mRNA_S-ischiensis_contig9.20467.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20467.1
Unique NamemRNA_S-ischiensis_contig9.20467.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:605226..605830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.349352-CDS-S-ischiensis_contig9:605226..6053491622817364.349352-CDS-S-ischiensis_contig9:605226..605349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 605227..605349 -
1695741058.8938956-CDS-S-ischiensis_contig9:605226..6053491695741058.8938956-CDS-S-ischiensis_contig9:605226..605349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 605227..605349 -
1622817364.3611972-CDS-S-ischiensis_contig9:605587..6058301622817364.3611972-CDS-S-ischiensis_contig9:605587..605830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 605588..605830 -
1695741058.9050212-CDS-S-ischiensis_contig9:605587..6058301695741058.9050212-CDS-S-ischiensis_contig9:605587..605830Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 605588..605830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20467.1prot_S-ischiensis_contig9.20467.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 605227..605830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20467.1

>prot_S-ischiensis_contig9.20467.1 ID=prot_S-ischiensis_contig9.20467.1|Name=mRNA_S-ischiensis_contig9.20467.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
GRRGSSSSSASSSSLSSSSSFWARSMANLRRIASVGKGQEGLPGGGQARP
PPAEVLLPTRVVLREEGEGMQGQGRVLRVLQVACGGLHTLAIAVAPIPST
PPTSAWAAAAAAEAVGPDCGAS
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mRNA from alignment at S-ischiensis_contig9:605226..605830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20467.1 ID=mRNA_S-ischiensis_contig9.20467.1|Name=mRNA_S-ischiensis_contig9.20467.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=605bp|location=Sequence derived from alignment at S-ischiensis_contig9:605226..605830- (Schizocladia ischiensis KU_0333)
GGGCGGCGAGGGTCCTCCTCCTCCTCTGCCTCCTCCTCCTCCTTGTCCTC
GTCCTCGTCCTTCTGGGCGCGGAGCATGGCCAACCTCAGGAGGATTGCGA
GCGTCGGCAAAGGGCAGGAGGGGCTGCCCGGGGGCGGGCAGGCCCGACCC
CCCCCTGCAGAGGTTTTGCTGCCCACGCGGGTGGTCCTCCGCGAGGAGGG
GGAAGGCATGCAGGGGCAAGGGCGGGTGCTGCGGGTTCTACAGGTAACCA
TGGCACCAAATTGCCATCGCTATTTTTGGTGCCCGGGCCGCCCTATGAAG
GATGCGTCTGATGACCGTGAAATTTAGACGCGTGAAAGAGCTCGATGAGT
GCGTTCATTTGCACTACAGTTTTCGTACTTGTATCACAACAGCACATGGA
CCGCGCAACAGGTCAATCGATATTCGAGAAAACGATTTGAGAAAAAAAAA
AAACGCGCTGTTGTACCGTGGTTGTCTGCAGGTGGCCTGCGGCGGTCTGC
ACACGCTGGCCATTGCCGTGGCGCCCATACCGTCAACGCCGCCAACGTCA
GCCTGGGCGGCGGCTGCTGCTGCTGAGGCTGTGGGGCCTGACTGTGGCGC
CTCAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:605226..605830-

>mRNA_S-ischiensis_contig9.20467.1 ID=mRNA_S-ischiensis_contig9.20467.1|Name=mRNA_S-ischiensis_contig9.20467.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig9:605226..605830- (Schizocladia ischiensis KU_0333)
GGGCGGCGAGGGTCCTCCTCCTCCTCTGCCTCCTCCTCCTCCTTGTCCTC
GTCCTCGTCCTTCTGGGCGCGGAGCATGGCCAACCTCAGGAGGATTGCGA
GCGTCGGCAAAGGGCAGGAGGGGCTGCCCGGGGGCGGGCAGGCCCGACCC
CCCCCTGCAGAGGTTTTGCTGCCCACGCGGGTGGTCCTCCGCGAGGAGGG
GGAAGGCATGCAGGGGCAAGGGCGGGTGCTGCGGGTTCTACAGGGGCGGC
GAGGGTCCTCCTCCTCCTCTGCCTCCTCCTCCTCCTTGTCCTCGTCCTCG
TCCTTCTGGGCGCGGAGCATGGCCAACCTCAGGAGGATTGCGAGCGTCGG
CAAAGGGCAGGAGGGGCTGCCCGGGGGCGGGCAGGCCCGACCCCCCCCTG
CAGAGGTTTTGCTGCCCACGCGGGTGGTCCTCCGCGAGGAGGGGGAAGGC
ATGCAGGGGCAAGGGCGGGTGCTGCGGGTTCTACAGGTGGCCTGCGGCGG
TCTGCACACGCTGGCCATTGCCGTGGCGCCCATACCGTCAACGCCGCCAA
CGTCAGCCTGGGCGGCGGCTGCTGCTGCTGAGGCTGTGGGGCCTGACTGT
GGCGCCTCAGTGGCCTGCGGCGGTCTGCACACGCTGGCCATTGCCGTGGC
GCCCATACCGTCAACGCCGCCAACGTCAGCCTGGGCGGCGGCTGCTGCTG
CTGAGGCTGTGGGGCCTGACTGTGGCGCCTCA
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