mRNA_S-ischiensis_contig9.20473.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20473.1
Unique NamemRNA_S-ischiensis_contig9.20473.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:617779..618861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.3902686-CDS-S-ischiensis_contig9:617778..6179631622817364.3902686-CDS-S-ischiensis_contig9:617778..617963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 617779..617963 -
1695741058.918-CDS-S-ischiensis_contig9:617778..6179631695741058.918-CDS-S-ischiensis_contig9:617778..617963Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 617779..617963 -
1622817364.4034176-CDS-S-ischiensis_contig9:618800..6188611622817364.4034176-CDS-S-ischiensis_contig9:618800..618861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 618801..618861 -
1695741058.9334025-CDS-S-ischiensis_contig9:618800..6188611695741058.9334025-CDS-S-ischiensis_contig9:618800..618861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 618801..618861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20473.1prot_S-ischiensis_contig9.20473.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 617779..618861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20473.1

>prot_S-ischiensis_contig9.20473.1 ID=prot_S-ischiensis_contig9.20473.1|Name=mRNA_S-ischiensis_contig9.20473.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
MEGQGGLAHVRKSLADVLFHAADMRIASAAAAAPATRAGAESGLCRYATP
SRRSSVGGDARDDRTVSGGGGGGGGGGGGGGS
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mRNA from alignment at S-ischiensis_contig9:617779..618861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20473.1 ID=mRNA_S-ischiensis_contig9.20473.1|Name=mRNA_S-ischiensis_contig9.20473.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1083bp|location=Sequence derived from alignment at S-ischiensis_contig9:617779..618861- (Schizocladia ischiensis KU_0333)
ATGGAAGGGCAGGGGGGGCTCGCGCACGTGCGGAAGAGCTTGGCGGATGT
GCTGTTCCACGGTGAGGGTCAGATACTTATTGTTGACGGGCAGTGATGGA
ATATCGATCAGTAGATAGTTATCGGGCTCGACTGATTTTGTGGGTGGCGT
TACTAACTACTTGGATTTAGTGTAGGTCAAACTATCGAACATCGAGTGTC
GATAGATATATAGATCAGTACTGTCGACACATAGGTTAATTTGCTTAGAT
ATTCCATCACTGTTGACGGGCGCTTCCTTGTGCCGTACTTTCTGTAGTAG
TACCAGGTAGAGTTTCATACTTCGAAGCACCTCCAAAATTGGGTCCACGG
TGAGGGTCAGATACTTATTGTTGACGCGCGCTTCTTTGTCCCCTTACTGT
AATCTAAAAGTGTCAGGCAGAGGTACTTGGAAGCACCTCCAAACCTTGTC
CCGTTACTGTTCTCTACAGTCGTAACAGGGAGAGGTACATACTTCGAAGC
ACCTCCAAAAAGTAGGTGTTCGTGAGTACATGTACTGGCATGGGCTCTGT
GTTCCCGGGGGAATTATAACCCGTTTGCGCCGCGCCATTGGTCTTCAGTA
CTTCCCACTGAAGTGCAATTGCTCTACCGAGAGCACACACACATATATTT
ATGTGTGTACACATATATTTATGTGTGTGTGTTGTATGTGTGTGTGTGTA
CTCATCTTGTGCTTGCCGTAGCACCGAGACAATTGACCCCCATTGCATCT
CGACCGAGACGGAGCAGGCTACAGCACATGGCCACCGGCTCAACCTACGT
AGCCCCTCGCCCCCCGCCCCCCACGCCCGTGCCCACGCCCAACCCCACGG
ACCCCACGTGCTCGCGTGTTACGCGCGCGCGCCCTCGCCAAACCTCAGCC
GCGGACATGCGCATCGCATCGGCAGCCGCCGCCGCCCCCGCCACCAGGGC
GGGTGCGGAGTCCGGGCTCTGCCGCTATGCCACTCCGAGCCGCAGGAGCA
GTGTGGGCGGTGACGCCCGTGATGACCGCACCGTCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:617779..618861-

>mRNA_S-ischiensis_contig9.20473.1 ID=mRNA_S-ischiensis_contig9.20473.1|Name=mRNA_S-ischiensis_contig9.20473.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig9:617779..618861- (Schizocladia ischiensis KU_0333)
ATGGAAGGGCAGGGGGGGCTCGCGCACGTGCGGAAGAGCTTGGCGGATGT
GCTGTTCCACGATGGAAGGGCAGGGGGGGCTCGCGCACGTGCGGAAGAGC
TTGGCGGATGTGCTGTTCCACGCCGCGGACATGCGCATCGCATCGGCAGC
CGCCGCCGCCCCCGCCACCAGGGCGGGTGCGGAGTCCGGGCTCTGCCGCT
ATGCCACTCCGAGCCGCAGGAGCAGTGTGGGCGGTGACGCCCGTGATGAC
CGCACCGTCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
TGGCAGCCCGCGGACATGCGCATCGCATCGGCAGCCGCCGCCGCCCCCGC
CACCAGGGCGGGTGCGGAGTCCGGGCTCTGCCGCTATGCCACTCCGAGCC
GCAGGAGCAGTGTGGGCGGTGACGCCCGTGATGACCGCACCGTCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGC
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