mRNA_S-ischiensis_contig9.20438.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20438.1
Unique NamemRNA_S-ischiensis_contig9.20438.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:434719..435087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.5708458-CDS-S-ischiensis_contig9:434718..4350871622817370.5708458-CDS-S-ischiensis_contig9:434718..435087Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 434719..435087 +
1695741062.9374392-CDS-S-ischiensis_contig9:434718..4350871695741062.9374392-CDS-S-ischiensis_contig9:434718..435087Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 434719..435087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20438.1prot_S-ischiensis_contig9.20438.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 434719..435087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20438.1

>prot_S-ischiensis_contig9.20438.1 ID=prot_S-ischiensis_contig9.20438.1|Name=mRNA_S-ischiensis_contig9.20438.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=123bp
KRQGRGRVTAAPPRNRSVGSPLLSLPRPPPPPRWAQKCVLTARPMMMMMW
PGGRRAPPPPPKSSPVCGRLSSLAAAAAAAAAVAEEESSSSSRSQPWCGI
SVVAVSKMSVGQLARRQRGQQSR
back to top

mRNA from alignment at S-ischiensis_contig9:434719..435087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20438.1 ID=mRNA_S-ischiensis_contig9.20438.1|Name=mRNA_S-ischiensis_contig9.20438.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=369bp|location=Sequence derived from alignment at S-ischiensis_contig9:434719..435087+ (Schizocladia ischiensis KU_0333)
AAACGGCAGGGGAGGGGGAGGGTCACGGCCGCTCCTCCCAGGAACCGCAG
CGTGGGGTCGCCCCTGCTGTCGCTGCCGCGGCCGCCACCCCCCCCGCGGT
GGGCACAGAAATGCGTGCTGACGGCTCGCCCGATGATGATGATGATGTGG
CCCGGGGGGCGGAGGGCGCCACCTCCGCCTCCCAAGTCCTCACCCGTCTG
CGGGCGGCTCTCCTCGTTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGG
CAGAGGAGGAGAGCAGCAGCAGCAGCCGGAGCCAGCCTTGGTGCGGTATC
TCTGTGGTGGCGGTGTCAAAGATGTCAGTAGGCCAGCTGGCGCGGCGGCA
GCGGGGGCAGCAAAGCAGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:434719..435087+

>mRNA_S-ischiensis_contig9.20438.1 ID=mRNA_S-ischiensis_contig9.20438.1|Name=mRNA_S-ischiensis_contig9.20438.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig9:434719..435087+ (Schizocladia ischiensis KU_0333)
AAACGGCAGGGGAGGGGGAGGGTCACGGCCGCTCCTCCCAGGAACCGCAG
CGTGGGGTCGCCCCTGCTGTCGCTGCCGCGGCCGCCACCCCCCCCGCGGT
GGGCACAGAAATGCGTGCTGACGGCTCGCCCGATGATGATGATGATGTGG
CCCGGGGGGCGGAGGGCGCCACCTCCGCCTCCCAAGTCCTCACCCGTCTG
CGGGCGGCTCTCCTCGTTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGG
CAGAGGAGGAGAGCAGCAGCAGCAGCCGGAGCCAGCCTTGGTGCGGTATC
TCTGTGGTGGCGGTGTCAAAGATGTCAGTAGGCCAGCTGGCGCGGCGGCA
GCGGGGGCAGCAAAGCAGGAAACGGCAGGGGAGGGGGAGGGTCACGGCCG
CTCCTCCCAGGAACCGCAGCGTGGGGTCGCCCCTGCTGTCGCTGCCGCGG
CCGCCACCCCCCCCGCGGTGGGCACAGAAATGCGTGCTGACGGCTCGCCC
GATGATGATGATGATGTGGCCCGGGGGGCGGAGGGCGCCACCTCCGCCTC
CCAAGTCCTCACCCGTCTGCGGGCGGCTCTCCTCGTTGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTGGCAGAGGAGGAGAGCAGCAGCAGCAGCCGGAG
CCAGCCTTGGTGCGGTATCTCTGTGGTGGCGGTGTCAAAGATGTCAGTAG
GCCAGCTGGCGCGGCGGCAGCGGGGGCAGCAAAGCAGG
back to top