mRNA_S-ischiensis_contig9.20494.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20494.1
Unique NamemRNA_S-ischiensis_contig9.20494.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 3.030e-24
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            LLELHLDDQTDSK+LLGAHACT+VPGEFAWRPGALTRAAAAG WV IEDLDRAP
Sbjct:  464 LLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTRAAAAGTWVLIEDLDRAP 517
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.430e-23
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            LLELHLDDQTDSK+LLGAHACT+VPGEFAWRPGALT AAAAG WV IEDLDRAP
Sbjct:  511 LLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALTHAAAAGTWVLIEDLDRAP 564
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A0W8D5B3_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5B3_PHYNI)

HSP 1 Score: 93.6 bits (231), Expect = 1.170e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEFAW+PGALT A  AGRWV IED+DRAP
Sbjct:  388 MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAP 441
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 93.6 bits (231), Expect = 1.240e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEFAW+PGALT A  AGRWV IED+DRAP
Sbjct:  388 MVELHLDDQIDSKTLLGSYVCTDVPGEFAWQPGALTTAVLAGRWVVIEDIDRAP 441
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A662YAW0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAW0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.020e-19
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            L+ELHLDDQ DSKTLLG++ CT++PGEF W+PGALT A  AGRWV +ED+DRAP
Sbjct:  404 LVELHLDDQIDSKTLLGSYVCTDIPGEFTWQPGALTTAVLAGRWVVVEDIDRAP 457
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A329RXK7_9STRA (Midasin n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RXK7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.310e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEF W+PGALT A  AGRWV IED+DRAP
Sbjct:  394 MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAP 447
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: H3GJC4_PHYRM (VWFA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJC4_PHYRM)

HSP 1 Score: 92.0 bits (227), Expect = 4.310e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEF W+PGALT A  AGRWV IED+DRAP
Sbjct:  367 MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAP 420
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: G4ZMS6_PHYSP (VWFA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZMS6_PHYSP)

HSP 1 Score: 92.0 bits (227), Expect = 4.310e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEF W+PGALT A  AGRWV IED+DRAP
Sbjct:  383 MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAP 436
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A6A4G7L0_9STRA (Midasin n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G7L0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.310e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEF W+PGALT A  AGRWV IED+DRAP
Sbjct:  439 MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAP 492
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BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Match: A0A6A3UTY1_9STRA (Midasin n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UTY1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.310e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -2 
Query:    1 LLELHLDDQTDSKTLLGAHACTEVPGEFAWRPGALTRAAAAGRWVAIEDLDRAP 162
            ++ELHLDDQ DSKTLLG++ CT+VPGEF W+PGALT A  AGRWV IED+DRAP
Sbjct:  439 MVELHLDDQIDSKTLLGSYVCTDVPGEFTWQPGALTTAVLAGRWVVIEDIDRAP 492
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL29_ECTSI3.030e-2492.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE1.430e-2390.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0W8D5B3_PHYNI1.170e-1975.93Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2Q5P2_PHYPN1.240e-1975.93VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
A0A662YAW0_9STRA4.020e-1972.22Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A329RXK7_9STRA4.310e-1974.07Midasin n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3... [more]
H3GJC4_PHYRM4.310e-1974.07VWFA domain-containing protein n=1 Tax=Phytophthor... [more]
G4ZMS6_PHYSP4.310e-1974.07VWFA domain-containing protein n=8 Tax=Phytophthor... [more]
A0A6A4G7L0_9STRA4.310e-1974.07Midasin n=3 Tax=Phytophthora rubi TaxID=129364 Rep... [more]
A0A6A3UTY1_9STRA4.310e-1974.07Midasin n=6 Tax=Phytophthora fragariae TaxID=53985... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:766919..767306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size389
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.2724879-UTR-S-ischiensis_contig9:766918..7669401622817371.2724879-UTR-S-ischiensis_contig9:766918..766940Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 766919..766940 +
1695741063.2234638-UTR-S-ischiensis_contig9:766918..7669401695741063.2234638-UTR-S-ischiensis_contig9:766918..766940Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 766919..766940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.2842796-CDS-S-ischiensis_contig9:766940..7673061622817371.2842796-CDS-S-ischiensis_contig9:766940..767306Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 766941..767306 +
1695741063.236634-CDS-S-ischiensis_contig9:766940..7673061695741063.236634-CDS-S-ischiensis_contig9:766940..767306Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 766941..767306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20494.1prot_S-ischiensis_contig9.20494.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 766941..767306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20494.1

>prot_S-ischiensis_contig9.20494.1 ID=prot_S-ischiensis_contig9.20494.1|Name=mRNA_S-ischiensis_contig9.20494.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MATHRPAAAARVRAPGRQANSPGTSVQACAPRSVLESVWSSRCSSSSQEE
EEEEGGGEAEEKAGASSAADDGRDDDDDDNNDGGDEDAVPGMAFAGEGCG
GGGGGAAGGGGAAAAAAPPGSG
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mRNA from alignment at S-ischiensis_contig9:766919..767306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20494.1 ID=mRNA_S-ischiensis_contig9.20494.1|Name=mRNA_S-ischiensis_contig9.20494.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=388bp|location=Sequence derived from alignment at S-ischiensis_contig9:766919..767306+ (Schizocladia ischiensis KU_0333)
GGGGGCTCGGTCCAGGTCCTCGATGGCCACCCACCGGCCCGCCGCTGCCG
CACGGGTCAGGGCCCCCGGCCGCCAGGCAAACTCCCCCGGGACCTCCGTG
CAGGCGTGCGCGCCGAGGAGCGTCTTGGAGTCTGTCTGGTCGTCTAGGTG
CAGTTCCAGCAGCCAGGAGGAGGAGGAGGAGGAGGGGGGGGGAGAAGCAG
AAGAAAAAGCAGGCGCCTCCTCCGCAGCAGATGATGGACGCGACGACGAC
GACGATGACAATAACGACGGAGGCGATGAGGACGCAGTCCCAGGGATGGC
GTTCGCCGGAGAAGGATGTGGTGGTGGTGGTGGTGGAGCGGCGGGAGGGG
GGGGTGCCGCCGCCGCCGCAGCCCCGCCAGGGAGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:766919..767306+

>mRNA_S-ischiensis_contig9.20494.1 ID=mRNA_S-ischiensis_contig9.20494.1|Name=mRNA_S-ischiensis_contig9.20494.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig9:766919..767306+ (Schizocladia ischiensis KU_0333)
ATGGCCACCCACCGGCCCGCCGCTGCCGCACGGGTCAGGGCCCCCGGCCG
CCAGGCAAACTCCCCCGGGACCTCCGTGCAGGCGTGCGCGCCGAGGAGCG
TCTTGGAGTCTGTCTGGTCGTCTAGGTGCAGTTCCAGCAGCCAGGAGGAG
GAGGAGGAGGAGGGGGGGGGAGAAGCAGAAGAAAAAGCAGGCGCCTCCTC
CGCAGCAGATGATGGACGCGACGACGACGACGATGACAATAACGACGGAG
GCGATGAGGACGCAGTCCCAGGGATGGCGTTCGCCGGAGAAGGATGTGGT
GGTGGTGGTGGTGGAGCGGCGGGAGGGGGGGGTGCCGCCGCCGCCGCAGC
CCCGCCAGGGAGTGGCATGGCCACCCACCGGCCCGCCGCTGCCGCACGGG
TCAGGGCCCCCGGCCGCCAGGCAAACTCCCCCGGGACCTCCGTGCAGGCG
TGCGCGCCGAGGAGCGTCTTGGAGTCTGTCTGGTCGTCTAGGTGCAGTTC
CAGCAGCCAGGAGGAGGAGGAGGAGGAGGGGGGGGGAGAAGCAGAAGAAA
AAGCAGGCGCCTCCTCCGCAGCAGATGATGGACGCGACGACGACGACGAT
GACAATAACGACGGAGGCGATGAGGACGCAGTCCCAGGGATGGCGTTCGC
CGGAGAAGGATGTGGTGGTGGTGGTGGTGGAGCGGCGGGAGGGGGGGGTG
CCGCCGCCGCCGCAGCCCCGCCAGGGAGTGGC
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