mRNA_S-ischiensis_contig9.20454.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20454.1
Unique NamemRNA_S-ischiensis_contig9.20454.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: A0A177EKF3_9MICR (DNA polymerase n=1 Tax=Nematocida displodere TaxID=1805483 RepID=A0A177EKF3_9MICR)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-6
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  376 FATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKALGLSPDLRLSRHTGP 549
            F TEA +L+AW  WVV+ +DPD++ G+++ GFD  YLL R +ALGL       R T P
Sbjct:  257 FETEAELLMAWSRWVVS-IDPDVITGWNISGFDFPYLLGRAEALGLPEFKHFGRTTAP 313
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: L8HIY3_ACACA (DNA polymerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIY3_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-5
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  367 VRWFATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKALGL 513
            VR + TEA ML+AWR +V   VDPDIL G++++ FD+ YLL R + LGL
Sbjct:  257 VRCYRTEAEMLLAWRKFVEI-VDPDILTGYNIINFDIWYLLTRAQKLGL 304
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: A0A0L0DSH2_THETB (DNA polymerase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DSH2_THETB)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-5
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  364 RVRWFATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKALGL 513
            +V  F TE  +L AWR++VV E DPDIL G+++V FD+ YLL R  ALGL
Sbjct:  375 QVMSFRTERELLEAWREFVV-ETDPDILTGYNIVNFDLPYLLERAAALGL 423
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: A0A7S1HD78_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HD78_HEMAN)

HSP 1 Score: 53.5 bits (127), Expect = 3.010e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  367 VRWFATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKAL 507
            V  F +E  ML AWR++VV   DPDIL G+++VGFD+ YL+ R KAL
Sbjct:   75 VHSFDSEVEMLKAWREFVVA-TDPDILTGYNIVGFDIPYLINRAKAL 120
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: A0A6G6XPA9_9VIRU (DNA-directed DNA polymerase n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XPA9_9VIRU)

HSP 1 Score: 53.9 bits (128), Expect = 5.120e-5
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  367 VRWFATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKALGL 513
            V ++ TE  ML AW+ +V+T +DPDIL G+++ GFD+RY+  R + LG+
Sbjct:  457 VEYYDTEEEMLDAWK-YVITRLDPDILTGYNIFGFDMRYIWERVRELGM 504
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: L1JTX0_GUITC (DNA polymerase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JTX0_GUITC)

HSP 1 Score: 53.5 bits (127), Expect = 6.960e-5
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  331 TLLAGPGLGQLRVRWFATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKAL 507
            TL +   +    V  F  E+ ML  WRD+V+   DPDIL G+++VGFD+ YL+ R KAL
Sbjct:  232 TLKSCAAISGAEVHSFEDESEMLQGWRDFVIA-CDPDILTGYNIVGFDIPYLMDRAKAL 289
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BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Match: A0A8H6YT63_9AGAR (DNA polymerase n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6YT63_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 7.990e-5
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  376 FATEASMLVAWRDWVVTEVDPDILAGFDLVGFDVRYLLARFKAL 507
            FA EA++L +W D+V  EVDPD++ G+++ GFD  YLLAR KAL
Sbjct:  271 FADEANLLQSWSDFV-QEVDPDLIIGYNITGFDFPYLLARAKAL 313
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A177EKF3_9MICR1.390e-648.28DNA polymerase n=1 Tax=Nematocida displodere TaxID... [more]
L8HIY3_ACACA1.150e-555.10DNA polymerase n=1 Tax=Acanthamoeba castellanii st... [more]
A0A0L0DSH2_THETB1.590e-556.00DNA polymerase n=1 Tax=Thecamonas trahens ATCC 500... [more]
A0A7S1HD78_HEMAN3.010e-555.32Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6G6XPA9_9VIRU5.120e-546.94DNA-directed DNA polymerase n=1 Tax=Dishui Lake la... [more]
L1JTX0_GUITC6.960e-545.76DNA polymerase n=2 Tax=Guillardia theta TaxID=5552... [more]
A0A8H6YT63_9AGAR7.990e-556.82DNA polymerase n=1 Tax=Mycena venus TaxID=2733690 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:524157..525671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size601
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20454.1prot_S-ischiensis_contig9.20454.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 524157..525671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.1597226-CDS-S-ischiensis_contig9:524156..5243051622817364.1597226-CDS-S-ischiensis_contig9:524156..524305Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 524157..524305 -
1695741058.7704976-CDS-S-ischiensis_contig9:524156..5243051695741058.7704976-CDS-S-ischiensis_contig9:524156..524305Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 524157..524305 -
1622817364.1735852-CDS-S-ischiensis_contig9:524854..5249391622817364.1735852-CDS-S-ischiensis_contig9:524854..524939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 524855..524939 -
1695741058.7803078-CDS-S-ischiensis_contig9:524854..5249391695741058.7803078-CDS-S-ischiensis_contig9:524854..524939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 524855..524939 -
1622817364.1851516-CDS-S-ischiensis_contig9:525305..5256711622817364.1851516-CDS-S-ischiensis_contig9:525305..525671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 525306..525671 -
1695741058.7910588-CDS-S-ischiensis_contig9:525305..5256711695741058.7910588-CDS-S-ischiensis_contig9:525305..525671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 525306..525671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20454.1

>prot_S-ischiensis_contig9.20454.1 ID=prot_S-ischiensis_contig9.20454.1|Name=mRNA_S-ischiensis_contig9.20454.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=200bp
VPTASPGASDGTGGASGGSPSGSGIVFTTLPCSCVAPALATAPASAPATT
ASESQATSTTTTSSRAASGAWAPPMSRAQDQPQARLESPSQPQAASPLPA
VGARARVRAGTLLAGPGLGQLRVRWFATEASMLVAWRDWVVTEVDPDILA
GFDLVGFDVRYLLARFKALGLSPDLRLSRHTGPTPTPHSSSSAASPSSSS
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mRNA from alignment at S-ischiensis_contig9:524157..525671-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20454.1 ID=mRNA_S-ischiensis_contig9.20454.1|Name=mRNA_S-ischiensis_contig9.20454.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1515bp|location=Sequence derived from alignment at S-ischiensis_contig9:524157..525671- (Schizocladia ischiensis KU_0333)
GTTCCCACCGCTTCCCCGGGAGCCAGCGACGGCACCGGCGGGGCCAGCGG
CGGCAGCCCCAGCGGCTCGGGCATTGTCTTCACCACGCTTCCCTGCTCGT
GCGTGGCGCCGGCGCTGGCGACGGCCCCTGCGTCGGCCCCTGCCACGACC
GCATCTGAGTCTCAGGCCACTTCCACAACTACTACTAGTAGTAGGGCTGC
AAGTGGGGCATGGGCCCCGCCTATGTCGCGGGCTCAAGATCAGCCTCAAG
CTCGCCTGGAGTCTCCGAGTCAGCCACAGGCGGCATCACCTCTGCCTGCT
GTGGGGGCGCGGGCCCGGGTCCGGGCCGGGACGCTGCTGGCCGGGCCGGG
CTTGGGGCAGCTGCGGGTGGGTGGGTGGGTTGCTGAGGGGCTTGGCGGGG
TAGTCTATTTAGAGTGGATTGGAACAGTGCCTACTTCAAACTATATGTGT
GCTCGAGTATATGTACTCACGTTGTGCTTGCCGCAGTCCCAAGACCATTG
ACCACGCGCCTCGATCGAGTACGAGTACAGTAAGAAGTCACTACTGTTGC
AACTGTTTGACTACTGTACACCTGCACCTTGCCATGTGCCCACGCCAGAA
TCTCATGGCTTGCACCGTCCAGCACATTCGAGTGCAAGCACACACATGCA
CACACACATGCACAAACGTCCATAGCATAGTTACCTGCCCATCCGGCCGG
CCGGCTGCCCGTGTGCCTGCCCCCTGGGTCAGGTCCGGTGGTTTGCTACG
GAGGCGTCCATGCTGGTGGCCTGGAGGGACTGGGTAGTGACGGAGGTGGA
CCCGGACATTCTCGCCGGTGCGTGCGTGTGTGTATTGCAAGTACTTTTTC
GCGTTGGTGTACTCGCGACTACGCACTCGTAGCGTGCGGTGATACGCAGT
ATGCCCACCCAGGGAGTACGGGCACGGGTTGTACAGTACTGCACTAGCAG
TGCCTTGCGAGTGTGGTGCTGTGCTGTATAATGTACGGTACTGTACTGTA
CTGTGCTTATGTACTGCTCTGGCAGCTTGTGTACTTCGTACTTACTACTG
CACAGTTGCAGTGCTGTACTACTTGCAGCAGTGTACCTACAGGTGTTCAG
CACAGTGTACAGTTGTTTAGCAAAGAGCTGTGTACTGCAGTGCGGAAAGT
AGGAGTTTGTAGTACTTTGTGCTTTGCAGTAAAAGCATCAGCCAGCAGGG
TTCTCACCAAGCCGAGTGACACAACTTATTGCCCTCCCCCCTCGTCACTA
AGAGCCCTCGTCCTTACGCCTTACCGACCAACTCACAACCCCACCCCGCG
CACTCCCCCCCCCCCTTCCTCCTCCTGCTCTTCTTGTCTACCCCCTGGCC
TGGCCCACCACGTAAGGCTTTGACTTGGTGGGCTTCGATGTGCGCTATCT
CCTGGCCCGTTTCAAAGCCCTTGGTCTGTCCCCGGACCTACGCCTATCCC
GCCACACCGGTCCAACCCCGACGCCACACAGCTCCTCCTCCGCCGCGTCG
CCGTCCTCATCCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:524157..525671-

>mRNA_S-ischiensis_contig9.20454.1 ID=mRNA_S-ischiensis_contig9.20454.1|Name=mRNA_S-ischiensis_contig9.20454.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1200bp|location=Sequence derived from alignment at S-ischiensis_contig9:524157..525671- (Schizocladia ischiensis KU_0333)
GTTCCCACCGCTTCCCCGGGAGCCAGCGACGGCACCGGCGGGGCCAGCGG
CGGCAGCCCCAGCGGCTCGGGCATTGTCTTCACCACGCTTCCCTGCTCGT
GCGTGGCGCCGGCGCTGGCGACGGCCCCTGCGTCGGCCCCTGCCACGACC
GCATCTGAGTCTCAGGCCACTTCCACAACTACTACTAGTAGTAGGGCTGC
AAGTGGGGCATGGGCCCCGCCTATGTCGCGGGCTCAAGATCAGCCTCAAG
CTCGCCTGGAGTCTCCGAGTCAGCCACAGGCGGCATCACCTCTGCCTGCT
GTGGGGGCGCGGGCCCGGGTCCGGGCCGGGACGCTGCTGGCCGGGCCGGG
CTTGGGGCAGCTGCGGGTTCCCACCGCTTCCCCGGGAGCCAGCGACGGCA
CCGGCGGGGCCAGCGGCGGCAGCCCCAGCGGCTCGGGCATTGTCTTCACC
ACGCTTCCCTGCTCGTGCGTGGCGCCGGCGCTGGCGACGGCCCCTGCGTC
GGCCCCTGCCACGACCGCATCTGAGTCTCAGGCCACTTCCACAACTACTA
CTAGTAGTAGGGCTGCAAGTGGGGCATGGGCCCCGCCTATGTCGCGGGCT
CAAGATCAGCCTCAAGCTCGCCTGGAGTCTCCGAGTCAGCCACAGGCGGC
ATCACCTCTGCCTGCTGTGGGGGCGCGGGCCCGGGTCCGGGCCGGGACGC
TGCTGGCCGGGCCGGGCTTGGGGCAGCTGCGGGTCCGGTGGTTTGCTACG
GAGGCGTCCATGCTGGTGGCCTGGAGGGACTGGGTAGTGACGGAGGTGGA
CCCGGACATTCTCGCCGGTCCGGTGGTTTGCTACGGAGGCGTCCATGCTG
GTGGCCTGGAGGGACTGGGTAGTGACGGAGGTGGACCCGGACATTCTCGC
CGGCTTTGACTTGGTGGGCTTCGATGTGCGCTATCTCCTGGCCCGTTTCA
AAGCCCTTGGTCTGTCCCCGGACCTACGCCTATCCCGCCACACCGGTCCA
ACCCCGACGCCACACAGCTCCTCCTCCGCCGCGTCGCCGTCCTCATCCTC
CGCTTTGACTTGGTGGGCTTCGATGTGCGCTATCTCCTGGCCCGTTTCAA
AGCCCTTGGTCTGTCCCCGGACCTACGCCTATCCCGCCACACCGGTCCAA
CCCCGACGCCACACAGCTCCTCCTCCGCCGCGTCGCCGTCCTCATCCTCC
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