mRNA_S-ischiensis_contig9.20452.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20452.1
Unique NamemRNA_S-ischiensis_contig9.20452.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A1Y1HM97_KLENI (DNA-directed DNA polymerase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HM97_KLENI)

HSP 1 Score: 209 bits (531), Expect = 1.450e-57
Identity = 119/244 (48.77%), Postives = 155/244 (63.52%), Query Frame = 1 
Query:   52 DRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQ-DPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQAKGIIEG 780
             R+AV+ L +A  A  LL KL  +TE +E+ARVTGL L DV+Y+AQM R  SLLLR A ++G +LGG   P G     +PF+ HP E  TAG Y Q P+ +LDF SLYPS+FI  NLCYSTL+HP D+  L    V  + +P   H     FV   VR G+LP +   L+  RK A+D +A+    P+ RAVLD RQ ALK+C+NA YGFTG+ ASP+Q   LA+SCL  G   C++A  ++ G
Sbjct:  681 SRLAVYSLREAELALRLLDKLQIITETLEMARVTGLTLSDVLYKAQMIRVQSLLLRSAGKEGGLLGG--PPLGGQLSESPFLLHPKERQTAGLY-QDPVAILDFASLYPSLFIGHNLCYSTLLHPDDVAALDPTDV--YTTPTGAH-----FVRTAVRHGILPRICSALIATRKQARDRMAERDITPTERAVLDGRQKALKLCSNALYGFTGAQASPMQALPLADSCLAMGAAACKKAVELVNG 914
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A8J4AN20_9CHLO (DNA-directed DNA polymerase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AN20_9CHLO)

HSP 1 Score: 196 bits (498), Expect = 1.840e-56
Identity = 116/244 (47.54%), Postives = 150/244 (61.48%), Query Frame = 1 
Query:   34 SAAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDAL-AKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            +AA AA R+A + L +      L  +L  L EA E+ARVTGL +P VMY AQM RTWSLL R A R+ +++GG  +   L    +PF+ HP+EN TAG Y + P+  LDF SLYPS++ A+NLCY+TLVHP D+  + R +     +          FV  EVR+G+LP +L  L+  R A +  L A   D    AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL +G   CR A
Sbjct:    7 AAATAAARIASYILRRVDVVVRLTSQLATLPEAFEMARVTGLTIPQVMYNAQMIRTWSLLHRYAHRQNYIIGGRQEAGNLIE--SPFLMHPIENRTAGLY-RSPVATLDFASLYPSLYRAYNLCYTTLVHPDDVDTVGRERCGFTPT-------GHAFVKPEVRQGILPTILAALMAARAATRAKLKATRYDAIASAVLDSRQKALKITANALYGFTGAAASPLQCLPLADSCLAYGAAACRAA 240
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A8J4ALD6_9CHLO (DNA-directed DNA polymerase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ALD6_9CHLO)

HSP 1 Score: 196 bits (498), Expect = 6.930e-55
Identity = 116/244 (47.54%), Postives = 150/244 (61.48%), Query Frame = 1 
Query:   34 SAAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDAL-AKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            +AA AA R+A + L +      L  +L  L EA E+ARVTGL +P VMY AQM RTWSLL R A R+ +++GG  +   L    +PF+ HP+EN TAG Y + P+  LDF SLYPS++ A+NLCY+TLVHP D+  + R +     +          FV  EVR+G+LP +L  L+  R A +  L A   D    AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL +G   CR A
Sbjct:    7 AAATAAARIASYILRRVDVVVRLTSQLATLPEAFEMARVTGLTIPQVMYNAQMIRTWSLLHRYAHRQNYIIGGRQEAGNLIE--SPFLMHPIENRTAGLY-RSPVATLDFASLYPSLYRAYNLCYTTLVHPDDVDTVGRERCGFTPT-------GHAFVKPEVRQGILPTILAALMAARAATRAKLKATRYDAIASAVLDSRQKALKITANALYGFTGAAASPLQCLPLADSCLAYGAAACRAA 240
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A8J9S3X7_9CHLO (DNA polymerase delta catalytic subunit n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S3X7_9CHLO)

HSP 1 Score: 200 bits (508), Expect = 1.700e-54
Identity = 115/250 (46.00%), Postives = 154/250 (61.60%), Query Frame = 1 
Query:   13 TPAMAATSAAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            TPA +A   AA   R+A +   +      LLQ+L  L EA+E+ RVTGL L  V+Y AQM RTWSLLLR A+R  +++ G  +   L    +P++ HP+E    G Y Q P+V+LDF SLYPS++ A+NLCY+TL+HP D       QV++  + A        +V  E+RKG+LP +L  L+  R A + AL +   P+ +AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL  G   CR A
Sbjct:  562 TPAKSAADQAADLARLASYAADRVGVVRALLQRLATLPEAIEIGRVTGLTLGQVLYNAQMIRTWSLLLRNAQRSSYIVSG--RQDALPLSESPYLMHPIETKNNGLY-QSPVVILDFASLYPSLYRAYNLCYTTLLHPDDSSAFPPEQVTVTPTGAV-------YVKPEIRKGILPSILAALINARAATRAALKEATAPAQKAVLDSRQKALKLTANALYGFTGAQASPLQCVPLADSCLALGAQSCRSA 801
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: I0Z7G6_COCSC (DNA/RNA polymerase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z7G6_COCSC)

HSP 1 Score: 198 bits (504), Expect = 6.100e-54
Identity = 115/239 (48.12%), Postives = 149/239 (62.34%), Query Frame = 1 
Query:   46 AADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            AADRV V      RA   LLQ+L  L EA+E+ RVTGL L  V+Y AQM RTWSLLLR A+R G+++ G  +   L    +P++ HPVE    G Y Q P+ +LDF SLYPS++ A+NLCY+TL+HP D        V++  +        D +V  E+RKG+LP +L  L+  R A + AL +   P+  AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL  G   CR+A
Sbjct:  789 AADRVGV-----VRA---LLQRLATLPEAIEIGRVTGLTLGQVLYNAQMIRTWSLLLRNAQRSGYIVSG--RQDALPLSESPYLMHPVETKNVGLY-QSPVAILDFASLYPSLYRAYNLCYTTLLHPDDSNAFVPEHVTVTPT-------GDVYVKPEIRKGILPSILAALINARAATRAALKEATSPAQMAVLDSRQKALKLTANALYGFTGAQASPLQCVPLADSCLALGAQSCRRA 1009
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A0D2LK96_9CHLO (DNA-directed DNA polymerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LK96_9CHLO)

HSP 1 Score: 198 bits (503), Expect = 7.830e-54
Identity = 113/240 (47.08%), Postives = 153/240 (63.75%), Query Frame = 1 
Query:   43 AAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            AAA R+A +   +  A   L ++L  L E+ E+AR TGL +  V+Y AQM RTWSLL R A RKG+++GG    + L+   +PF+ HP+E +TA  Y Q P+ +LDF SLYPS++ A+NLCY+TLVHP DL  + R   ++  + A+       FV   +R G+LP +L  L+  R + +  L  E+DPS RAVL+ RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL  G   CR A
Sbjct:  562 AAAVRLARYTRRRVLAVRRLTERLATLPESFEMARATGLTVQQVLYNAQMIRTWSLLHRNAHRKGYIIGGKTAAQALSE--SPFLMHPIEANTAAHYRQ-PVAILDFASLYPSLYRAYNLCYTTLVHPEDLAAVGRENCTVTPTGAA-------FVKPALRSGILPDILAALMTARASTRAQLKGEKDPSQRAVLEGRQKALKLTANALYGFTGAQASPLQCVPLADSCLALGAAACRGA 791
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A8J4C0T4_9CHLO (DNA-directed DNA polymerase n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C0T4_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 5.130e-53
Identity = 114/243 (46.91%), Postives = 150/243 (61.73%), Query Frame = 1 
Query:   37 AAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDAL-AKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            AAAAA R+A + + +      L  +L  L EA E+ARVTGL +P VMY AQM RTWSLL R A R+ +++GG  +   L    +PF+ HP+EN TAG Y + P+  LDF SLYPS++ A+NLCY+TLVHP D+  + R +     +          FV   VR+G+LP +L  L+  R   +  L A + D +  AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL +G   CR A
Sbjct:  164 AAAAAARIASYVVRRVDVIVRLTSRLATLPEAFEMARVTGLTIPQVMYNAQMIRTWSLLHRNAHRQNYIIGGRQEAGNLIE--SPFLMHPIENHTAGLY-RSPVATLDFASLYPSLYRAYNLCYTTLVHPDDVDAVGRERCGFTPT-------GHAFVKPVVRQGILPTILAALMAARATTRAKLKAVKYDAAASAVLDSRQRALKITANALYGFTGAAASPLQCLPLADSCLAYGATACRAA 396
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A8J4DAF1_9CHLO (DNA-directed DNA polymerase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DAF1_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 2.940e-52
Identity = 114/243 (46.91%), Postives = 150/243 (61.73%), Query Frame = 1 
Query:   37 AAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDAL-AKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQA 762
            AAAAA R+A + + +      L  +L  L EA E+ARVTGL +P VMY AQM RTWSLL R A R+ +++GG  +   L    +PF+ HP+EN TAG Y + P+  LDF SLYPS++ A+NLCY+TLVHP D+  + R +     +          FV   VR+G+LP +L  L+  R   +  L A + D +  AVLD RQ ALK+ ANA YGFTG+ ASPLQC  LA+SCL +G   CR A
Sbjct:  619 AAAAAARIASYVVRRVDVIVRLTSRLATLPEAFEMARVTGLTIPQVMYNAQMIRTWSLLHRNAHRQNYIIGGRQEAGNLIE--SPFLMHPIENHTAGLY-RSPVATLDFASLYPSLYRAYNLCYTTLVHPDDVDAVGRERCGFTPT-------GHAFVKPVVRQGILPTILAALMAARATTRAKLKAVKYDAAASAVLDSRQRALKITANALYGFTGAAASPLQCLPLADSCLAYGATACRAA 851
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A7I4BAF9_PHYPA (DNA-directed DNA polymerase n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4BAF9_PHYPA)

HSP 1 Score: 192 bits (489), Expect = 5.990e-52
Identity = 108/241 (44.81%), Postives = 155/241 (64.32%), Query Frame = 1 
Query:   55 RVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQDPSLR-AVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQAKGII 774
            R+ ++ L +A     L+++L  + E VE+ARVTGL L DV+Y+AQM R  SLLLR A+++G++LGG      L+   +PF+ HP +N TA +Y Q P+ +LDF SLYPS+F+A+NLCY+TLVHP D   +   Q+    + A       +FV + VR+G+LP +   L+  RK A+D + +E   S   AVLD RQ ALK+C+NA YGFTG+ ASP Q   LA++CL  G   C+QA  ++
Sbjct:  612 RLLLYSLHEAEVVLKLMERLQTIPETVEMARVTGLTLSDVLYKAQMVRIQSLLLRSARKEGWLLGGTTLNGQLSE--SPFLLHPKDNHTAAFY-QDPVAILDFASLYPSLFMAYNLCYTTLVHPEDAKSIPSHQLITSLTGA-------QFVVSSVRRGVLPRICGALITARKQARDRMTQEHISSEEYAVLDGRQKALKLCSNALYGFTGASASPQQAVPLADTCLSMGAASCKQAVQLV 842
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BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Match: A0A087STD6_AUXPR (DNA-directed DNA polymerase n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087STD6_AUXPR)

HSP 1 Score: 192 bits (487), Expect = 1.040e-51
Identity = 118/241 (48.96%), Postives = 146/241 (60.58%), Query Frame = 1 
Query:   55 RVAVHGLAQARAAWLLLQKLWCLTEAVELARVTGLELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHPVENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQVSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQDPSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCRQAKGIIE 777
            R+A +   +ARA   LL  L  + + VE+ARVTGL L  V Y+AQM RT SLLLR A R+G+VL   L+   L   T  F+ HPVEN TAG Y  +P+ +LDF SLYPSI+ A NLCY+TLVHP D       Q ++  +        D FV   VRKGLLP +L  L   R A +D L      + RAVLD RQ ALK+ ANA YGFTG+  SPLQC  LA+SCL +G   CR+A   +E
Sbjct:  393 RLARYMATRARAVRALLLHLATVPDMVEMARVTGLTLGQVAYQAQMVRTHSLLLRTAGRRGYVLPARLEAGQLQEHT--FILHPVENRTAGLY-TNPVAILDFASLYPSIYRAHNLCYTTLVHPEDRGLFAEDQTTVTPT-------GDVFVKPAVRKGLLPAILAALTVARAATRDQLKAATSEAQRAVLDGRQKALKVTANALYGFTGAQTSPLQCIPLADSCLAYGAQACRRALDALE 623
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1HM97_KLENI1.450e-5748.77DNA-directed DNA polymerase n=1 Tax=Klebsormidium ... [more]
A0A8J4AN20_9CHLO1.840e-5647.54DNA-directed DNA polymerase n=1 Tax=Volvox african... [more]
A0A8J4ALD6_9CHLO6.930e-5547.54DNA-directed DNA polymerase n=1 Tax=Volvox african... [more]
A0A8J9S3X7_9CHLO1.700e-5446.00DNA polymerase delta catalytic subunit n=1 Tax=Coc... [more]
I0Z7G6_COCSC6.100e-5448.12DNA/RNA polymerase n=1 Tax=Coccomyxa subellipsoide... [more]
A0A0D2LK96_9CHLO7.830e-5447.08DNA-directed DNA polymerase n=1 Tax=Monoraphidium ... [more]
A0A8J4C0T4_9CHLO5.130e-5346.91DNA-directed DNA polymerase n=1 Tax=Volvox reticul... [more]
A0A8J4DAF1_9CHLO2.940e-5246.91DNA-directed DNA polymerase n=2 Tax=Volvox reticul... [more]
A0A7I4BAF9_PHYPA5.990e-5244.81DNA-directed DNA polymerase n=6 Tax=Physcomitrium ... [more]
A0A087STD6_AUXPR1.040e-5148.96DNA-directed DNA polymerase n=4 Tax=Auxenochlorell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:516695..523244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score201.1
Seed ortholog evalue7.1e-49
Seed eggNOG ortholog248742.XP_005651129.1
KEGG rclassRC02795
KEGG koko:K02327
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
EggNOG free text desc.DNA polymerase family B
EggNOG OGs34JAX@3041,37ZA6@33090,COG0417@1,KOG0969@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size852
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20452.1prot_S-ischiensis_contig9.20452.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 516695..523238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817378.3817039-CDS-S-ischiensis_contig9:516694..5168121622817378.3817039-CDS-S-ischiensis_contig9:516694..516812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 516695..516812 -
1695741067.9720685-CDS-S-ischiensis_contig9:516694..5168121695741067.9720685-CDS-S-ischiensis_contig9:516694..516812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 516695..516812 -
1622817378.3962557-CDS-S-ischiensis_contig9:517459..5176121622817378.3962557-CDS-S-ischiensis_contig9:517459..517612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 517460..517612 -
1695741067.9850743-CDS-S-ischiensis_contig9:517459..5176121695741067.9850743-CDS-S-ischiensis_contig9:517459..517612Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 517460..517612 -
1622817378.4071445-CDS-S-ischiensis_contig9:519404..5195291622817378.4071445-CDS-S-ischiensis_contig9:519404..519529Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 519405..519529 -
1695741067.9957435-CDS-S-ischiensis_contig9:519404..5195291695741067.9957435-CDS-S-ischiensis_contig9:519404..519529Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 519405..519529 -
1622817378.4196131-CDS-S-ischiensis_contig9:520259..5204271622817378.4196131-CDS-S-ischiensis_contig9:520259..520427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 520260..520427 -
1695741068.006678-CDS-S-ischiensis_contig9:520259..5204271695741068.006678-CDS-S-ischiensis_contig9:520259..520427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 520260..520427 -
1622817378.4312365-CDS-S-ischiensis_contig9:520929..5210281622817378.4312365-CDS-S-ischiensis_contig9:520929..521028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 520930..521028 -
1695741068.0173965-CDS-S-ischiensis_contig9:520929..5210281695741068.0173965-CDS-S-ischiensis_contig9:520929..521028Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 520930..521028 -
1622817378.442838-CDS-S-ischiensis_contig9:522760..5228681622817378.442838-CDS-S-ischiensis_contig9:522760..522868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 522761..522868 -
1695741068.0280223-CDS-S-ischiensis_contig9:522760..5228681695741068.0280223-CDS-S-ischiensis_contig9:522760..522868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 522761..522868 -
1622817378.4539137-CDS-S-ischiensis_contig9:523163..5232381622817378.4539137-CDS-S-ischiensis_contig9:523163..523238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523164..523238 -
1695741068.0379174-CDS-S-ischiensis_contig9:523163..5232381695741068.0379174-CDS-S-ischiensis_contig9:523163..523238Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 523164..523238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817378.4686425-UTR-S-ischiensis_contig9:523238..5232441622817378.4686425-UTR-S-ischiensis_contig9:523238..523244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 523239..523244 -
1695741068.0579696-UTR-S-ischiensis_contig9:523238..5232441695741068.0579696-UTR-S-ischiensis_contig9:523238..523244Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 523239..523244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20452.1

>prot_S-ischiensis_contig9.20452.1 ID=prot_S-ischiensis_contig9.20452.1|Name=mRNA_S-ischiensis_contig9.20452.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=282bp
MATPAMAATSAAAAADRVAVHGLAQARAAWLLLQKLWCLTEAVELARVTG
LELPDVMYRAQMARTWSLLLRVAKRKGFVLGGGLQPRGLAPDTTPFMYHP
VENSTAGWYGQHPMVVLDFVSLYPSIFIAFNLCYSTLVHPSDLPGLQRRQ
VSMHASPASKHLQSDRFVSAEVRKGLLPLVLEGLLRQRKAAKDALAKEQD
PSLRAVLDCRQGALKMCANAAYGFTGSDASPLQCTALAESCLRFGNFLCR
QAKGIIEGWAQVPPPPSSGPPPPPPPPPPPQE
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mRNA from alignment at S-ischiensis_contig9:516695..523244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20452.1 ID=mRNA_S-ischiensis_contig9.20452.1|Name=mRNA_S-ischiensis_contig9.20452.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6550bp|location=Sequence derived from alignment at S-ischiensis_contig9:516695..523244- (Schizocladia ischiensis KU_0333)
GGCGGAATGGCCACGCCTGCGATGGCTGCCACTTCTGCCGCCGCTGCCGC
CGACCGGGTGGCGGTGCATGGATTGGCGCAGGCAAGCAGTGATGGAATAT
CCGAACAAAATCGACCTATTTATCGACAGTAGGTACTGATCTATATGTCT
ATCGGTAGTCGATATTCGATAGTTTGACCCACGCTAAATCCAAGTAGTGT
TTGGCATGAAGATAAAAAGCGAGTGGGAAAGAAGAGGTGTTCATACTTAC
GCGAGTTCAGGGCCCCCCATCCCCGGAAGCCCGTCTTTTCACTCGCCTTC
CAAGTAGTTAGAAACGCCACCCACAAAATCAGTCGAGCCCTATAGCTATC
TACTGATCGATATCCCGTTACTGCAGGCGAGGGCGGCGTGGTTGCTGTTG
CAGAAGCTATGGTGCTTGACGGAGGCGGTGGAACTGGCGCGTGTTACGGG
GCTGGAGCTGCCCGACGTCATGTACCGGGCGCAGGTCAGATGCCGTCTGG
CCAAATACTAGTTGTCCACGATCTGGCGAGGGTGGGCGTCCGGGCACCCA
ACTAGTTGTAGACAATCTGGCGAGGGTAGTTGTCCGGGCACCCAACTAGT
TGTAGACGATCTGGCGAGGTAGTTGTCCAGGCACCCAACTAGTTGTAGAC
GATCTGGCGAGGGTAGTTGTCCGGGCACCCAACTAGTTGTAGACGATCTG
GCGAGGGTAGTTGTCCCGGGACCAACTAGTTGTAGACGATCTGGGGTAGT
TGTCCCGGGACCAACTAGTTGTAGACGATCTGGCGAGGGTAGTTGTCCCG
GGACCAACTAGTCGAAGACGATATGGTGAGGGTAGTTGTCCCGGGACCAA
CTAGTTGCCCACGATTTTGGCCAATCAGTTGTGTTTGTCCGGCGTGTTAG
TATTTGGCGGAGAGGCGTTGGTCCCGCGAGGTACTTCGAAGTACATCGCG
AGCTGGTTTGCCGATGCTCGCAACCGCCGCCGCTGTAACTGTGTAGCTCG
AGTACAGTGTAGTACAGTAGCACAGTCTGTGCTGTACTGCACTGTACTGC
AACGTTCTGTACTGCGCAGTACTGTACTGTACTGCACGGCACTGTCCTGT
CCTGTCCTGCACTGCACTGTACTGCACTGTGCTGTACGGTATGGTACAGT
ACTGTACTACAGAGTGCAGGACAGTCGGGTACAGCGCTGCTGTAAATACA
GTGGTAGACGGATTTTTATTGTTGCAGATGTACTTTGGATCGGTGTGCAA
CCAGTGCCTGGCTGGCGAGAACCCCGTATGCTCCGTCCCGGCGAAATTGT
AGGGATGCATGGCCAATGGCCGAACGGCTACTTGTACCCTGCCGGGGCTG
GCCGGCGGTCCAGCAAGTAGTATGCTACTGTACTGTGATGTGACGTGATG
TGATGCGTACTCTAAATGTACAGTAGTTTGACATCACATCACATCACATC
ACGTCACACCACATGGCGGTCCAGCGAGTAGTATACAGGGTTAGTGGTGT
GAATGGGACGGGGTGTACTGGTAGTAATATCAACCCTGTCCGACATAACC
GTGAGTACGAGAGTACTGCGAAGCATGCGTAGAGCTCCTTAGGATGCGAC
ACGCAACCCCTCTGGTGCCGTAAGCCGCATGACTTGCAGTCGCGGCACTG
ATGTGCTTCGAAGCACTTTATGACACGATCGCAAACCTGTACTCAACTGC
AGCAGCTGATGTACGTTACGACACCATCACAAAACTGTACTTCCAAGTAC
TTCGCTGCAGCACTGATGTAGTTTACGACACCGTCACAAACCTGTAACTG
CAGCACGGATGTACTTTACCACACCATCACAAAGCTGTAGCTGCAGCACT
GATGTACGAAGTACTTTCCGACACCATCAAGACAAGCCAATGAGTACATG
TACTTCGAAGTATCACAAACCTGTAACTGTCGGCGAAACTGTCGCGCCGG
CCGTTACACAGACAGTGGTGGAATATCTAAGCAAATCAACCTGTTTATCG
ACAGTACTGATCTATTTTGAGTGGTCGATATGCGGCGAGTTCCAGGCCCC
GTGCCAAAAGGCTCGTCCCAAAACAGGACTCAACTGATCTACAATCTATC
GATAGTCGATATTCGATAGTTTGACCCACACTTAATCCAAGTAGTTGGTA
GCGCCACCCACAAAGTCAGTCGAGCCCGATACTATCTACTGATCGATGTT
CCATCACTGTACACAGATGGCCCGAACGTGGAGCCTGCTGCTGCGCGTGG
CGAAACGCAAGGGGTTTGTGCTGGGCGGGGGCCTGCAGCCCAGGGGCCTC
GCCCCCGACACCACGGTGAGCATAGCATGTAGGTACTTCCTTGAGCATAG
CATGTACTCGTAGGTACTTACTGTGAGCATAGGTAGCATGTAGGTCTTGC
TGTGCCTGTTAGTATAGTGAGCCGGTTTCGTCGGCCGCGGCCCGGGCCCT
GTTTAAAACACTGTAGTTTGTGCCGCCGGTCTTAAATGGGACCACTACTA
ATACAAGAACAGTCAATCGCACACACGTGTTCCTCTCGCTTGTGCAATTG
TACTATGTACCAAGCACTTGCTCCACACCACACCTTGTAAACATACTTCT
ACCCGTTGAACTCCTCTTGCCCCCCCACTGCAGCCCTTCCTGTACCACCC
CAGGGAGACTCCATGGCGGGGTGGTACGGGCAGCACCCGGTGGCGGTCCT
GGACTTTGCCTCCCTCTGCCCCTCCATCTTCTGAGGTCGTCTCGCTTGTG
CAATTGTACCTCCAAGCACGTGCTACCGCACCATGCAAAAAAACTCCTCT
TGCCCCCGCTGCTGCAGCCCTTCATGTACCACCCCGTCGAGAACTCGACG
GCGGGGTGGTACGGGCAGCACCCGATGGTGGTCCTGGACTTTGTCTCCCT
CTACCCCTCCATCTTCATCGCCTTCAACCTCTGCTACTCCACGCTGGTGC
ACCCCTCCGACCTACCGGGCCTGCAGCGGCGTCAGGTACTGCAGCAGTGA
TGGGATATCAGTAGATGGCTATCGGGCTTGACTGATTTTGTGGGTGGCGC
TACTAGTTAATTCTACTTCTAAGTACTTGGATTTAGTGTGGGTCACAGTG
TCGAATATTGGCTATCGATAGATGTGTAGATCAGTACTGTCGATAAATAG
GTTGATTTGCTTCGATACACTACGTAGCAATACCTATGGTACTCCACGCT
GGCGCACCCCTCCGACCTACCGGGCCTGCAGCGGCGTCAGGTCTGCAGCC
GTGATGGAATATCGATCAGTAGATAGTTTTTTGCAAGAACATAAAAAGCG
ATTGGGAGAGAGGAGGTGTTCCTACTTACGCGAGTTCAGGGCCCCCTCCC
CGGAAGCCCGTCAGTAGATAGTTATGGGTCTCGACTGATTTTGTGGGTGG
CGTTGCTAACTGCTTGGGTTTGGTGTGGGTCAAACTATCGAATATCGACT
ATCGATAGATATATAGGTGAGTGCTGTCAATAAATAGGTTGATGTGCTTA
GATATTCCATCACTGCTGGGGCCTACACGATGCATGTCGGCGTTGCTGAG
TTCAGCAGTGTGCACACACACCCACGCGCGTGCACACACACACACACACA
CACACATAAAGGGGCAACAGCGAGCACCATGCAAGCGCCACTCACTCGCC
TTGCACACCCACCCATCAACACATGCGCGCTAAGACACATAGCACACACA
CGTGGGATGGTGCAGGTGAGCATGCACGCCTCCCCAGCCAGCAAACACCT
CCAGTCGGACCGCTTTGTGTCGGCCGAGGTGCGCAAGGGGCTGCTGCCGC
TGGTGCTGGAGGGGCTTCTCAGGCAGCGCAAGGCCGCCAAGTGAGACAAA
TGGTGGTGGTGGTGGTGGTGGTAGTAGTAGTAGTGGTAGTAGTGGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTGGTGGTAGTGGTGGTGGTGGTGGT
AGTAGTAGTAGTAGAGTCAGTAGTGGTGGTAGTAGTAATAGTAGCAGTAG
TAGTTTTAGTGGTGGTGGTGGTAGTAGTAGTAGTAGTAGCAGAGTGGACT
TGGAAGAGGGAAGCTACTTCCGATGGCAGTGTAGAGTAGTAAGGTGCTGC
TGCCGCTGATGCTGGAGGGGCTGCTCAGGCAACGCAAGGCCGCCAAGTGA
GACAAGTGGTAGCAAGTACTAGTGTGGTGTAGTAGCAGTAGTAGTAGTAG
AGTGGACTTGAAAGAGAGAAGTCTTCTGATTGCAGTGTAGAGTGGCAAGG
GGCTGCTGCCGCTGGTGCTGGAGGGGCTGCTCAGGCAGCGCAAGGCCGCC
AAGTGAGACAAGTACCTAGTCAGTGCGAGTACCGTATTGTACTTCGAAGG
ACTGTGTACTGGTAGGTCCAGTAGTACTTACAGTAGTTCACACGCTCAGG
CAGCGCAACGCCGCCAAGTGAGACAAGTACTCAGTGTGAGGACTGTACTG
TGTACTGGTAGGTACAGAGGTCCCTACAGTAGTTCATACGACTACTGTAC
AGTAGAGCATAGTACAACTGTAGTGAAATGAGTACTCAGTGCGAGTACTG
TATTGTACCGGGTACTGGTAGGTACAGTAGTACATACAGTAGTTCACACG
ACTACTGTAGAGTAGAGCACGGTACAAATGTAGTGACGCGAGTGTTCAGT
GCGAGTACTGTACTGTGTCCTGGTAGGTACAGTAGTGCATACAGTAGTTC
ATGCGACTACTGCACAGTAGAGCACGGTGCAACTGTAGTTGGTAGTAGCG
GTGGCGTTCTGTGCGTAGGTGTGCTTGTAATGGCGACACTCGGCATTTGC
CCGCGTGCACGGAATGGTCTCCCTCGGGCCTACGGCAAGCACAGCGCGAG
CCCCAAGTACCTAGTACACATGCTTCGGACGTATTTACTTCGAAGTATGT
TTATCAGTCGACAACGCCTGGCACGCCGAGTGTGTCTTACGGTAGCACCT
GCTATACTGGGTACTCGTACAATATTCAAAGCAGACAAACAGCTGTAGAG
TGCCCCAAAGTACAGTAGGGCACTACCAGACTTGCAGTACTCAACGTACT
TCTACAGTACTGTTATACGTACAGTAGCACCACAGTCTACTAAGCACTGT
ACTCTCGAGTCTTTCCAGAAGCATGGTGAGGAACAGCACAGGGAGTAGTG
CAGTGTATGTCTTATGTACGGTACTCACACGCAACAGTGCTTGCCGTAGT
CCCGGAGCACACACTCACAGACACACACACCACGCACACGCACACCCACA
TTATCTCACACACACACTCTCTCCGTCTCTCTCTCTCTCTCACACACACA
CACAGGGACACCCACACCCGCACCCACACCCACATTGTCTCACGAACATA
ATCGCTCACTCTCTCTCTATATATATACATATCACACACGCACAGTGAAC
ACCCATACGCACACCCACACCCACATTCTCACAAACACACTCACTCACTC
TATTCTCACAAACACACTTCCTCCCTCTCTCTCCATCTCTTTCTCTCTCT
CTCTCTCTCTCACACACACAGGGACGCCCTTGCCAAGGAGCAGGATCCGA
CACACTCACAGACACACACCCACTACGCACACGCACACCCACATTATCTC
ACAAACACTCTCTCTCTCACACACACACACAGGGACGCCCTGGCCAAGGA
GCAGGACCCGAGCCTCCGCGCGGTCCTGGACTGCCGGCAGGGGGCACTCA
AGATGTGCGCCAACGCGGCGTACGGTTTCACCGGCTCCGACGCCAGCCCG
CTGCAGTGCACCGCCTTGGCTGAGTCGTGTCTCCGGTGTGTGTGTGTGTG
CGTGTGCGTGTGTGTGTGTGTGCACATGTGTGCACATGTGTGCGCGTGAG
TTTATAGTCATGTGTGTGTGTGGACTACGTTGTGCTTACCATAGTCCCGA
GACCATTGCCTACGCGCCTCAACCGAGGCACGGTGTGTGTGCGTGTGCTT
CTTGAAGTTGTCAAATACTCTTTGAGACGAGATGACAACCTCTCTCAATT
GCGAGAGCTACCTAGCTTGGCGCAGTACACGGACTGTGTGACTGTTTGAC
TGTCTCGACTGTCAATCAGGTTTGGGAACTTCCTCTGTCTGACTACCTCG
ACTGTCTTGTTGACTGTCAGTTCAGGTTTGGGAACTTCCTCTGTCTGACA
GTCTCGACTGCCTTGGCCGTCAATCAGGTTTGGGAACTTCCTCTGTCTGA
CTGTCTCGACTGTCTTGACTGTCAGTTCAGGTTTGGGAACTTCCTCTGCC
TCGACTGTCTTGACTGTCACTTCAGGTTTAGGAACTTCCTCTGTCTGACT
GTCTCGACTGTCTTGGCCGTCCATCAGGTTTGGGAACTTCCTCGGACTGT
CTCGACTGTCTTGACTGTCAATCAGGTTTGGGAACTTCCTCTGTCTGACT
GTCTCGACTGTCTTGATTGTATTGACTGTCAGGTTTGGGAACTTCCTCTG
CAGGCAGGCCAAGGGCATCATCGAGGGCTGGGCCCAAGTACCCCCCCCCC
CATCCTCCGGCCCGCCGCCTCCACCTCCACCGCCGCCACCACCACAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:516695..523244-

>mRNA_S-ischiensis_contig9.20452.1 ID=mRNA_S-ischiensis_contig9.20452.1|Name=mRNA_S-ischiensis_contig9.20452.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1692bp|location=Sequence derived from alignment at S-ischiensis_contig9:516695..523244- (Schizocladia ischiensis KU_0333)
ATGGCCACGCCTGCGATGGCTGCCACTTCTGCCGCCGCTGCCGCCGACCG
GGTGGCGGTGCATGGATTGGCGCAGATGGCCACGCCTGCGATGGCTGCCA
CTTCTGCCGCCGCTGCCGCCGACCGGGTGGCGGTGCATGGATTGGCGCAG
GCGAGGGCGGCGTGGTTGCTGTTGCAGAAGCTATGGTGCTTGACGGAGGC
GGTGGAACTGGCGCGTGTTACGGGGCTGGAGCTGCCCGACGTCATGTACC
GGGCGCAGGCGAGGGCGGCGTGGTTGCTGTTGCAGAAGCTATGGTGCTTG
ACGGAGGCGGTGGAACTGGCGCGTGTTACGGGGCTGGAGCTGCCCGACGT
CATGTACCGGGCGCAGATGGCCCGAACGTGGAGCCTGCTGCTGCGCGTGG
CGAAACGCAAGGGGTTTGTGCTGGGCGGGGGCCTGCAGCCCAGGGGCCTC
GCCCCCGACACCACGATGGCCCGAACGTGGAGCCTGCTGCTGCGCGTGGC
GAAACGCAAGGGGTTTGTGCTGGGCGGGGGCCTGCAGCCCAGGGGCCTCG
CCCCCGACACCACGCCCTTCATGTACCACCCCGTCGAGAACTCGACGGCG
GGGTGGTACGGGCAGCACCCGATGGTGGTCCTGGACTTTGTCTCCCTCTA
CCCCTCCATCTTCATCGCCTTCAACCTCTGCTACTCCACGCTGGTGCACC
CCTCCGACCTACCGGGCCTGCAGCGGCGTCAGCCCTTCATGTACCACCCC
GTCGAGAACTCGACGGCGGGGTGGTACGGGCAGCACCCGATGGTGGTCCT
GGACTTTGTCTCCCTCTACCCCTCCATCTTCATCGCCTTCAACCTCTGCT
ACTCCACGCTGGTGCACCCCTCCGACCTACCGGGCCTGCAGCGGCGTCAG
GTGAGCATGCACGCCTCCCCAGCCAGCAAACACCTCCAGTCGGACCGCTT
TGTGTCGGCCGAGGTGCGCAAGGGGCTGCTGCCGCTGGTGCTGGAGGGGC
TTCTCAGGCAGCGCAAGGCCGCCAAGTGAGCATGCACGCCTCCCCAGCCA
GCAAACACCTCCAGTCGGACCGCTTTGTGTCGGCCGAGGTGCGCAAGGGG
CTGCTGCCGCTGGTGCTGGAGGGGCTTCTCAGGCAGCGCAAGGCCGCCAA
GGACGCCCTGGCCAAGGAGCAGGACCCGAGCCTCCGCGCGGTCCTGGACT
GCCGGCAGGGGGCACTCAAGATGTGCGCCAACGCGGCGTACGGTTTCACC
GGCTCCGACGCCAGCCCGCTGCAGTGCACCGCCTTGGCTGAGTCGTGTCT
CCGGGACGCCCTGGCCAAGGAGCAGGACCCGAGCCTCCGCGCGGTCCTGG
ACTGCCGGCAGGGGGCACTCAAGATGTGCGCCAACGCGGCGTACGGTTTC
ACCGGCTCCGACGCCAGCCCGCTGCAGTGCACCGCCTTGGCTGAGTCGTG
TCTCCGGTTTGGGAACTTCCTCTGCAGGCAGGCCAAGGGCATCATCGAGG
GCTGGGCCCAAGTACCCCCCCCCCCATCCTCCGGCCCGCCGCCTCCACCT
CCACCGCCGCCACCACCACAGGAGGTTTGGGAACTTCCTCTGCAGGCAGG
CCAAGGGCATCATCGAGGGCTGGGCCCAAGTACCCCCCCCCCCATCCTCC
GGCCCGCCGCCTCCACCTCCACCGCCGCCACCACCACAGGAG
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