mRNA_S-ischiensis_contig9.20457.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20457.1
Unique NamemRNA_S-ischiensis_contig9.20457.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:528205..531833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size794
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20457.1prot_S-ischiensis_contig9.20457.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 528205..531677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.224082-CDS-S-ischiensis_contig9:528204..5283161622817364.224082-CDS-S-ischiensis_contig9:528204..528316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528205..528316 -
1695741058.8021972-CDS-S-ischiensis_contig9:528204..5283161695741058.8021972-CDS-S-ischiensis_contig9:528204..528316Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528205..528316 -
1622817364.235741-CDS-S-ischiensis_contig9:528990..5291281622817364.235741-CDS-S-ischiensis_contig9:528990..529128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528991..529128 -
1695741058.8117285-CDS-S-ischiensis_contig9:528990..5291281695741058.8117285-CDS-S-ischiensis_contig9:528990..529128Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 528991..529128 -
1622817364.2491975-CDS-S-ischiensis_contig9:530688..5307981622817364.2491975-CDS-S-ischiensis_contig9:530688..530798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 530689..530798 -
1695741058.8218784-CDS-S-ischiensis_contig9:530688..5307981695741058.8218784-CDS-S-ischiensis_contig9:530688..530798Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 530689..530798 -
1622817364.259904-CDS-S-ischiensis_contig9:531401..5316771622817364.259904-CDS-S-ischiensis_contig9:531401..531677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 531402..531677 -
1695741058.833815-CDS-S-ischiensis_contig9:531401..5316771695741058.833815-CDS-S-ischiensis_contig9:531401..531677Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 531402..531677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.2709484-UTR-S-ischiensis_contig9:531677..5318331622817364.2709484-UTR-S-ischiensis_contig9:531677..531833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 531678..531833 -
1695741058.844056-UTR-S-ischiensis_contig9:531677..5318331695741058.844056-UTR-S-ischiensis_contig9:531677..531833Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 531678..531833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20457.1

>prot_S-ischiensis_contig9.20457.1 ID=prot_S-ischiensis_contig9.20457.1|Name=mRNA_S-ischiensis_contig9.20457.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=212bp
MLALRSAKRPRREESSPAHQYPSPWAALPNELLGQPRAQVGGDIARPAQG
GTGNTRCQPLACMILDVTTPGPPGSTYSREIALWGVTASAEKVCLRVQHF
KYYFFFPAPEPAATAPSDLTAAPWAKEARSRTCGAVRHLLDRGLRGRWGS
GAIAGVYLEERRPIMFYRPQKDTYSFLRVELSFYCPALKKDAVRILRSLA
TGGEVAVPGAAG
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mRNA from alignment at S-ischiensis_contig9:528205..531833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20457.1 ID=mRNA_S-ischiensis_contig9.20457.1|Name=mRNA_S-ischiensis_contig9.20457.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3629bp|location=Sequence derived from alignment at S-ischiensis_contig9:528205..531833- (Schizocladia ischiensis KU_0333)
GTTCAGTTCATGGTCCTTCGCGTTTGCGTGCCTGATCGTGACGGTCGGGG
TGATCCTGCCCCTCGTTCTTATGGTCGCAAGGAGCCAAAAGACGCTCTTT
AAGTCTCTCAGGCGGGACGCCGACTGAGAACGGCTGCGTCGCCCACGGCG
CCTGGCATGCTCGCCCTCCGGTCCGCCAAGCGCCCCCGGCGGGAGGAGAG
CTCGCCCGCTCACCAGTACCCGTCGCCATGGGCCGCCTTGCCGAACGAGT
TGCTTGGGCAGCCTCGCGCACAAGTGGGTGGCGACATCGCAAGGCCGGCC
CAAGGTGGAACAGGCAACACACGTTGCCAACCTCTCGCTTGCATGATCCT
GGACGTGACGACCCCGGGCCCGCCGGGCTCGACTTACTCGAGGGAGATTG
CGCTGTGGGGAGTCACGGCCTCTGCCGAAAAGGTGAACACATGCTCGGTT
GCATGTCTCTCGTTGAGAGCAAGTGGCCCGCAAGCTTGCAGTATTACTCG
TACAGTACTTGAGAACAAATTAGGGGTAGCAGTTCGGCACAGAATGCAAC
TGTATCTGTCCATGATCGTCATGGATAATACCTGGCGACGGTAGGCCTTG
GTGGCGAGCACTTGCGAGGTTGGCGCGTGCTTGCACTAGGAGGGGACCCC
GGCATCTGGCTCGTCTTCCGGCATTGTGGGAGACGGTGGCGGGGTGCTAT
GGGGAGCGGTTGAGACTGCTCTTTTTTGCTGCAAGGTATGGATATACTCG
TAAGAGATCGTGTCCAGCAGCTCTGGTTTCCACACTGGCGCAGGGGAGAG
TGCAACTAAGGCGCACTGTACAGTGCTGTAGTGTACAGTACTTGTAGCAA
GCACAGTGCCACAGGCAACACAGTGTATATAACACGTTGTCAGTTGAACC
TAACTTTGGCATACCGAAGGGTATCTAAGTACAAGTGGTGCGATGTGATT
GGTTTGAAGTGATGGGTACTCTAGACTCTCACACTCTAAAGGACTGTGTT
TTGACATCACATCACATCATATCACATCGCGACAGGTGTGCCTACGGGTT
CAACACTTCAAGTACTACTTCTTCTTCCCTGCCCCGGAGCCTGCAGCCAC
GGCCCCGTCAGATCTCACGGCGGCACCATGGGCTAAAGAAGCCAGGTACA
GTACTGTGCAGTACTTAACCCTTTTACCCCTGGTAAATTGGAGTTACACA
CTGAAGCCCTATGATTTATTGGACCCCAGGGGTAAAAGGGTTAAGTCATA
AGCCAGCGTTCTCTCCCCGAAAGAGTCCAGCTGCACACTTAACTACTACT
ATGTACGTTTTCCTGGAATTTGCCGTATGTACTTCGAAGTCGGTGGTACA
GCTGAACGTGCAAGCAGTTCTTTGGTCTGCTGTAGTGCTAGTTGCAGCAA
ATAGCACAGTAGTAGGAACAGAAAGAACACAGGGCGAGGTGCAGGCCACA
TCACTAAAGACCTCAACAGTGGCCTTTCCTTAGCTCGCCAGGGCAGGTTT
GTGTCAAGTAGCTCTAGCACTTTAGTAGTAGTAGTAGTAGTAGTAGTACT
GTAGTAGTAGCATCACCAGCAACAACAACAGTAGTAATGCGTAGCAGTTG
TGTATGTGTACCTCAGGTGCGACCAAATCCGACCAGCCAACCGTGCAATT
TGAAGTAGGTGTACTACCGATAACTTAAACCATCCGGTAGGGTGTGGGGC
TCACAAGGCCCGGTCAGGTGATGTGATGTGATGCGCTAGAGCTAAGTATG
ATGTGTTTTGGTGTGCACTCCAATTCATGTGTTTTGGTGTGCACTCCAAT
TCACTATACGAAGTTTATCTGCACATCACACCGAAACCATGAGGTTCAGT
AGGGTGCGGAAATCACAAATGTGCAATCTGGTTCACTACATCGAAGTACA
TGCAGTCTATCTGCACATCACACCGAAACCATGAGGCGCAGTAGGGTGCG
GAGATCACAAATGTGCAATCTAGTTCACTACGTCGAAGTATATGCAGTTT
ATATGCACATCACACCGAAACCATTAGGTGCAGTAGGGTGCGGAAATCAC
AAATGTGCAATCTAGTTCACTACGTCGAAGTATATGCAGTTTAACTTATC
TGTACATCACACCGAAACCGTGAGGTGCAGGAAGGTACGGAGATCACAAG
CTCCATGCATACACTCTAATTCACTACAGTATATGAAGTTCATCTGCACA
TCACACCAAGACCATGAGGTGCAGTACAAGTGGGGTGCGGTGATCACAAA
TGTGCACTCTACTGCACTTCACTACGAACTAGATGAAGTTTATCTGCACA
TCACACCGAAACCGTGAGGTGCAGTAAGGCGCGGAGATCACAAGCACCAG
CGGGTGTCCCAGTCCGTGGGAACCAAAACAGCCCTGTCACAACACCCACG
ACTAATTATGAAATTGATGCGATTCAGGTCAAGGAATTGCAGCTGCACTC
CCATAAACAACACCCGCGACTAATTATGAAATGGATGCGATTCAGGTCGA
GGACTTGCAGCTGCACTCCCATCGACAACACCCGCGACTTTTTATGAAAT
TGATGCGATTATTCAGGTCAAGGACTTGCGGCTGCACTCCCACAAACAAC
GTCCGCGACTAATTATGAAATGGATGCGATTCAGGTCGAGGACTTGCAGC
TGCACTCCCGCAAACAACACCCGCGACTAATTTTGAAATTGATGCGATTG
TTCAGGTCAAGGACTTGCGGGGCGGTGCGGCACCTCCTGGACCGGGGGCT
GCGTGGCCGGTGGGGTTCCGGCGCCATCGCAGGCGTCTATCTGGAGGAGC
GGCGGCCCATCATGTTCTACAGGCCGCAGAAGGACACCTACAGGTAGCTT
GGGTCGTAGGTCGGTCGTGGCGGAGGTTGGGCACATTCGCCCTACTCTAT
CAATGGCCGCTACAGCTTATCGCATTCGCCGTCGCCTCTCCTTGCCCCTC
CTTCATTCGCCGCCGCCCCCGCTCGCCCCTCTTCCATTGGCCATCGTCCC
CCCTTGCCCCTCTCCCATTGGCTGCACCCCCCTCTGGCCCCTCTCTCATT
GGCTGCTGTCCCCTCTCGCCCCTCTCTCATTGACTCCCTTCTCCTCTTGC
CCCTCTCGCATTGGCCACCGCCCTCTCTCTCCCCTCACCCATTGGCCAAC
GCCCTCTCTCGCCCCGCTCACATTGGCCGCCGCCCCTCTTGCCCCTCTCT
TATTGGCAGTGATGGAATGTCTAAGCAGATAAGGCTATTTATCGACAGTA
CTAATCTATTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCGTGCCA
AAAGGCTCGTCCCGAAACGGGACTCAACGAAGCCCTTCTTTATATCTATA
GGTAGTTGATATTCGATAGTTTGACGCACACGAAACCCAAGTAGCTGGTA
ACGCCACCCACAAGAATCAGTCGAGACCGATAACTATCTACTGATCGATG
TTCCATAACTGATTCTTGGCCACCGCCCCTCTCCCAAATGTATCTCCCGT
TCGGACCCGACGAACAGCTTCCTCCGTGTGGAGCTGTCTTTCTACTGCCC
AGCGCTGAAAAAGGATGCCGTGAGGATACTCCGGTCCCTGGCCACCGGTG
GGGAGGTGGCGGTCCCGGGGGCAGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:528205..531833-

>mRNA_S-ischiensis_contig9.20457.1 ID=mRNA_S-ischiensis_contig9.20457.1|Name=mRNA_S-ischiensis_contig9.20457.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1272bp|location=Sequence derived from alignment at S-ischiensis_contig9:528205..531833- (Schizocladia ischiensis KU_0333)
ATGCTCGCCCTCCGGTCCGCCAAGCGCCCCCGGCGGGAGGAGAGCTCGCC
CGCTCACCAGTACCCGTCGCCATGGGCCGCCTTGCCGAACGAGTTGCTTG
GGCAGCCTCGCGCACAAGTGGGTGGCGACATCGCAAGGCCGGCCCAAGGT
GGAACAGGCAACACACGTTGCCAACCTCTCGCTTGCATGATCCTGGACGT
GACGACCCCGGGCCCGCCGGGCTCGACTTACTCGAGGGAGATTGCGCTGT
GGGGAGTCACGGCCTCTGCCGAAAAGATGCTCGCCCTCCGGTCCGCCAAG
CGCCCCCGGCGGGAGGAGAGCTCGCCCGCTCACCAGTACCCGTCGCCATG
GGCCGCCTTGCCGAACGAGTTGCTTGGGCAGCCTCGCGCACAAGTGGGTG
GCGACATCGCAAGGCCGGCCCAAGGTGGAACAGGCAACACACGTTGCCAA
CCTCTCGCTTGCATGATCCTGGACGTGACGACCCCGGGCCCGCCGGGCTC
GACTTACTCGAGGGAGATTGCGCTGTGGGGAGTCACGGCCTCTGCCGAAA
AGGTGTGCCTACGGGTTCAACACTTCAAGTACTACTTCTTCTTCCCTGCC
CCGGAGCCTGCAGCCACGGCCCCGTCAGATCTCACGGCGGCACCATGGGC
TAAAGAAGCCAGGTGTGCCTACGGGTTCAACACTTCAAGTACTACTTCTT
CTTCCCTGCCCCGGAGCCTGCAGCCACGGCCCCGTCAGATCTCACGGCGG
CACCATGGGCTAAAGAAGCCAGGTCAAGGACTTGCGGGGCGGTGCGGCAC
CTCCTGGACCGGGGGCTGCGTGGCCGGTGGGGTTCCGGCGCCATCGCAGG
CGTCTATCTGGAGGAGCGGCGGCCCATCATGTTCTACAGGCCGCAGAAGG
ACACCTACAGGTCAAGGACTTGCGGGGCGGTGCGGCACCTCCTGGACCGG
GGGCTGCGTGGCCGGTGGGGTTCCGGCGCCATCGCAGGCGTCTATCTGGA
GGAGCGGCGGCCCATCATGTTCTACAGGCCGCAGAAGGACACCTACAGCT
TCCTCCGTGTGGAGCTGTCTTTCTACTGCCCAGCGCTGAAAAAGGATGCC
GTGAGGATACTCCGGTCCCTGGCCACCGGTGGGGAGGTGGCGGTCCCGGG
GGCAGCGGGGCTTCCTCCGTGTGGAGCTGTCTTTCTACTGCCCAGCGCTG
AAAAAGGATGCCGTGAGGATACTCCGGTCCCTGGCCACCGGTGGGGAGGT
GGCGGTCCCGGGGGCAGCGGGG
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