mRNA_S-ischiensis_contig9.20476.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.670e-28 Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = -2
Query: 277 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMV 525
AIK KMPWL +RVVVQQDGASPHTGKGNPE LN G +R W +EL+TQ QSPDLNINDLG F SLK V G +++E+V
Sbjct: 282 AIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3) HSP 1 Score: 84.7 bits (208), Expect = 5.140e-16 Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = -2
Query: 145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
AIKAK P R +V+QQD A PH + +++ V S + I L Q SPDLNINDLGFF ++ TTV E+V V + YE+ TL VW SL ++LR G+N ++ H G
Sbjct: 295 AIKAKWPLDCNRPIVIQQDNARPHICNTDLDFIE-VAKSDGFNITLANQPANSPDLNINDLGFFRVIQGLQHEKAPTTVCELVGAVLEAYEEVSDSTLNHVWLSLMGCMTEILRKDGNNNYKLPHIG 420
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.230e-15 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = -2
Query: 154 GRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHT-TVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVE 495
G + +QQDGA PHT +L G + +++ TQ QSPDLN+NDLGFF SLK +VEEM++ + YE+ A L+R++ SL + + +L+ GDN E
Sbjct: 29 GTPIWIQQDGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQE 141
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00053FEDAB (uncharacterized protein LOC104888959 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEDAB) HSP 1 Score: 77.4 bits (189), Expect = 6.710e-14 Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = -2
Query: 145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
AIK+ P +++ +QQD A PH + +L S+ + I L+ Q QSPDLN+ DLGFF S+++ T+EE+V++V EY+ YD KT+ W +VL++ G N + H G
Sbjct: 111 AIKSNWPEFGCKQIWIQQDNARPHIKPDDEAFLQ-AASTDGFDILLVYQPPQSPDLNLLDLGFFKSIQSIQHTNFPETIEELVKSVQAEYDAYDPKTINYTWLHFMYVMLEVLKVEGGNNYKNPHKG 236
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR) HSP 1 Score: 75.5 bits (184), Expect = 8.640e-14 Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = -2
Query: 151 KMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 513
K+ W G+RV +Q D A PH +PE + S W + + Q SPD N+NDLGFF S+++ T+E++V V + Y + + T+++V+ +L S + + G N+ ++ H
Sbjct: 26 KVVWPSGKRVFLQHDNAKPHVAADDPEVVAAC-SDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPH 145
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN) HSP 1 Score: 75.5 bits (184), Expect = 3.920e-13 Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = -2
Query: 151 KMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 513
K+ W G+RV +Q D A PH +PE + S W + + Q SPD N+NDLGFF S+++ T+E++V V + Y + + T+++V+ +L S + + G N+ ++ H
Sbjct: 127 KVVWPSGKRVFLQHDNAKPHVAADDPEVVAAC-SDGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPH 246
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: A0A484LEG5_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LEG5_9ASTE) HSP 1 Score: 74.7 bits (182), Expect = 6.450e-13 Identity = 42/127 (33.07%), Postives = 69/127 (54.33%), Query Frame = -2
Query: 145 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEHSG 525
AIK K P R V++QQD A PH + ++L + W I+L Q + SPDLN+ DLGFF ++ + +G ++++++ V +E+ + L V+ +L +QVL G NQ ++ H G
Sbjct: 89 AIKEKWPG-SSRNVIIQQDNAKPHVDGSDLQFLQ-AATEGEWNIKLKFQPLNSPDLNVLDLGFFRAIDSLQDQSGPRSLDDLISAVTTAFEELSHEKLNNVFLTLQGVMSQVLATNGGNQFKIPHIG 213
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00053FF3FD (uncharacterized protein LOC104886291 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF3FD) HSP 1 Score: 75.9 bits (185), Expect = 6.630e-13 Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = -2
Query: 151 IKAKMPWLEG--RRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 522
I AK P +G + + +QQD A H + +P++ V +TI L+ Q SPDLNI DLGFF S+++ + +++ ++E VN Y + D TL VW SL N++L++ G N V H
Sbjct: 292 IIAKWPQYDGGPKTIYIQQDNAKAHISQEDPQWQT-VCEQDGFTIILIQQPPNSPDLNILDLGFFRSIQSLMHKKIPKSIDSLLEAVNQAYNELDHTTLSNVWLSLQYVMNEILKVGGGNNYNVPH 416
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI000B78E139 (uncharacterized protein LOC110707397 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78E139) HSP 1 Score: 75.1 bits (183), Expect = 1.310e-12 Identity = 41/125 (32.80%), Postives = 71/125 (56.80%), Query Frame = -2
Query: 151 AIKAKMPWLEGRRVVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 525
AI +K P + VV+Q D A PH + E++ ++ R+ I+ + Q VQSPDLN+ DLG F S+++ + T ++E+V V D YE ++ + + +W SL ++L+ G N+ ++ H
Sbjct: 354 AIISKWPESLAKNVVIQWDNARPHQVPKDAEFMEAT-TAHRFNIQFVFQPVQSPDLNVLDLGLFRSIQSLQYQSFPTNLDELVVKVKDSYETFNHQVNKYIWLSLQKCMIEILKAEGGNKYKIPH 477
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Match: UPI00149399A0 (uncharacterized protein LOC117856442 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI00149399A0) HSP 1 Score: 73.6 bits (179), Expect = 1.490e-12 Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = -2
Query: 151 VVVQQDGASPHTGKGNPEYLNYVGSSRRWTIELLTQSVQSPDLNINDLGFFVSLKA*VLGAGHTTVEEMVETVNDEYEKYDAKTLERVWQSLFSRHNQVLRLLGDNQAEVEH 486
+ +QQD H +P +L V ++ I L+ Q SPD+N+ DL FF SL++ TT+EE+++ V +EYE YD + L RV+ SL +V+ + G N+ + H
Sbjct: 120 IYIQQDNTRTHVSLNDPAFLQAVAATGL-DIRLMQQPPNSPDMNVLDLDFFRSLQSLTDSRNPTTIEELIQGVEEEYEAYDVENLNRVFLSLQMCMKEVMNIGGGNRYKNPH 230 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20476.1 >prot_S-ischiensis_contig9.20476.1 ID=prot_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp TRCCTLKIRLLLVNLSVTPKHEIHGPAVGIPVDFRPFAGKAPGRPARIAGback to top mRNA from alignment at S-ischiensis_contig9:627428..627953+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20476.1 ID=mRNA_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=526bp|location=Sequence derived from alignment at S-ischiensis_contig9:627428..627953+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:627428..627953+ >mRNA_S-ischiensis_contig9.20476.1 ID=mRNA_S-ischiensis_contig9.20476.1|Name=mRNA_S-ischiensis_contig9.20476.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig9:627428..627953+ (Schizocladia ischiensis KU_0333)back to top |