGCGG
CGGAGACTACTTGTACAACAAGAAGCGCGCCGGAGACCGCAAACTGGACG
ACGAGTACGACGACAAGATGGGCAAGGACAAGGACGACGACAAGATGGGC
AAGGACAAGGACGACGACAAGATGGACTACGACGTGGACTACGGCTACCA
CCCGGACTACTACCCCGAGCCGTGGCACGATGTACGATGACCACGACAAG
TACTTCAAGTACGACCCTCACCGTGGCGGCGGAGACTACTTGTACAACAA
GAAGCGCGCCGGAGACCGCAAACTGGACGACGAGTACGACGACAAGATGG
GCAAGGACAAGGACGACGACAAGATGGGCAAGGACAAGGACGACGACAAG
ATGGACTACGACGTGGACTACGGCTACCACCCGGACTACTACCCCGAGCC
GTGGCACGTGCCCCCGCACCTCTACGAGGCGGACTCGTGCCCTACGCCCT
GCGACGCGAAGTGCACTGCGAACTGCGAGTGCCCCCGCACCTCTACGAGG
CGGACTCGTGCCCTACGCCCTGCGACGCGAAGTGCACTGCGAACTGCGAG
GCGACTGCCATTGCGGCGCTCATCACCACCGACGACAACGGGGTCATCGC
GCAGTGCCTGTACGAAGGCACCGAGGCCACTGCACATGGGGCCAACGACA
AAATCGCCAAGGAGGACGTTGCCCTTGGCGACAGCCCGTCGAAGCCGGAG
TACCTCAGGAACCCGTACAACTACAACACCTACCAGAAGGGGAAGTACGC
CGGCATGTACACCCCGCAGCACTACAAGGACGGCTTCCACCGCCGCATGA
TGGAGGCGGCGGGCAAGGAGCACGCCGACTACCTGTACAAGCGCCCAGGC
GTGGTGCAGGTGGTGGCGGACACCCTCAACAAGTGCGACATCAACAAGTC
GGGCACCGTCACCGTCTTCTCCAAGTGCGAGTCTGGCTGCGTGGCCACGT
GCGACGACCCCGACAAGGACGTGCACCTGGAGACGGACAACATGTACAAC
TTCCACGCCACCACCAAGGCACCCTACACACCCAAGGGGTACGGGGGCGG
GGGCAATGACAAGGGCTACGGCGGCGGCTACTACCAGCAGGGCTGGGGCA
ATGACAAGGGCTACGGCGGCTGGGGCAATGACAAGGGCTACGGCGGCGAC
TGCCATTGCGGCGCTCATCACCACCGACGACAACGGGGTCATCGCGCAGT
GCCTGTACGAAGGCACCGAGGCCACTGCACATGGGGCCAACGACAAAATC
GCCAAGGAGGACGTTGCCCTTGGCGACAGCCCGTCGAAGCCGGAGTACCT
CAGGAACCCGTACAACTACAACACCTACCAGAAGGGGAAGTACGCCGGCA
TGTACACCCCGCAGCACTACAAGGACGGCTTCCACCGCCGCATGATGGAG
GCGGCGGGCAAGGAGCACGCCGACTACCTGTACAAGCGCCCAGGCGTGGT
GCAGGTGGTGGCGGACACCCTCAACAAGTGCGACATCAACAAGTCGGGCA
CCGTCACCGTCTTCTCCAAGTGCGAGTCTGGCTGCGTGGCCACGTGCGAC
GACCCCGACAAGGACGTGCACCTGGAGACGGACAACATGTACAACTTCCA
CGCCACCACCAAGGCACCCTACACACCCAAGGGGTACGGGGGCGGGGGCA
ATGACAAGGGCTACGGCGGCGGCTACTACCAGCAGGGCTGGGGCAATGAC
AAGGGCTACGGCGGCTGGGGCAATGACAAGGGCTACGGCGGGCTGGGGCA
ATGAGGCTGGGGCAATGA
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