mRNA_S-ischiensis_contig9.20466.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20466.1
Unique NamemRNA_S-ischiensis_contig9.20466.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A7X6CID7_9CYAN (DNA alkylation repair protein n=1 Tax=Microcoleus sp. SU_5_6 TaxID=2720483 RepID=A0A7X6CID7_9CYAN)

HSP 1 Score: 196 bits (498), Expect = 6.830e-58
Identity = 103/238 (43.28%), Postives = 148/238 (62.18%), Query Frame = 1 
Query:   43 AVLSIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEK 753
            ++ ++Q  LA   D KT+ WW  Y+K +  FRG+ +  VR ++H   K        P+ +LD  ++L+ E   EDK+A IL +QEVLL     +WES + +  + F AG + +W+ CDW CVKVL  L+K  G+ CA A+  W +A  LW++RAS V+FVN+AK+GD  NFP F+ MLL  C  ++ +   ERFAQTG GW LRELS A+R  VV  ++  + +   S+EG+RYA EK
Sbjct:    2 SIENLQELLAEAGDRKTKEWWEAYLKHSLPFRGLKLPQVRAILHAWIKTENFTDRLPSKQLDTALSLIREPWGEDKLAGILIIQEVLLKHKSIDWESDLPKFAELFDAGYIKEWNTCDWFCVKVLNPLIKQQGKSCATAVMEWCKADNLWRKRASVVSFVNIAKQGD-RNFPDFTQMLLNTCGVVIQS--SERFAQTGTGWALRELSLADRQAVVDFIQINSTK--FSSEGLRYAMEK 234
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A0T7BNL8_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=A0A0T7BNL8_9CYAN)

HSP 1 Score: 196 bits (497), Expect = 7.810e-58
Identity = 101/238 (42.44%), Postives = 145/238 (60.92%), Query Frame = 1 
Query:   43 AVLSIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEK 753
            A+  +Q +LA   D+KT+AWW +Y+K +  FRG+ +  VR +VH+  K     +  P+ + D  + L+ E   EDK+A IL +QE L+     NWES + +    F  G + +W+ CDW CVKVL  L+K  G+ CA A+  W +A  LW++RAS V+FVN+AK GD  NFP F+ MLL  C  +V +   ERFAQTG GW LRELS ++R  V+  ++  +     S+EG+RY  EK
Sbjct:    2 AIAQLQAQLAQAGDSKTQAWWESYLKHSLPFRGLKLPQVRAIVHSWVKTTNFSSQLPSQQFDTAVTLIREPWGEDKLAGILLLQEFLIKHRLVNWESDLPKFATLFDEGDIKEWNTCDWFCVKVLNPLIKQQGKSCAAAVMQWCKAENLWRKRASVVSFVNIAKHGD-RNFPNFTQMLLNTCGVVVQS--PERFAQTGIGWALRELSLSDRNLVIDFIKTNST--YFSSEGLRYTLEK 234
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: K9V1T7_9CYAN (DNA alkylation repair enzyme n=3 Tax=unclassified Calothrix TaxID=2619626 RepID=K9V1T7_9CYAN)

HSP 1 Score: 186 bits (473), Expect = 4.550e-54
Identity = 96/237 (40.51%), Postives = 142/237 (59.92%), Query Frame = 1 
Query:   46 VLSIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEK 753
            +  +Q +LA   D+KT+ WW  Y+K +  FRG+ +  VR ++H+  K     +     + +  + L+ E+  EDK+A IL +QE LL     NWES + +    F    + +W+ CDW CVKVL  L+K  G+ CA+A+  W  A  LW++RAS V+FVN+AK G+  NFPGF+ MLL +C  +V +   ERFAQTG GW LRELS ++R  V+  ++  +     S+EG+RY  EK
Sbjct:    6 ITQLQEQLAQAGDSKTKEWWEAYLKHSLPFRGLKLPQVRAILHSWAKTANFSSQPVTQQFETAIVLIQESWGEDKLAGILLLQEFLLKHRLINWESDLPKFATLFDEAYIKEWNTCDWFCVKVLNPLIKQQGKSCAEAIMQWCEAENLWRKRASVVSFVNIAKHGE-SNFPGFTQMLLHSCGVVVQS--SERFAQTGTGWALRELSLSDRNLVIDFIKTNST--YFSSEGLRYGMEK 237
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A3P5VV06_9SPIR (Uncharacterized protein n=1 Tax=Olavius algarvensis spirochete endosymbiont TaxID=260710 RepID=A0A3P5VV06_9SPIR)

HSP 1 Score: 186 bits (473), Expect = 1.050e-53
Identity = 110/245 (44.90%), Postives = 150/245 (61.22%), Query Frame = 1 
Query:   55 IQGRLAAVADAKTRAWWTNYVKG-ANFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEP--CAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEKMGSSEQKRL 780
            +Q  L A A AK+R +W  Y+KG A FRGV M G+R+ VH   +D  L   + AA+  + + L  E  TEDK+A +L   E+LLP           RL   FA+  ++DW++CDW C+KVLG +V+   +    A+ +S W+ + PLWQRRASCVAFVN AK GD    PG   +L++NC  LV     ERFAQTGAGWVLRELS  ++ +V+Q  +  A   LLS EG++   EKM + ++KRL
Sbjct:   39 LQKNLDARATAKSRNFWQKYLKGRATFRGVPMNGIRETVHAWWRDEGLHNLSIAAQKQIALRLFEEEHTEDKLAGVLAFSEILLPHLSKKDLPAFERL---FASTHISDWNLCDWFCIKVLGKMVEQSPDSFSLAKTISAWRTSRPLWQRRASCVAFVNHAKHGD-KVVPGLPDILIKNCEALVR--DSERFAQTGAGWVLRELSLHDKPRVIQFAKNHAK--LLSREGIKRIVEKMPADDKKRL 275
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A0S8DVJ6_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DVJ6_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 5.700e-45
Identity = 83/215 (38.60%), Postives = 124/215 (57.67%), Query Frame = 1 
Query:   55 IQGRLAAVADAKTRAWWTNYVK-GANFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLE 696
            +Q  L+  AD  T+ WW NYVK  A FRGV M  +R  +H   +D   E    + ++ L + L+     EDK+A IL+++E+LLP+G  +    + R    F  G + DW+VCDW CVKVLG +++  G+ CA  L+ W+ A  LWQ RA+ V FVN+A +        +  M+ + C  L+     ERFA+T  GWVLR++S+ +R  V ++LE
Sbjct:    2 LQRELSRAADVGTKVWWENYVKDSAPFRGVKMPVIRAKLHAWHEDGVAERLDQSEQVTLALNLIERKFVEDKLAGILFLEEILLPRGAIDCRRDLERFAALFHPGGIYDWNVCDWFCVKVLGPMIRDRGKRCASMLAQWRSAPFLWQARAALVPFVNVAHD------TAYHPMIAKTCNTLIRR--EERFAKTAVGWVLRDVSKHDRGFVERVLE 208
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A6J4JBB2_9ACTN (Uncharacterized protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4JBB2_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 2.450e-44
Identity = 98/241 (40.66%), Postives = 140/241 (58.09%), Query Frame = 1 
Query:   52 SIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPC---AQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEKMGS 762
            +I  +LAA AD +TR WW  Y+KG+  FRGV MA  R+VVH   + + ++     A++ L +A   E   EDK+A +L + E+LL +        V  L Q    G + DW  CDW CVKVLG  V A GE     A+A++GW+ +  LWQRRA+ V+FVNLA +G+   F GF+ ++L  C   V+     RF+QT  GW+LRELS A+ A+V Q +E     G +S E ++ A+  + S
Sbjct:   14 TIGAQLAAAADDRTREWWERYLKGSVPFRGVPMATTRRVVHDTWRRVGVDQLDGEAQIQLALAQFAEPYCEDKLAGVLALSELLLDRLTLRH---VPALAQPLERGHIEDWSTCDWYCVKVLGRFV-AMGEDRRLRAEAIAGWRTSRALWQRRAAAVSFVNLASQGE-RFFDGFTDLVLTVCAANVA--DAARFSQTSVGWLLRELSGADPARVQQFVEEH--RGSMSREALKAASSHLSS 245
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A1F4NDQ3_9BACT (Uncharacterized protein n=1 Tax=Caldithrix sp. RBG_13_44_9 TaxID=1797576 RepID=A0A1F4NDQ3_9BACT)

HSP 1 Score: 154 bits (388), Expect = 6.450e-42
Identity = 77/215 (35.81%), Postives = 127/215 (59.07%), Query Frame = 1 
Query:   55 IQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLE 696
            +Q  L  V+  KTR WW  Y++    FRG  +  +R+V+   +K+  ++TW P  +L++ + L  E + EDK+A IL++QE L  Q    W   + +    +    + DW+ CDW CV+VLG  ++ HG PCA+A+S W+++  LWQ R+S VAFV +AK  D   +P      +++   ++   P ERFA+TG GW+LR++S+ ++  V + +E
Sbjct:   11 LQNHLDEVSTPKTRQWWEKYMRQVIPFRGAGIPEIRQVLAQWRKESGIDTWPPNQQLEMALELFTEPVAEDKLAGILFLQEYLYDQFP--WPDLLKKYETIYKQNLIFDWNTCDWFCVRVLGPTIRQHGVPCARAISSWKKSKNLWQARSSVVAFVKVAK--DSCYYP-----YIRDAAAVLILRP-ERFAKTGVGWILRDISKYDKIFVDEFVE 215
[Close]
BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A7V7MNZ8_9BACT (DNA alkylation repair protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MNZ8_9BACT)

HSP 1 Score: 142 bits (358), Expect = 2.900e-36
Identity = 79/228 (34.65%), Postives = 127/228 (55.70%), Query Frame = 1 
Query:   19 IMAPQLRQAVLSIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFV-NLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLE 696
            I +  L+  + S+Q     VA  +T+ WW  Y+KG  +FRGV +  +R V+   +    +++W    + +L + L      EDK+A IL +Q + L Q  P W+ ++ R    F    ++DW+ CDW C++VL  L+ + G+ CA  +S W ++  LWQ RAS VAFV ++A+E        +   +LQ+C +L+     ERFA+TG GWVLRE+S+ +   V   +E
Sbjct:   95 ITSQHLQTPIESLQAAFQDVAKQETKLWWEAYLKGTLDFRGVGIPQIRSVLAQWRHQSGVDSWPATEQFELALQLFEYPWAEDKLAGILQIQ-LYLAQDLP-WKMSLPRYEYLFERELISDWNTCDWFCIRVLSPLIASQGKECADKISAWDQSPNLWQARASVVAFVKSIAEES-------YRFQVLQSCSKLIRR--PERFAKTGVGWVLREISKFDMEAVSGFVE 311
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A7X3X0J5_9BACT (DNA alkylation repair protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3X0J5_9BACT)

HSP 1 Score: 139 bits (350), Expect = 2.810e-35
Identity = 83/224 (37.05%), Postives = 122/224 (54.46%), Query Frame = 1 
Query:   28 PQLRQAVLSIQGRLAAVADAKTRAWWTNYVKGA-NFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLLE 696
            PQ    +  +QGRL AVA+  T+AW+ NY+K A  +RGV    V ++V   +++  L       +L L  +L+ ET+ EDK A ILYMQ  L+ + EP     VA     FA G+  DW   DW  V+VLG L++  G   A+ ++GW+ AG LWQRRA+ V F  + ++        +  ++ +    L  AG  ERF QTG GWV+ ++S+A       L+E
Sbjct:   68 PQFDAVIADLQGRLDAVAEPATKAWFENYLKHAIGYRGVKSPVVTRIVGEWRRERELGRLPVGEQLGLARSLIEETLAEDKFAGILYMQRYLVRRVEPERLLEVAE--GLFAGGAFFDWSTSDWFSVRVLGPLLRRGGSGVAERIAGWRVAGSLWQRRAAIVPFRAVVRD------EAYHALIEETIAAL--AGERERFIQTGIGWVVSDMSKAHPEVAAALVE 281
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BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Match: A0A7X3WJK0_9BACT (DNA alkylation repair protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3WJK0_9BACT)

HSP 1 Score: 136 bits (342), Expect = 7.680e-35
Identity = 70/214 (32.71%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:   55 IQGRLAAVADAKTRAWWTNYVK-GANFRGVNMAGVRKVVHTAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPNWESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQRAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERFAQTGAGWVLRELSRAERAKVVQLL 693
            +Q R+   AD K + W+ NY+K    +RGV    +   + +  +D  ++       L+L ++   E  TEDK+A IL  Q  L  + +  ++  + R  + F  G + DW VCDWLC +VL H++KA+G  CA+A+S W  A  +WQ R S VAF NL K+        +  ++ ++   L+     +RFA+T  GW+LRE+S+ ++  V+  +
Sbjct:   11 LQSRINKQADEKRKLWFENYIKHNTKYRGVTTPQITTELKSWYRDENIDKLPQNQLLELALSFFAEEYTEDKLAGILLFQHYLYKKSD--YQELLQRFEEIFNNGYIYDWSVCDWLCTRVLRHMIKANGMKCAEAISEWHTAENVWQARCSVVAFTNLTKDNT------YYELIRKSSTVLIKR--EDRFAKTAVGWILREISKVDKQIVIDFI 214
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7X6CID7_9CYAN6.830e-5843.28DNA alkylation repair protein n=1 Tax=Microcoleus ... [more]
A0A0T7BNL8_9CYAN7.810e-5842.44Uncharacterized protein n=1 Tax=Calothrix sp. 336/... [more]
K9V1T7_9CYAN4.550e-5440.51DNA alkylation repair enzyme n=3 Tax=unclassified ... [more]
A0A3P5VV06_9SPIR1.050e-5344.90Uncharacterized protein n=1 Tax=Olavius algarvensi... [more]
A0A0S8DVJ6_9GAMM5.700e-4538.60Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6J4JBB2_9ACTN2.450e-4440.66Uncharacterized protein n=1 Tax=uncultured Acidimi... [more]
A0A1F4NDQ3_9BACT6.450e-4235.81Uncharacterized protein n=1 Tax=Caldithrix sp. RBG... [more]
A0A7V7MNZ8_9BACT2.900e-3634.65DNA alkylation repair protein n=1 Tax=Planctomycet... [more]
A0A7X3X0J5_9BACT2.810e-3537.05DNA alkylation repair protein n=1 Tax=Gemmatimonad... [more]
A0A7X3WJK0_9BACT7.680e-3532.71DNA alkylation repair protein n=1 Tax=Candidatus P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:594219..601103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score198.0
Seed ortholog evalue6.5e-48
Seed eggNOG ortholog1337936.IJ00_04735
EggNOG free text desc.DNA alkylation repair enzyme
EggNOG OGs1G8NP@1117,COG4912@1,COG4912@2
COG Functional cat.L
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons8
Model size947
Cds size924
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.1118813-UTR-S-ischiensis_contig9:594218..5942391622817379.1118813-UTR-S-ischiensis_contig9:594218..594239Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 594219..594239 +
1695741068.5240812-UTR-S-ischiensis_contig9:594218..5942391695741068.5240812-UTR-S-ischiensis_contig9:594218..594239Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 594219..594239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.1231985-CDS-S-ischiensis_contig9:594239..5943691622817379.1231985-CDS-S-ischiensis_contig9:594239..594369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 594240..594369 +
1695741068.535176-CDS-S-ischiensis_contig9:594239..5943691695741068.535176-CDS-S-ischiensis_contig9:594239..594369Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 594240..594369 +
1622817379.134242-CDS-S-ischiensis_contig9:594720..5948231622817379.134242-CDS-S-ischiensis_contig9:594720..594823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 594721..594823 +
1695741068.5445411-CDS-S-ischiensis_contig9:594720..5948231695741068.5445411-CDS-S-ischiensis_contig9:594720..594823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 594721..594823 +
1622817379.1505864-CDS-S-ischiensis_contig9:595064..5951191622817379.1505864-CDS-S-ischiensis_contig9:595064..595119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 595065..595119 +
1695741068.554118-CDS-S-ischiensis_contig9:595064..5951191695741068.554118-CDS-S-ischiensis_contig9:595064..595119Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 595065..595119 +
1622817379.16397-CDS-S-ischiensis_contig9:597024..5971231622817379.16397-CDS-S-ischiensis_contig9:597024..597123Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 597025..597123 +
1695741068.5638342-CDS-S-ischiensis_contig9:597024..5971231695741068.5638342-CDS-S-ischiensis_contig9:597024..597123Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 597025..597123 +
1622817379.1803265-CDS-S-ischiensis_contig9:597739..5978091622817379.1803265-CDS-S-ischiensis_contig9:597739..597809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 597740..597809 +
1695741068.5755916-CDS-S-ischiensis_contig9:597739..5978091695741068.5755916-CDS-S-ischiensis_contig9:597739..597809Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 597740..597809 +
1622817379.1951525-CDS-S-ischiensis_contig9:598832..5989451622817379.1951525-CDS-S-ischiensis_contig9:598832..598945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 598833..598945 +
1695741068.5857003-CDS-S-ischiensis_contig9:598832..5989451695741068.5857003-CDS-S-ischiensis_contig9:598832..598945Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 598833..598945 +
1622817379.20967-CDS-S-ischiensis_contig9:599961..6001181622817379.20967-CDS-S-ischiensis_contig9:599961..600118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 599962..600118 +
1695741068.5981655-CDS-S-ischiensis_contig9:599961..6001181695741068.5981655-CDS-S-ischiensis_contig9:599961..600118Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 599962..600118 +
1622817379.2210083-CDS-S-ischiensis_contig9:600906..6011031622817379.2210083-CDS-S-ischiensis_contig9:600906..601103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 600907..601103 +
1695741068.6095138-CDS-S-ischiensis_contig9:600906..6011031695741068.6095138-CDS-S-ischiensis_contig9:600906..601103Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 600907..601103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20466.1prot_S-ischiensis_contig9.20466.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 594240..601103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20466.1

>prot_S-ischiensis_contig9.20466.1 ID=prot_S-ischiensis_contig9.20466.1|Name=mRNA_S-ischiensis_contig9.20466.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=308bp
MAPQLRQAVLSIQGRLAAVADAKTRAWWTNYVKGANFRGVNMAGVRKVVH
TAQKDLALETWTPAARLDLCMALLGETMTEDKMAAILYMQEVLLPQGEPN
WESTVARLGQAFAAGSVADWHVCDWLCVKVLGHLVKAHGEPCAQALSGWQ
RAGPLWQRRASCVAFVNLAKEGDCGNFPGFSTMLLQNCRQLVSAGPGERF
AQTGAGWVLRELSRAERAKVVQLLEACAAEGLLSAEGMRYATEKMGSSEQ
KRLQGKLKLGEQRISSRSASSSTSNDEKKSPPPRGKDQHDSKATSRGRGS
GKGKKGGG
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mRNA from alignment at S-ischiensis_contig9:594219..601103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20466.1 ID=mRNA_S-ischiensis_contig9.20466.1|Name=mRNA_S-ischiensis_contig9.20466.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6885bp|location=Sequence derived from alignment at S-ischiensis_contig9:594219..601103+ (Schizocladia ischiensis KU_0333)
GAGCAAGGGGACGTCCAGATCATGGCCCCCCAGCTGCGGCAGGCAGTTCT
CTCTATACAGGGGCGGTTGGCGGCGGTGGCAGACGCAAAGACTCGCGCGT
GGTGGACAAACTACGTCAAGGGGGCGAATTTCCGTGGCGTCAACATGGCA
GGTGCACAATTCTGGGGCGGGTGTGCAAAGTCTATGCATGCCTTTGCCCC
AAACCCCAGGCCTAGCTTAGCCCTACCAAGAGCCCCAACCTTCAGGCGTG
GAGGTATGTTTCACTTGACAAAAAGGGACGTGGTCCGCATCGCACAACCC
TAACTACGTAACCCAGGCCCCACGTAGCGCTTAAGCCCTCAAATCTCTCT
AGCGGGACAAGGCAGTCCTCCCTCAACGAACCGCCTCTACTGTACCTCGA
GCCCTACAGGTTCGATTGCACCTCGTTGCAATTTGTTCGACTCACTACCT
CTAGCGCTGAATCTAGCCCTTACCCCGACGGCAACCCAACACTGGCCCCA
AGGTGTGCGGAAAGTGGTCCACACTGCGCAGAAGGACCTCGCGCTGGAGA
CCTGGACACCCGCCGCCCGCCTGGACTTGTGCATGGCACTCCTTGGCGAG
ACCATGTGAGAACTCCTCCTCCTCCTCCTCATCATCATCATCATCATCAT
CATCATCATCATCATCATCCTTCTCCTCCTCGCCCTCCTCCTCCTCTTGT
TACGCCCATTTCGCCCCCACTGGGGCGCTCAGCAGTGACCAGGGCTTCAG
TGCGCGTGTACATGTTCCCTGGGGCCACGGCGTGCAACTGACGCTGACTC
CCAGCCTACCGCGCGGCCCTTACCCTCTTTCCGCCTCTCCCCCCAGGACG
GAGGACAAAATGGCCGCAATTCTGTACATGCAAGAGGTCTTGCTTCCGCA
GGTGGGCGGTGGCCAAACTATATATATGTACTCACGTGGTGCGTGCCGTA
GTCCTGAGACCATTGACCACGCGCCTCGGTCGAGACGGAGCAGTGGCCAA
ACTGCACTGGAAAAATGCAGCCACGCTTTCTTGTGTCCTTCATGTGTGTT
GCGTGTGTGCGTATGCGCGTGTGCATGCTTTTGACCCCACGAGGACGAGC
CCGACCGCAGCCACCACCCCCATGCAACAGCCATGCGAGCAGTCCACGCA
GCATTGCTGACAGTGTTTTGCAAGAAGATGAACAAGCGAGTGGGAAAGAA
GAGGTGTCCCTACTTACGCGAGTTCAGGGCGCCACCCCCGGAATCCCGCC
CTTTCGCTCGCTGACAGTTATGGAGAGGAAGACAATCACATGTATGTGAT
GGCCGCAAACGACAGTTGCGAAGGGGCTGTGGAGCCGCCGCCGGTTGTGT
CCCCCACAGCGGAGCGGAATAGGACGCCCCCCGTCGTCACCAGTGATGGA
ATATCGATCAGTAGATAGTTATCGGGCTCGATTGATTATGTGGGTGGCGT
TACTAACTACTTGGAGCAAGTGCGGGTCAAACCATCGAATATCAACTGTC
GATAGATATATACCACTATATATCAGTACTGTCGATAAATACAGTAGGTC
GATTTGCCTAGATATTCCATCACTGGTCGTCACATGGGGCGCGTTGCCAC
CGCGTGTTGCGCGGCCGCCGGCCGCACGGCTTGTTATTTTACCCCTGGGG
TCCGTATGATCATAGGGTTTCAGTGTGTAAGCCCAATTTAGCAGGGGCAA
AAGGGTTCGCCCTGGACAGGGGCAAAGAACTCGTTGAGATGAGGCGCCGT
CTCCCCGCCCCCCTCAACCCTAAGAGGACTTGAACGGCTTGTGCTGCAAG
TACTGTACTTACTTCCGGAAGTACTTCGAAGTACTTGCTGTACCTCCAGG
TGTTCTGTACTGTACTGAACTGTCAGGATCTAACTTGGGATGAGTGTATT
CTTCCAAGTATACACTTCCGAAGTATGAGTATGCATGTGCTAGTACTCAC
GCCCAACAGTGCTTGCCGTAGTCCCGAGACCATCGTTCAAAAAGCTCGGG
TAGAGTACTGTAGTTAGGAGACTTGGGCTTCAAAGAACCCAAGTAGTTGG
GAGACTACTACAATCAGAAGCTTTGCAATATACTAGTATTTGGAGTGGTA
GATAAGCGGTGAGTTCCAGGGCCCGTGCCAAAAGGCTCGTCCCGAAACGG
GACTCAACGAAACCCTTCTTCCCCTCGCAGGGCAAAAAGAGAACGAAAAA
TAAAGAAGGAAAAGGGCGGGGTGATGAGGAAAGGGAAGAGGCGCAGGGAA
GTCTCTTGTGCACACAGTGGGGCATGCGGGTGGGGCAGGCGGGGACGAAG
CCGCACACGAACACCGAGATCACGACGTACCTGGGCGAGTGCGAGAAGAG
AAGGCGTGAGCAATTGCCACAATATATACCACGCACGAACCTCGTGACCA
CACCACGAGAGCCAACCCAATAGTACAAAGCAAACGTCACGATATGTATC
TTGTACTCATGCCAACAGTGCTTGCCGTGGTCCCGAGACCAATGACCACT
ATTGTACTGTACAACGCCGACACCGAGACGGAGCAGGCCCACTCCCTCCC
CCAGCTGAGCCAAACCCTTCCGCCGTGGGCGGAGGGGTGGCCATTTCCAT
ACCCCCTGTCCCTGACTTGCAATACAAATACTCCGTAGTTAATAGTACTC
CCACGTTTTGATTCCCCCCCCCCCCCTAGTATAAGAACATTCAATTCTTG
AACGGGACAACTAAGTACTAATACGAGAGCAATCAATCTCACACACGTGC
GATTGTACCTCGTTACAATTGATATGAATCCCCCCCCCCCCGCCGCCGGG
CATCAGGGTGAGCCCAACTGGGAGTCGACGGTGGCGCGACTGGGGCAGGC
GTTCGCGGCCGGCAGCGTCGCGGACTGGCACGTGTGCGACTGGCTGTGCG
TCAAGGTGGGGGGCAAGTTCACGTGGTACAGCAATCGTCGGAGAGATTTT
GCCCCTATGGGCCAATGTTGGGGGGCATATTGCTGGCCAGGAATGTCCTG
AATTTGTCCTGAAAGCCTTTGGACAAGTTTCCCCCGGTCCTGAGGGAGAT
TTTCCGGGTTTTCCTGCGCAAATCCGACCAGTACTCGGCGGGAAAAGTTC
TCCCGAAATTGGCATGGGGGGGCAAGATCTCTCCGACGATTGCTGTACGG
TACTTACGGGTGCCGAGGACCATTGCTGCTGTCTTCTTATCGGCAAGCAT
GTAGGCAACGTCGTCGATACTGCACCGGAGCTCAGCTGAAGGCATGTACT
CAGTAGTCGGGACTACCTGCGGCGAGACGGCGCGGGTACATGTACGCTGG
GATGTATAGTGCCTGTACTGGCAGTGTGTATGTTGCTCCGTCGACCGAGG
CGTGTGGTAAATGGTCTCGAGACTACGGCAAGCACAGCGTGAGTACATAT
ATATATATATATACGAGTACTACTTCGAAGTATGTGCATATGCATACTGC
TTTTTCCATGCTCGTCTTGCCCGCCCCCCCGCCCGCCGCCGCCGCCGCCG
GCGCCGCCCACCGCATTGCAGGTCCTGGGACACCTGGTCAAGGCCCACGG
AGAGCCCTGCGCGCAGGCCCTGTCCGGGTGGCAGCGGGCCGGTGAGTGAC
AGTGATGGAACATCTATATCAGTAGATGTTATCGGGCTCGACTGATTTTG
TGGGTGGCGTTGCTAACTACTTGGATTTAGTGTGGGTCAAACGATCGAAT
ATCGACTGTCGATAGATACATGGGTCAGTACTGTCGATAAATATAGGTTG
ATTTGCCAAGATATTCCATCACTGGTGAGTGAGTGCCGCAGACTCACGGG
GGCTCCGTAGAGCACCAGTCCGCTGCTGCTGCTGCTGCTGTGCTGTGCTG
TACGTCTGTGTACTGTACTGTATCTCTTACATGCACTGTACTTGAGTACA
GTAGTAGCTGCCACCTGACAGGGTGCCGGGGCAGCTAGTCTGGAGCAGGT
GCCACAACAGAAGCGCCCTAACCACGGGTGAGTGAGTGCTGCAGACGCAC
AAGGGCTCAGTAGGGCACAGCCCCCTGCCGCTGCACTGTATTGTACAAGT
GCGTCTGTTGGCTGTACAGTAGTAGCCGCCACCTGACAGGGGGCAGGGAC
AGCTAATGAACTACTGTATCTGCAGCAGTTGCCACAATGTGGGTACTCGT
ACATAGGTATATATATACGTAGTATACCAGTATATGGCAACTTACCGGTA
CTGCACACTGATGAAAAGTAGATGGAGAATTGGTTGGTGACAGACAAGAC
AGTGTCCAATAGGACGCGTGGCCAACGGCTTTGGCTACAGCTGGCCAGCG
ATCCATGAGAAGGAGCAGAGACGAGGATCGTTCGGGTCCAGGGCATGCAC
AGCGACGTGAGTACACACACAGTACCAAGACATTGAACCACTGCTCACTC
GGTTGTTTTCAGTTTACCCATGGGTTTCCCCAATCCTTGCCCCCCCCCCC
TCCTTGTTTTTAGTTCTTTGATGTGATAATCACTAGTACGAGAACAATCA
ATTCTTAAATGGGACAACCACTAATATGAGAACACTCAATCTCACACACG
TGCGATCGTACCTCGTTACAATTTATATGAATCACTACCCCAACCCTTGG
CAACGCGCGGCCAGGGCCCTTGTGGCAGCGGCGCGCGTCGTGCGTGGCCT
TTGTGAACCTGGCCAAGGAAGGGGATTGCGGAAACTTCCCGGGGTTCTCC
ACCATGCTGCTGCAGAACTGCCGGCAGGCAAGTGTGTGTGTGTGTGTGTG
TGCGTGTGCTTGCGTGTGTGTGTGCGTGTGTGTGTGCATGTGTGTACGCA
TAGAGCTCTATATGAGCGTGGCTACTGTAGAGCCTCTATGTGGGCACTGT
ACTGTAGTGCCTAGCGCCTGCTTCAGACGAATTCCGTTGTCGCAGTAGCA
TACCCCCCCCGCCTTGGCGCCTACTCCTTTGTCTGTCTGTGTGTGCGTCT
GTGTTTTCCTGCGCATCTTTCCGTCTCAGCATCCCCCCGCCACAACCTAC
TGCCGCCCCATCCCTCACGCCGGTGGGCGAAGATGGGCGTCCCGATTTAC
TGTAGGATATTGCTCCGGTCGGCATGAGGCCGATAGACGGCAACGTATTT
CGTGGCACACCACTCCTCCTCCTCCTCCTCCCCGTCCTCCTCCTCCTCCT
CCTCCTTCTCCCCTTCCCCACACAAACTTCCCCTGGCGAGCTACGGGAGG
GCCGCTGTTGTCTTTAATGACGTGGCCTGCACCTCACCCTGTGTTCTTCC
TGTTAATACTACTCGTACTACACCTCGTCCTTTGTTCCTGTTGATACTAC
ATACTACCGTAGTGATAGATCTCTGATACTGTTATGTAGTAGCAGGCGGG
GGTGGTCGTTTGAATTTATCCATTGTTTCACCGCCGTCCTATGATAGTTG
AGGACGCCTCCAAGCCCCACCCACCGCTCTCCCTCGCTCCCTCTCTCCCT
TCCTCCCTCGCTCCCTCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCT
CCCTCCCTGCCTCCCTCCTCCCTCTCTCCCTCTCCCTCGCTGCCTCTCTC
CCTCCCCCCCTCCCTGCCACCCTCCCCCCctCCCCCCCTCCCTCCCCCCC
CACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCCTCCCCCTCCC
TCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCC
CCCTCCCTCCCCCTACCCGCCCTCCCTCCCCCGCGGTGCACAGCTGGTCT
CGGCCGGGCCCGGCGAGCGGTTTGCGCAGACGGGTGCGGGCTGGGTCCTG
CGGGAACTGAGCCGGGCGGAGCGGGCCAAGGTGGTGCAACTCCTGGAGGC
GTGCGCGGCCGAGGGCCTGCTGTCGGCGGAGGGCATGCGGTACGCCACGG
GTGAGTATTTGTACAGCTTGTTTGGCCTAAGTACTGAAGTCGAGTACTTC
TACTAGTGTAGCACGCGTGCACTACTACTGTAGTATGTACTGAGAAAATA
CTCAGTATGTCCGAAACAGTACACACTACTGTACTGCACATACAGTCTGC
TCCGTCTCGACCGAGGCGCGCGGTCAATGGTCTCGGGACTACGGCAAGCA
TCACGTGAGTACATACGAGTATATACAGTGCTGCAGCGAAAGAAGGGCTT
CCGGGTGGGCGTACTGCTGAAGTACTGGGTGAGTCTGTACTGGCGAAATA
GTAAACACTACAGTACTGTACTGCACATACGAGTAAAGTGCTGCAGCGAA
AGGACGGGCTTCCGGGTGGGCGTACTGCTGAAGTACTGGGTGAGTCCGTA
TTGGCAAAACAGTAAACACTACTGTTGCTGCAGCGAAAGGAAGGGCTTCC
GGGTGGGCATACTACTGAAGTGCTTCGAAGTACTTCCAAGTACTCGGTGA
CTCCGTATTGGCGAAATAGTAAACACTACTGTACTGCGCATAAGTGCAGT
GCCCCAGCGAAAGGAAGGGCTATCCGGGTGGGTGCCCCTAGCCCGTGCAA
GATTTGAGTAGGGACACCTCTGAGCTCTTTTTCCCCCCCACTACTGTACA
GTGCTGTGCTTAGCTTGTCTGCCTCACCTGCGAAGAACTACTGTACTGTA
CTGTACTCGGGTGTCTTGAAACGAAGTGCTCACCGCGCGCCGCCGTCGCG
CGGGTCCGACTCGTCCGCAATGTGGCCGCCACCGGCAGAGAAAATGGGCT
CGAGCGAGCAGAAACGTCTCCAGGGCAAGCTGAAGCTGGGCGAGCAAAGG
ATTTCTTCGAGAAGTGCTAGTAGTAGTACGAGTAATGATGAGAAGAAGAG
CCCGCCGCCACGGGGCAAGGACCAGCACGACTCCAAGGCCACGAGCAGGG
GCAGGGGCAGCGGCAAGGGCAAGAAGGGTGGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:594219..601103+

>mRNA_S-ischiensis_contig9.20466.1 ID=mRNA_S-ischiensis_contig9.20466.1|Name=mRNA_S-ischiensis_contig9.20466.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1848bp|location=Sequence derived from alignment at S-ischiensis_contig9:594219..601103+ (Schizocladia ischiensis KU_0333)
ATGGCCCCCCAGCTGCGGCAGGCAGTTCTCTCTATACAGGGGCGGTTGGC
GGCGGTGGCAGACGCAAAGACTCGCGCGTGGTGGACAAACTACGTCAAGG
GGGCGAATTTCCGTGGCGTCAACATGGCAGATGGCCCCCCAGCTGCGGCA
GGCAGTTCTCTCTATACAGGGGCGGTTGGCGGCGGTGGCAGACGCAAAGA
CTCGCGCGTGGTGGACAAACTACGTCAAGGGGGCGAATTTCCGTGGCGTC
AACATGGCAGGTGTGCGGAAAGTGGTCCACACTGCGCAGAAGGACCTCGC
GCTGGAGACCTGGACACCCGCCGCCCGCCTGGACTTGTGCATGGCACTCC
TTGGCGAGACCATGTGTGCGGAAAGTGGTCCACACTGCGCAGAAGGACCT
CGCGCTGGAGACCTGGACACCCGCCGCCCGCCTGGACTTGTGCATGGCAC
TCCTTGGCGAGACCATGACGGAGGACAAAATGGCCGCAATTCTGTACATG
CAAGAGGTCTTGCTTCCGCAGGACGGAGGACAAAATGGCCGCAATTCTGT
ACATGCAAGAGGTCTTGCTTCCGCAGGGTGAGCCCAACTGGGAGTCGACG
GTGGCGCGACTGGGGCAGGCGTTCGCGGCCGGCAGCGTCGCGGACTGGCA
CGTGTGCGACTGGCTGTGCGTCAAGGGTGAGCCCAACTGGGAGTCGACGG
TGGCGCGACTGGGGCAGGCGTTCGCGGCCGGCAGCGTCGCGGACTGGCAC
GTGTGCGACTGGCTGTGCGTCAAGGTCCTGGGACACCTGGTCAAGGCCCA
CGGAGAGCCCTGCGCGCAGGCCCTGTCCGGGTGGCAGCGGGCCGGTCCTG
GGACACCTGGTCAAGGCCCACGGAGAGCCCTGCGCGCAGGCCCTGTCCGG
GTGGCAGCGGGCCGGGCCCTTGTGGCAGCGGCGCGCGTCGTGCGTGGCCT
TTGTGAACCTGGCCAAGGAAGGGGATTGCGGAAACTTCCCGGGGTTCTCC
ACCATGCTGCTGCAGAACTGCCGGCAGGGCCCTTGTGGCAGCGGCGCGCG
TCGTGCGTGGCCTTTGTGAACCTGGCCAAGGAAGGGGATTGCGGAAACTT
CCCGGGGTTCTCCACCATGCTGCTGCAGAACTGCCGGCAGCTGGTCTCGG
CCGGGCCCGGCGAGCGGTTTGCGCAGACGGGTGCGGGCTGGGTCCTGCGG
GAACTGAGCCGGGCGGAGCGGGCCAAGGTGGTGCAACTCCTGGAGGCGTG
CGCGGCCGAGGGCCTGCTGTCGGCGGAGGGCATGCGGTACGCCACGGCTG
GTCTCGGCCGGGCCCGGCGAGCGGTTTGCGCAGACGGGTGCGGGCTGGGT
CCTGCGGGAACTGAGCCGGGCGGAGCGGGCCAAGGTGGTGCAACTCCTGG
AGGCGTGCGCGGCCGAGGGCCTGCTGTCGGCGGAGGGCATGCGGTACGCC
ACGGAGAAAATGGGCTCGAGCGAGCAGAAACGTCTCCAGGGCAAGCTGAA
GCTGGGCGAGCAAAGGATTTCTTCGAGAAGTGCTAGTAGTAGTACGAGTA
ATGATGAGAAGAAGAGCCCGCCGCCACGGGGCAAGGACCAGCACGACTCC
AAGGCCACGAGCAGGGGCAGGGGCAGCGGCAAGGGCAAGAAGGGTGGCGG
CAGAAAATGGGCTCGAGCGAGCAGAAACGTCTCCAGGGCAAGCTGAAGCT
GGGCGAGCAAAGGATTTCTTCGAGAAGTGCTAGTAGTAGTACGAGTAATG
ATGAGAAGAAGAGCCCGCCGCCACGGGGCAAGGACCAGCACGACTCCAAG
GCCACGAGCAGGGGCAGGGGCAGCGGCAAGGGCAAGAAGGGTGGCGGC
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