mRNA_S-ischiensis_contig9.20493.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI) HSP 1 Score: 227 bits (578), Expect = 2.060e-62 Identity = 192/486 (39.51%), Postives = 236/486 (48.56%), Query Frame = 1
Query: 1 VGTASAQRNLSALSLAMTTGRPILLYGPPGCGKS------------------------SRXXXXXXXXXXXXXXXXXGCWNCT*TTRQTPRRSSARTPARRSRGSLPG--------GRGP*PVRQRRAGGWPSRTWTEPPSRCCRLWAHCWRVGGWSCRGGAGG----GSSSYGRLRASACLEQ*PRRGRGPGRWRWGGRRTAVRCGSRSMWSLSPPTRSSK-----WPPHAIHTSPGLLRNASCAHSRPRQLPGAGGGG----SCSGREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEER----ELW-CTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQ 1308
V TASA+RNLS+LSLA+T RPILLYGP G GKS S G CT + R A T R + G R P V R T P + A +RV G GAGG G++ +G L +E S+S R +K PP A+ + A +S G GG G S +GREPGVRD LKLC RV G+F EV+ EE+++ + W C+E QAL V+ E+LDVFAGH++ AE AG WN+ P AV++A + RPE Q G YL IGRVTL ++ + + ++ SSFAPTSHALRLME LAA +A EPVL+VGETGCGKTALVQRLAEG G+ LVVQNLSLQTDGADLLGG+RP+ELRQLA+
Sbjct: 403 VPTASARRNLSSLSLALTVDRPILLYGPAGSGKSLLAREAARLISNSGDGVDPEPGASSTPLLELHLDDQTDSKSLLGAHACTDVPGEFAWRPGALT-----RAAAAGTWVLIEDLDRAPFEVLAAIGPLLEGRPLTLPGRTRPLIAAPGFRVFGTVTTVGAGGVVLGGAADFGALWTHVPVEP---------------------------LSVSETLRVAKARYPGLPPPALKRMLSTMVAAKSGNS------GGGGFGLASRSAAGREPGVRDFLKLCTRVDTLGVFDRQNEDEVSMSNECGPQENDQEEDDDHLNDEDGWFCSEAQALPVVVESLDVFAGHLTTKEARAHAAEVVAGLWNVLPSRAVEIATTSRPEFVQAGDYLKIGRVTLPKLPQAKGGVTASSSFAPTSHALRLMETLAASAQACEPVLLVGETGCGKTALVQRLAEGTGRDLVVQNLSLQTDGADLLGGFRPVELRQLAE 850
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE) HSP 1 Score: 220 bits (560), Expect = 8.710e-60 Identity = 130/235 (55.32%), Postives = 156/235 (66.38%), Query Frame = 1
Query: 640 GAGGGGSCS----GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEEREL--------WCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQ 1308
G GG GS S GREPGVRD LKLC RV G+F AEV+ EE+ E + +C+E QAL V+ E+LDVFAGH++ AE AG WN+ AV++A + RPE + YL IGRVTL ++ + + ++ SSFAPTSHALRLME LAA +A EPVL+VGETGCGKTALVQRLAEG G+ LVVQNLSLQTDGADLLGGYRP+ELRQLA+
Sbjct: 666 GCGGFGSASRSAAGREPGVRDFLKLCARVDTTGVFDRQDKAEVSMSNECGPQGNDVEEDGEDDYHLNDEDGWFCSEAQALPVVVESLDVFAGHLTTKEARAHAAEVIAGLWNVLASKAVEIATTTRPEFVEAQDYLKIGRVTLPKVPQAKCGGTASSSFAPTSHALRLMETLAASAQACEPVLLVGETGCGKTALVQRLAEGTGRNLVVQNLSLQTDGADLLGGYRPVELRQLAE 900
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA) HSP 1 Score: 187 bits (474), Expect = 9.740e-48 Identity = 111/215 (51.63%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 739 GQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLSS-----FAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
G A +GG GG R+ +AL+ L EALDVFA ++ LR A A A WN+R ETA+ LA +RRP ++AIGRVTL R FAPTS ALRLMER+AAC EP L+VGETGCGKT LVQ+LA GQTLVVQNLSLQTD ADLLGGYRP+EL QLA+EL+ +LFP++FS R+NA
Sbjct: 207 GGVAARGSGGALXXXXXGGRAPSVRDFLKLLRRALAALAEALDVFAACLASPDALRSAAGALAALWNVRAETALALATTRRPALSLSERHVAIGRVTLERREGXXXXXXXXXXXGGRLFAPTSQALRLMERVAACAAMREPALLVGETGCGKTTLVQQLARALGQTLVVQNLSLQTDSADLLGGYRPVELWQLAKELMTQLFDLFPTVFSVRQNA 421
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A7S3DLW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DLW9_9STRA) HSP 1 Score: 139 bits (350), Expect = 5.630e-35 Identity = 83/221 (37.56%), Postives = 122/221 (55.20%), Query Frame = 1
Query: 667 GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGE-WNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDF 1326
GR P VRD+ K+ R+A++ +F E + + TE Q L E +DVFA D R+ FA W++ + AV+ SR P Q G++ IGRV L + + S ++A T++ +R+ME + C+R +EPVL+VGETG GKT+++Q+LA +G LVVQNLSLQTD D+LGG+RPLE+ +A+ + DF
Sbjct: 30 GRPPSVRDLFKVMSRIANSVVF------------------------ERQTGYATENQRTICLAETMDVFAAACPDVKSRRIFVRDFAAPAWSLTVDAAVQSLESRIPAIDQHDGFVHIGRVGLPTSQDEVQIDSG--TYACTAYTIRMMESIGVCIRENEPVLLVGETGGGKTSILQQLARISGHELVVQNLSLQTDSTDILGGFRPLEIHHVARGVYQDF 224
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A1E7FX93_9STRA (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX93_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.050e-34 Identity = 89/238 (37.39%), Postives = 125/238 (52.52%), Query Frame = 1
Query: 667 GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAG-----EWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKN 1365
GR P VRD+ KL R+++ F E+ L+ TE Q + E++D+F + V E F G W I + A + R+P + IGR + ++FA TSHALRLME +A CVR +EP+L+VGETGCGKT ++Q+LA +TL+VQNLSLQTD DLLGGYRPLE++ +A+ + DF++ F S FS ++N
Sbjct: 235 GRIPSVRDLFKLLSRISNGMCF------------------------EKNTLYITEAQRTLCMAESVDIFMASCPNQQ----VREEFIGLVAAPVWGITGDLAFAYIMVRKPTVLMGTNFFEIGRAKFDITKSIGYSEEPSTTFAQTSHALRLMESIAVCVRENEPILLVGETGCGKTTVIQQLAASCERTLIVQNLSLQTDSTDLLGGYRPLEIQNVARNVYKDFVDTFVSSFSRKQN 444
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A7S1YT04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YT04_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.890e-34 Identity = 95/240 (39.58%), Postives = 136/240 (56.67%), Query Frame = 1
Query: 664 SGREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHI-SDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTL----ARMGERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
SGR VRD +KL R++H F ++ ++ GG A GG + TE Q + L EA+DV+A I S + V + A + + + A + +R+P + IGR + + + + + FA TS+ALR ME A C+ +EP L+VGETGCGKT L+QRLA G+ L+VQNLSLQTD +DLLGGY+PLELRQLA+++ +F++LF FS +NA
Sbjct: 48 SGRHASVRDHMKLLRRISHTIKFES--SSSLSGGGGADI---GGNN---TVTYATESQRILCLAEAVDVYAASIPSAEGRRYFVTKIAAPAFGVTADAAQRYVETRKPVVTIVSDVVEIGRARMRLAPSYPPRNNNQAGQNNQFAETSYALRYMESAAVCIAQNEPTLLVGETGCGKTTLIQRLASLYGKELIVQNLSLQTDSSDLLGGYKPLELRQLARKVYVEFVDLFTCTFSRAQNA 279
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A8K1FNU7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNU7_PYTOL) HSP 1 Score: 145 bits (367), Expect = 1.050e-33 Identity = 91/236 (38.56%), Postives = 128/236 (54.24%), Query Frame = 1
Query: 667 GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARM--GERQHVSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
GR+ +RD+LK C RV G + A V A +++E + TEE+ L ++ EA DVF I D A A W ++ E + +P + IGRV L + + SS SSF T H LRL+E+LAA V EP L+VGETGCGKT ++Q LA GQ LVVQNL++Q+D +DL+GG++P+EL +A+ L F++LF + FS + NA
Sbjct: 565 GRDFSLRDLLKWCKRV--YAFCYTGSGSNAADDDVVMA--------DDQEAYITEEERLRIVVEACDVFCSGIRDVQTRLEAAIAIGAIWQVQEERIRYMIEQHKPSVNFHLHEVEIGRVHLPALPVSASEEGGSSSSSFVMTGHVLRLLEKLAAIVYTCEPALLVGETGCGKTTVIQHLAASMGQKLVVQNLNIQSDSSDLVGGFKPVELHLIARPLYMSFVDLFSNTFSQKSNA 790
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A7S3VEM6_9STRA (Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.560e-33 Identity = 88/238 (36.97%), Postives = 128/238 (53.78%), Query Frame = 1
Query: 664 SGREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLR-VVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQH--VSSSLSSFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
+GR VRD++KL R++ F G +CTE Q + + E+ D+FA + V+ A W + ++ R+P+ + G Y+ +GR T+ R + V + S+FA T+++LRLME + +EP L+VGETGCGKT ++QRLA +G LVVQNLSLQTD DLLGGYRPLE+R +A+ + DF++LF S FS +NA
Sbjct: 657 NGRHSSVRDLVKLLYRISCIVHFEPGA------------------------TFCTESQRILCMAESFDIFASWCPCRFLRKDFVSLILAPIWGVTATAGIRYIEDRQPQIKVTGEYIEVGRSTIRRPPKSNESVVIAPRSNFADTNYSLRLMESAGVSIAQNEPTLLVGETGCGKTTIIQRLASLSGHELVVQNLSLQTDSTDLLGGYRPLEIRHIARTVYTDFVQLFVSSFSKSQNA 870
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A397EQD9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EQD9_9STRA) HSP 1 Score: 142 bits (358), Expect = 9.880e-33 Identity = 92/235 (39.15%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 667 GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLS-SFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
GR+ +RD+LK C R+ + G + E + + T+E+ S++ EA DVF I D + A A A W + E V+ RP + +GRV L+ M Q ++ F T H+LRLME+LAA V EP L+VGETGCGKT L+Q LA GQTLVVQNL++Q+D ADLLGGY+P+++ QLA+ L DF+ LF + F + NA
Sbjct: 456 GRQFSLRDMLKWCRRL------------QTLLGTI------------EAQHFLTQERRESIVREAWDVFCMGIRDPVQRVEAAVAVANLWQVPSEVVEHQLVNHRPVFTSHHKEVQVGRVHLSTMFTHQSATTGHQIPFVLTGHSLRLMEQLAATVATHEPTLLVGETGCGKTTLIQYLASALGQTLVVQNLNVQSDSADLLGGYKPVDMYQLARPLYMDFVALFGATFPSSSNA 666
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Match: A0A418BYE1_9STRA (Nudix hydrolase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BYE1_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.340e-32 Identity = 92/235 (39.15%), Postives = 127/235 (54.04%), Query Frame = 1
Query: 667 GREPGVRDVLKLCDRVAHNGLFAEGQAAEVAAGGVARAWRGGGEEEEERELWCTEEQALSVLTEALDVFAGHISDHSKLRVVAEAFAGEWNIRPETAVKLAVSRRPEQRQEGGYLAIGRVTLARMGERQHVSSSLS-SFAPTSHALRLMERLAACVRASEPVLMVGETGCGKTALVQRLAEGAGQTLVVQNLSLQTDGADLLGGYRPLELRQLAQELLNDFLELFPSLFSARKNA 1368
GR+ +RD+LK C R+ + G + E + + T+E+ S++ EA DVF I D + A A A W + E V+ RP + +GRV L+ M Q ++ F T H+LRLME+LAA V EP L+VGETGCGKT L+Q LA GQTLVVQNL++Q+D ADLLGGY+P+++ QLA+ L DF+ LF + F + NA
Sbjct: 856 GRQFSLRDMLKWCRRL------------QTLLGTI------------EAQHFLTQERRESIVREAWDVFCMGIRDPVQRVEAAVAVANLWQVPSEVVEHQLVNHRPVFTSHHKEVQVGRVHLSTMFTHQSATTGHQIPFVLTGHSLRLMEQLAATVATHEPTLLVGETGCGKTTLIQYLASALGQTLVVQNLNVQSDSADLLGGYKPVDMYQLARPLYMDFVALFGATFPSSSNA 1066 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20493.1 >prot_S-ischiensis_contig9.20493.1 ID=prot_S-ischiensis_contig9.20493.1|Name=mRNA_S-ischiensis_contig9.20493.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=283bp MWSLSPPTRSSKWPPHAIHTSPGLLRNASCAHSRPRQLPGAGGGGSCSGRback to top mRNA from alignment at S-ischiensis_contig9:757141..767443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20493.1 ID=mRNA_S-ischiensis_contig9.20493.1|Name=mRNA_S-ischiensis_contig9.20493.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=10303bp|location=Sequence derived from alignment at S-ischiensis_contig9:757141..767443- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:757141..767443- >mRNA_S-ischiensis_contig9.20493.1 ID=mRNA_S-ischiensis_contig9.20493.1|Name=mRNA_S-ischiensis_contig9.20493.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1698bp|location=Sequence derived from alignment at S-ischiensis_contig9:757141..767443- (Schizocladia ischiensis KU_0333)back to top |