mRNA_S-ischiensis_contig9.20439.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20439.1
Unique NamemRNA_S-ischiensis_contig9.20439.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20439.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.240e-21
Identity = 73/179 (40.78%), Postives = 108/179 (60.34%), Query Frame = 1 
Query:   91 ERLLGRLRLLLET------DPHASQGDGSYAGGGAVAEYLSLLEEAGRWVERFGRERRDRAVGRYQEEREWRLGGLKETLRRLGTRKGAILADLEKVRRVTGSKATQIQRLQGLAKEGWAESELSLSRNTLAGLESLARRERSHMARLRAREWELEALLREVEASLEDTRKDREKCLHD 609
            E L G++RLLL        D     G G       + EY+SL+E+  R VER  R++ D  + + +  +E  LG LKE LRRL +++GAI ADL+++RR   SK  +I+ L+ LA E WAE E S+ R+TL  LE++ R+E++H++R RAR  ELEA   + EA L   ++D+ + L D
Sbjct:  614 EELAGKMRLLLRAGLSWGGDAEGDCGRGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQQRKNSKEDGLGKLKERLRRLESKRGAIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEAMIRKEKTHLSRFRARAKELEAHGVDTEALLAGMKEDKVRRLAD 792
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BLAST of mRNA_S-ischiensis_contig9.20439.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.020e-20
Identity = 70/173 (40.46%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:   91 ERLLGRLRLLLETDPHASQGDGSYAGGGAVA------EYLSLLEEAGRWVERFGRERRDRAVGRYQEEREWRLGGLKETLRRLGTRKGAILADLEKVRRVTGSKATQIQRLQGLAKEGWAESELSLSRNTLAGLESLARRERSHMARLRAREWELEALLREVEASLEDTRKDR 591
            E+L G++RLLL              GGG +       EY+SL+E+  R VER  R++ D  +   +  RE  LG LKE LRRL +++G+I ADL+++RR   SK  +I+ L+ LA E WAE E S+ R+TL  LE++ R+E++H+++ RAR  ELEA   + EA L   ++D+
Sbjct:  728 EQLAGKMRLLLRAGLSWGGNAEGDRGGGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQERKNSREDGLGKLKERLRRLESKRGSIRADLDRLRRRMVSKTDRIKTLRTLADECWAEGEPSIGRDTLDNLEAMIRKEKTHLSKFRARAKELEAHGVDTEALLAGMKEDK 900
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK20_9PHAE2.240e-2140.78Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN85_ECTSI1.020e-2040.46Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:435132..437544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size773
Cds size771
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20439.1prot_S-ischiensis_contig9.20439.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 435132..437544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.631689-CDS-S-ischiensis_contig9:435131..4354631622817377.631689-CDS-S-ischiensis_contig9:435131..435463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 435132..435463 +
1695741067.4415653-CDS-S-ischiensis_contig9:435131..4354631695741067.4415653-CDS-S-ischiensis_contig9:435131..435463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 435132..435463 +
1622817377.6440673-CDS-S-ischiensis_contig9:436319..4364551622817377.6440673-CDS-S-ischiensis_contig9:436319..436455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 436320..436455 +
1695741067.453107-CDS-S-ischiensis_contig9:436319..4364551695741067.453107-CDS-S-ischiensis_contig9:436319..436455Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 436320..436455 +
1622817377.6566844-CDS-S-ischiensis_contig9:437241..4375441622817377.6566844-CDS-S-ischiensis_contig9:437241..437544Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 437242..437544 +
1695741067.4632528-CDS-S-ischiensis_contig9:437241..4375441695741067.4632528-CDS-S-ischiensis_contig9:437241..437544Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 437242..437544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20439.1

>prot_S-ischiensis_contig9.20439.1 ID=prot_S-ischiensis_contig9.20439.1|Name=mRNA_S-ischiensis_contig9.20439.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=257bp
SLSSSSVYSGPAGKTVAAAAAAVQLEALHKERLLGRLRLLLETDPHASQG
DGSYAGGGAVAEYLSLLEEAGRWVERFGRERRDRAVGRYQEEREWRLGGL
KETLRRLGTRKGAILADLEKVRRVTGSKATQIQRLQGLAKEGWAESELSL
SRNTLAGLESLARRERSHMARLRAREWELEALLREVEASLEDTRKDREKC
LHDMDSTTTSSSKPRGAGGLGAAALGGGGRSHPPAEVLASVPEEEGGGEA
PRAGKGG
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mRNA from alignment at S-ischiensis_contig9:435132..437544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20439.1 ID=mRNA_S-ischiensis_contig9.20439.1|Name=mRNA_S-ischiensis_contig9.20439.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2413bp|location=Sequence derived from alignment at S-ischiensis_contig9:435132..437544+ (Schizocladia ischiensis KU_0333)
TCCTTGTCCTCGTCTTCGGTGTACTCGGGCCCGGCCGGGAAGACGGTGGC
GGCGGCGGCGGCGGCGGTGCAGCTAGAGGCGCTGCACAAGGAGCGCCTGC
TGGGACGGCTGCGGCTCTTGTTGGAGACGGACCCGCACGCCAGCCAAGGT
GATGGCAGTTACGCCGGGGGGGGGGCAGTGGCGGAGTACCTGTCGCTGCT
GGAGGAGGCCGGGAGATGGGTGGAGCGGTTTGGGAGGGAGCGGCGGGACC
GGGCGGTGGGGCGGTACCAGGAGGAGCGCGAGTGGCGGCTGGGGGGGCTG
AAGGAGACGCTGCGCCGCTTGGGCACCCGGAAGTGAGTTTCTTTTTCCTT
TCACGGTATCTATAGTACTACTTCGAAGAACGTCTCGATCGAGGCGCGTG
GTCAGGTCTCGGGACTACGGCAAGCACAACGCGAGTACATATATATATAT
ACTACATGTACGGCGGATGTAAGCTACCAGTGTAGACCAAGTGCTTCGAA
GTACTTTGTAGTACCTTTTTTATCTCAGGCTACAGTACGCGCTTGGCGGC
GCAGATTGATTGTTGTTCCCATGTACCGTGGTCGGTGCGACAGACCCCAC
GGCGAGGTGGAACCAACGGTACTGTGCTGTAGTGCATCCAGTGCCTGTGC
TTGTACTTGTGTGCTTGTGCCATAGTATATGTGTACGTCTACGGCTTGTC
TTGTGACATACGCTTGCGTGTGTTGCCGACAGCCCTAAGTCGAAACTTCG
GTAGCCAGTACTATATATACACTTTAAAGTACACACGCGTTCCCGCCGCC
CTCCCGCACCCCCACACGCGACAGTGGCGCCATGTTGGCCAACCTGGAGA
ATATTTTTACGCGTGGAGTCAAACAACTGTATTATAAGTAGGGACACCTC
CTCTTTCCCACTCGCTTGTTCATCTTCTTGCAAAAAAAATGTATTGTTGT
GCTTCAAAGTGTTAAAACCCCAGCTCCTGCACACGCCTCCCCGCTGCCCT
CCCGCACCCCCGCACTTGTTTGAGGCGCCATACTGGCCGACCTGGAGAAT
ACATATATATATATATACTTCGAAGTGTTTGTTTTTCCGTGCAGTCAAAC
AACTGTAGATATTGTGCTTCAAAGACCTAAACCCCAGCCCCTGCACACGC
CTCCCCGCCGCCCTCCCGCCCTACCCCACACTTGACAGAGGTGCCATACT
GGCCGACCTGGAGAAGGTGCGGCGTGTGACGGGGAGCAAGGCCACGCAGA
TTCAGCGCCTGCAGGGTCTGGCCAAGGAGGGCTGGGCGGAGTCGGAGCTC
TCCCTCTCGCGGAACACGCTCGCGGTGAGTGAGCACCACACGCGGTTGTC
GCGTGTTGTGTTGTGGTGTGAACTGGCCTACCGGATGTCGCACAAACGAA
CTATTGTAAGTAGAGCGCAAGTACAGCACATCACGTTGCTGTCAGAGTGC
TCTACACGTCACAACACGTCACGTCACATCATCACATCACATCACATCAC
ATCACATCGCATCACATAACACGTCACATCAAATCACATAACATCACATC
CACGTCGCGTAATCGTGGGAGCAGTCTTGCACCTCGAGACCGTTTCGCGG
CAGCATGTTTCCCGCTGCGGGCTGCTCTCACTCGTGTATGGTGGCTCGAT
AGGGCCATCGGCGGCTGGGTTTTCAGCCAGCGGCCAACACTTTACGGGGG
GCCGGATTCATTGTGCCAGGTCGGCCCAACCATCGACCGGGTGTTGCCAG
GCTGACCCCAACCCGCAGAGTACTTGTACTCGTATGTACTTGCTGTACAG
TACGAGTATACCACTTGCAGGTACAGCAGTACAGTACACTACATGTGAAC
CCAAACAGTGAGAGTCACGTTGCCGCTCCCCTCCCTCCCTCCCTCCCTCC
GCCCCTCCCTCCCTCCCTCCCTGCCTCCCTGCCTCCCTCCCTCCCTCCCT
CCCAGCAGTACAGTGCACTACATGTGAACCCAAACAGTGAGAGTCACGTT
GCCGCTTCCCTCCCTCCCTCCCTCTCTCACTATGAACCATAACAGGGAGA
GTCACATTGCCGCTTCCCTCCCTCCCCCCGTCCCTCCCTCCCTCCCTCCC
TCCCTCGCAGGGCCTGGAGTCCCTGGCGCGGCGGGAGCGCTCCCACATGG
CCCGCCTCCGCGCCCGGGAGTGGGAGCTCGAGGCCCTCCTCCGGGAAGTA
GAGGCCTCCCTGGAAGACACCCGGAAGGACCGGGAGAAATGCCTCCACGA
CATGGACTCCACAACGACCTCCTCGTCGAAACCCCGGGGGGCGGGCGGCC
TGGGCGCGGCGGCCCTTGGTGGGGGGGGCCGCTCGCACCCTCCTGCGGAG
GTATTGGCGAGCGTGCCTGAGGAGGAGGGGGGGGGCGAGGCCCCGAGGGC
AGGCAAAGGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:435132..437544+

>mRNA_S-ischiensis_contig9.20439.1 ID=mRNA_S-ischiensis_contig9.20439.1|Name=mRNA_S-ischiensis_contig9.20439.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1542bp|location=Sequence derived from alignment at S-ischiensis_contig9:435132..437544+ (Schizocladia ischiensis KU_0333)
TCCTTGTCCTCGTCTTCGGTGTACTCGGGCCCGGCCGGGAAGACGGTGGC
GGCGGCGGCGGCGGCGGTGCAGCTAGAGGCGCTGCACAAGGAGCGCCTGC
TGGGACGGCTGCGGCTCTTGTTGGAGACGGACCCGCACGCCAGCCAAGGT
GATGGCAGTTACGCCGGGGGGGGGGCAGTGGCGGAGTACCTGTCGCTGCT
GGAGGAGGCCGGGAGATGGGTGGAGCGGTTTGGGAGGGAGCGGCGGGACC
GGGCGGTGGGGCGGTACCAGGAGGAGCGCGAGTGGCGGCTGGGGGGGCTG
AAGGAGACGCTGCGCCGCTTGGGCACCCGGAATCCTTGTCCTCGTCTTCG
GTGTACTCGGGCCCGGCCGGGAAGACGGTGGCGGCGGCGGCGGCGGCGGT
GCAGCTAGAGGCGCTGCACAAGGAGCGCCTGCTGGGACGGCTGCGGCTCT
TGTTGGAGACGGACCCGCACGCCAGCCAAGGTGATGGCAGTTACGCCGGG
GGGGGGGCAGTGGCGGAGTACCTGTCGCTGCTGGAGGAGGCCGGGAGATG
GGTGGAGCGGTTTGGGAGGGAGCGGCGGGACCGGGCGGTGGGGCGGTACC
AGGAGGAGCGCGAGTGGCGGCTGGGGGGGCTGAAGGAGACGCTGCGCCGC
TTGGGCACCCGGAAAGGTGCCATACTGGCCGACCTGGAGAAGGTGCGGCG
TGTGACGGGGAGCAAGGCCACGCAGATTCAGCGCCTGCAGGGTCTGGCCA
AGGAGGGCTGGGCGGAGTCGGAGCTCTCCCTCTCGCGGAACACGCTCGCG
AGGTGCCATACTGGCCGACCTGGAGAAGGTGCGGCGTGTGACGGGGAGCA
AGGCCACGCAGATTCAGCGCCTGCAGGGTCTGGCCAAGGAGGGCTGGGCG
GAGTCGGAGCTCTCCCTCTCGCGGAACACGCTCGCGGGCCTGGAGTCCCT
GGCGCGGCGGGAGCGCTCCCACATGGCCCGCCTCCGCGCCCGGGAGTGGG
AGCTCGAGGCCCTCCTCCGGGAAGTAGAGGCCTCCCTGGAAGACACCCGG
AAGGACCGGGAGAAATGCCTCCACGACATGGACTCCACAACGACCTCCTC
GTCGAAACCCCGGGGGGCGGGCGGCCTGGGCGCGGCGGCCCTTGGTGGGG
GGGGCCGCTCGCACCCTCCTGCGGAGGTATTGGCGAGCGTGCCTGAGGAG
GAGGGGGGGGGCGAGGCCCCGAGGGCAGGCAAAGGCGGGGGCCTGGAGTC
CCTGGCGCGGCGGGAGCGCTCCCACATGGCCCGCCTCCGCGCCCGGGAGT
GGGAGCTCGAGGCCCTCCTCCGGGAAGTAGAGGCCTCCCTGGAAGACACC
CGGAAGGACCGGGAGAAATGCCTCCACGACATGGACTCCACAACGACCTC
CTCGTCGAAACCCCGGGGGGCGGGCGGCCTGGGCGCGGCGGCCCTTGGTG
GGGGGGGCCGCTCGCACCCTCCTGCGGAGGTATTGGCGAGCGTGCCTGAG
GAGGAGGGGGGGGGCGAGGCCCCGAGGGCAGGCAAAGGCGGG
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