mRNA_S-ischiensis_contig9.20477.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20477.1
Unique NamemRNA_S-ischiensis_contig9.20477.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A291AXK3_9CAUD (HNH homing endonuclease n=1 Tax=Shigella phage Sf12 TaxID=2024315 RepID=A0A291AXK3_9CAUD)

HSP 1 Score: 63.9 bits (154), Expect = 3.250e-9
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  226 VHRLVYRTWKGKFPANKSAGNGKEAERLVLHHRDKNKANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQ 561
             HR+++  + GK P       G E +  + H RD N+  N    L  VS   N  K + + ++NTSG  G  W K + K++A I ++GK KH+GYFVD   A  AR + EK+
Sbjct:   62 AHRIIWEIYNGKIPK------GMEIDH-INHIRDDNRIEN----LRLVSKQDNL-KNQSKRNDNTSGVTGVSWNKREQKFRAYININGKEKHIGYFVDLKSAVLARKSLEKE 161
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A258MS26_9BACT (AP2/ERF domain-containing protein n=1 Tax=Sphingobacteriia bacterium 35-40-8 TaxID=1970576 RepID=A0A258MS26_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.310e-8
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  307 LVLHHRDKNKANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQY 564
            L + HR+ +  +N   NL   +   N R R   A++ TSG  G  W K +GKW A I +DGK++HLGYF++ ++A  A  AA  Q+
Sbjct:   82 LQVDHRNGDGLDNQRVNLRLATRAQNNRNRRMNATS-TSGVKGVRWHKRRGKWFAAITLDGKQRHLGYFLNTAEAAAAYAAASAQF 166
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A396MU78_9CLOT (AP2/ERF domain-containing protein n=3 Tax=unclassified Clostridium TaxID=2614128 RepID=A0A396MU78_9CLOT)

HSP 1 Score: 58.2 bits (139), Expect = 1.340e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  406 ASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQYWE 570
            A NNTSG  G Y R++ GKW+A I   GK  +LG FVD  DA KARL AEK+Y++
Sbjct:   50 AVNNTSGHRGVY-RRENGKWRASIGFQGKVYNLGTFVDYEDAVKARLEAEKKYYD 103
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: UPI001CD623A2 (HNH endonuclease n=1 Tax=Salipiger bermudensis TaxID=344736 RepID=UPI001CD623A2)

HSP 1 Score: 58.9 bits (141), Expect = 3.180e-7
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  223 SVHRLVYRTWKGKFPANKSAGNGKEAERLVLHHRDKNKANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQY 564
            S HR+++   KG +P         +A    + H + N+ +N+  NL  VS++ N    + R +NNTSG  G +     G+W A I   G+R+HLG F++K +A KAR  AE+ +
Sbjct:   84 SAHRVLWCLAKGGWP---------DAS-YQIDHINGNRTDNALANLRLVSNIENHMNTK-RPTNNTSGCVGVFLEPRTGRWVAQIYAQGRRRHLGTFIEKEEAIKARNLAERAH 186
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A2T3FV57_9CLOT (AP2/ERF domain-containing protein n=9 Tax=Clostridium TaxID=1485 RepID=A0A2T3FV57_9CLOT)

HSP 1 Score: 58.2 bits (139), Expect = 9.850e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  406 ASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQYWE 570
            A NNTSG  G Y R++ GKW+A I   GK  +LG FVD  DA KARL AEK+Y++
Sbjct:  177 AVNNTSGHRGVY-RRENGKWRASIGFQGKVYNLGTFVDYEDAVKARLEAEKKYYD 230
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: UPI000B40DFC7 (HNH endonuclease n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI000B40DFC7)

HSP 1 Score: 54.7 bits (130), Expect = 1.570e-6
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  334 KANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQY 564
            + +N   NL  V+   N R +    +N +SG  G  W   K KW+ACI VDGK  HLGYF +K  A  AR  A ++Y
Sbjct:    6 RTDNRIENLREVTRRENMRNKRVSVAN-SSGTTGVGWSSAKQKWRACIKVDGKFIHLGYFEEKRAAIAAREEANRKY 81
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A1S8KL66_9LACT (AP2/ERF domain-containing protein n=5 Tax=Dolosigranulum pigrum TaxID=29394 RepID=A0A1S8KL66_9LACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.610e-6
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  397 EGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQYWE 570
            +G  +NNTSG  G Y+ + K  W A I   G++ +LG + +KS+A KAR AAEK+YW+
Sbjct:  142 DGMYANNTSGVRGVYYNERKNSWIAHIGAKGEKYYLGSYKEKSEAIKARKAAEKKYWK 199
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A1G2YA83_9BACT (AP2/ERF domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_44_8b TaxID=1801960 RepID=A0A1G2YA83_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 2.170e-6
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:  307 LVLHHRDKNKANNSARNLEFVSHVANC---RKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQY 564
            L++ H+D N  NNS  NL   +   NC   RK+ G +S       G  + K  GKW   I  +G+R HLGYFV++ +A +   AA ++Y
Sbjct:   12 LIIDHKDHNGLNNSRANLRPATKAQNCWNRRKKPGCSSK----YKGVCFNKALGKWAGSIRFEGRRSHLGYFVNEEEAARTYDAAARKY 96
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BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A6S6SW61_9PROT (HNH homing endonuclease n=1 Tax=uncultured Sulfurovum sp. TaxID=269237 RepID=A0A6S6SW61_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 3.970e-6
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  307 LVLHHRDKNKANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKA 540
            +V+ H D NK NN   NL+ +++  N  K     S   S   G  WRK++ KW + I ++GKRKHLG F+++ DA  A
Sbjct:   88 IVVDHIDNNKLNNRLDNLQLITNRENVSKE----SRGKSKYTGVSWRKNRNKWISTICINGKRKHLGSFINEIDAHYA 161
[Close]
BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Match: A0A328KEI3_9LACT (AP2/ERF domain-containing protein n=2 Tax=Dolosigranulum pigrum TaxID=29394 RepID=A0A328KEI3_9LACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.760e-6
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  397 EGRASNNTSGANGAYWRKDKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQYWE 570
            +G  +NNTSG  G Y+ K +  W A I   G++ +LG + +KS+A KAR AAEK+YW+
Sbjct:  142 DGMYANNTSGTRGVYFDKRRKSWIAHIGAKGEKYYLGSYKEKSEAIKARKAAEKKYWK 199
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A291AXK3_9CAUD3.250e-936.61HNH homing endonuclease n=1 Tax=Shigella phage Sf1... [more]
A0A258MS26_9BACT2.310e-839.53AP2/ERF domain-containing protein n=1 Tax=Sphingob... [more]
A0A396MU78_9CLOT1.340e-756.36AP2/ERF domain-containing protein n=3 Tax=unclassi... [more]
UPI001CD623A23.180e-734.21HNH endonuclease n=1 Tax=Salipiger bermudensis Tax... [more]
A0A2T3FV57_9CLOT9.850e-756.36AP2/ERF domain-containing protein n=9 Tax=Clostrid... [more]
UPI000B40DFC71.570e-641.56HNH endonuclease n=1 Tax=Pseudomonas aeruginosa Ta... [more]
A0A1S8KL66_9LACT1.610e-646.55AP2/ERF domain-containing protein n=5 Tax=Dolosigr... [more]
A0A1G2YA83_9BACT2.170e-637.08AP2/ERF domain-containing protein n=1 Tax=Planctom... [more]
A0A6S6SW61_9PROT3.970e-639.74HNH homing endonuclease n=1 Tax=uncultured Sulfuro... [more]
A0A328KEI3_9LACT5.760e-646.55AP2/ERF domain-containing protein n=2 Tax=Dolosigr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:641300..642131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score68.2
Seed ortholog evalue4.9e-09
Seed eggNOG ortholog329254.Q2NPG0_9CAUD
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239,4QKM7@10699,4QPDE@28883,4QUQC@35237
COG Functional cat.S
Best tax levelSiphoviridae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size638
Cds size573
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20477.1prot_S-ischiensis_contig9.20477.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 641364..642131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.3144584-UTR-S-ischiensis_contig9:641299..6413631622817379.3144584-UTR-S-ischiensis_contig9:641299..641363Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 641300..641363 -
1695741068.6617453-UTR-S-ischiensis_contig9:641299..6413631695741068.6617453-UTR-S-ischiensis_contig9:641299..641363Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 641300..641363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.3276658-CDS-S-ischiensis_contig9:641363..6418571622817379.3276658-CDS-S-ischiensis_contig9:641363..641857Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 641364..641857 -
1695741068.6779883-CDS-S-ischiensis_contig9:641363..6418571695741068.6779883-CDS-S-ischiensis_contig9:641363..641857Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 641364..641857 -
1622817379.3394487-CDS-S-ischiensis_contig9:642052..6421311622817379.3394487-CDS-S-ischiensis_contig9:642052..642131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 642053..642131 -
1695741068.692989-CDS-S-ischiensis_contig9:642052..6421311695741068.692989-CDS-S-ischiensis_contig9:642052..642131Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 642053..642131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20477.1

>prot_S-ischiensis_contig9.20477.1 ID=prot_S-ischiensis_contig9.20477.1|Name=mRNA_S-ischiensis_contig9.20477.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
QSLDVRGAGAPGPAELAAAPDTAGARGGQGGPRAVCGGVRAQQQEERADA
DTLRQEVRAPLGQRYDANGRWCNQSVHRLVYRTWKGKFPANKSAGNGKEA
ERLVLHHRDKNKANNSARNLEFVSHVANCRKREGRASNNTSGANGAYWRK
DKGKWKACIPVDGKRKHLGYFVDKSDAKKARLAAEKQYWE*
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mRNA from alignment at S-ischiensis_contig9:641300..642131-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20477.1 ID=mRNA_S-ischiensis_contig9.20477.1|Name=mRNA_S-ischiensis_contig9.20477.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=832bp|location=Sequence derived from alignment at S-ischiensis_contig9:641300..642131- (Schizocladia ischiensis KU_0333)
CAAAGCTTGGACGTACGTGGAGCCGGAGCGCCCGGACCTGCTGAACTGGC
GGCAGCACCCGACACTGCCGGAGCTCGAGGTGAGCATTGTGCCCGCATGG
GGTGGTGTTGTCGCCCGCTCTTTTTTGGTGGGGCACCTGGTATGGGATTG
TGGCTGTGTTGAGTTTGCAAGGAGTGCCACCCAAAGCGCCTGCTACCGGC
TGCATCCTTGTGCCGCACCCTGACTCCCGCCCTGCCCCGTCCCGACGCTG
GCCCCGTCGCTGGTTTCCCCGCAGGTGGCCAGGGAGGGCCACGTGCGGTA
TGCGGCGGGGTTCGTGCCCAACAACAAGAAGAGAGGGCGGATGCTGACAC
CCTACGCCAAGAAGTTAGGGCACCTCTGGGTCAAAGGTATGACGCCAACG
GGCGGTGGTGCAACCAGTCCGTGCACAGGCTGGTGTACCGGACGTGGAAG
GGGAAATTCCCAGCCAACAAGTCGGCAGGGAACGGGAAGGAGGCGGAGCG
GCTCGTCCTGCACCACAGGGACAAGAACAAGGCCAACAACAGCGCCCGCA
ACCTGGAGTTCGTCTCCCACGTGGCCAACTGCCGCAAGCGCGAGGGCCGC
GCCAGCAACAACACCAGCGGGGCCAACGGCGCGTACTGGCGCAAGGACAA
GGGCAAGTGGAAGGCCTGCATCCCTGTAGACGGCAAGCGCAAGCACCTGG
GCTACTTTGTGGACAAGAGCGACGCCAAGAAGGCCCGCCTCGCTGCGGAG
AAACAGTACTGGGAGTAGTCGGGTGGCGATTGGTAGGGCGTGTTTGTAGG
TTGGGCGGGTAGAGCAGGGGTTGGTTGTGTAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:641300..642131-

>mRNA_S-ischiensis_contig9.20477.1 ID=mRNA_S-ischiensis_contig9.20477.1|Name=mRNA_S-ischiensis_contig9.20477.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig9:641300..642131- (Schizocladia ischiensis KU_0333)
CAAAGCTTGGACGTACGTGGAGCCGGAGCGCCCGGACCTGCTGAACTGGC
GGCAGCACCCGACACTGCCGGAGCTCGAGCAAAGCTTGGACGTACGTGGA
GCCGGAGCGCCCGGACCTGCTGAACTGGCGGCAGCACCCGACACTGCCGG
AGCTCGAGGTGGCCAGGGAGGGCCACGTGCGGTATGCGGCGGGGTTCGTG
CCCAACAACAAGAAGAGAGGGCGGATGCTGACACCCTACGCCAAGAAGTT
AGGGCACCTCTGGGTCAAAGGTATGACGCCAACGGGCGGTGGTGCAACCA
GTCCGTGCACAGGCTGGTGTACCGGACGTGGAAGGGGAAATTCCCAGCCA
ACAAGTCGGCAGGGAACGGGAAGGAGGCGGAGCGGCTCGTCCTGCACCAC
AGGGACAAGAACAAGGCCAACAACAGCGCCCGCAACCTGGAGTTCGTCTC
CCACGTGGCCAACTGCCGCAAGCGCGAGGGCCGCGCCAGCAACAACACCA
GCGGGGCCAACGGCGCGTACTGGCGCAAGGACAAGGGCAAGTGGAAGGCC
TGCATCCCTGTAGACGGCAAGCGCAAGCACCTGGGCTACTTTGTGGACAA
GAGCGACGCCAAGAAGGCCCGCCTCGCTGCGGAGAAACAGTACTGGGAGT
AGGTGGCCAGGGAGGGCCACGTGCGGTATGCGGCGGGGTTCGTGCCCAAC
AACAAGAAGAGAGGGCGGATGCTGACACCCTACGCCAAGAAGTTAGGGCA
CCTCTGGGTCAAAGGTATGACGCCAACGGGCGGTGGTGCAACCAGTCCGT
GCACAGGCTGGTGTACCGGACGTGGAAGGGGAAATTCCCAGCCAACAAGT
CGGCAGGGAACGGGAAGGAGGCGGAGCGGCTCGTCCTGCACCACAGGGAC
AAGAACAAGGCCAACAACAGCGCCCGCAACCTGGAGTTCGTCTCCCACGT
GGCCAACTGCCGCAAGCGCGAGGGCCGCGCCAGCAACAACACCAGCGGGG
CCAACGGCGCGTACTGGCGCAAGGACAAGGGCAAGTGGAAGGCCTGCATC
CCTGTAGACGGCAAGCGCAAGCACCTGGGCTACTTTGTGGACAAGAGCGA
CGCCAAGAAGGCCCGCCTCGCTGCGGAGAAACAGTACTGGGAGTAG
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