mRNA_S-ischiensis_contig9.20436.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20436.1
Unique NamemRNA_S-ischiensis_contig9.20436.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20436.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.670e-28
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  262 TDAAAPPVVTASESERLAAMGVERPSGRHPGYILTLFGKKTRRCRACRGCLSADCMRCRFCKDMPKNGGRGSYKQPCEARRCVWVEY 522
            T    PP     +   LA  G ++P G+HPGYI+TL+GKK RRC  C  C SADC +CR+C DMPK+GGRGSYKQPCEAR+C WVE+
Sbjct:  445 TTGTQPPRFGKQDKALLATHGAKQPKGKHPGYIITLYGKKVRRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWVEF 531
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BLAST of mRNA_S-ischiensis_contig9.20436.1 vs. uniprot
Match: UPI001652AECD (uncharacterized protein LOC101846617 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI001652AECD)

HSP 1 Score: 57.0 bits (136), Expect = 2.820e-6
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:  370 FGKKTRRCRACRGCLSADCMRCRFCKDMPKNGGRGSYKQPCEARRCVW 513
             GK+ RRC+ C+GCL+ +C  C FCKD PK GG G  K+ C    C++
Sbjct: 1189 LGKRKRRCKECKGCLTPECGNCVFCKDKPKFGGPGKMKKSCIHSTCLF 1236
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BLAST of mRNA_S-ischiensis_contig9.20436.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  373 GKKTR-RCRACRGCLSADCMRCRFCKDMPKNGGRGSYKQPCEARRCV 510
            GKK R  C+ C+ C+S DC  C +C DMP+ GG G  + PC+ R+C+
Sbjct:  499 GKKDRVPCKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQCL 545
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BLAST of mRNA_S-ischiensis_contig9.20436.1 vs. uniprot
Match: A0A553PJD9_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PJD9_TIGCA)

HSP 1 Score: 52.8 bits (125), Expect = 7.890e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:  376 KKTRRCRACRGCLSADCMRCRFCKDMPKNGGRGSYKQPCEARRC 507
            K+T  C+ C  C+  DCMRC +C D  K+GG+G+ K+ C  R+C
Sbjct:  915 KRTVACKKCENCVKKDCMRCMYCLDRKKHGGKGNLKKVCLERKC 958
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LN86_ECTSI1.670e-2858.62Similar to DNA (Cytosine-5-)-methyltransferase (Pa... [more]
UPI001652AECD2.820e-647.92uncharacterized protein LOC101846617 n=1 Tax=Aplys... [more]
A0A553P9S0_TIGCA2.160e-546.81Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A553PJD9_TIGCA7.890e-545.45Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:426570..427398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue9.8e-25
Seed eggNOG ortholog2880.D8LN86
EggNOG OGs2D052@1,2SCUE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size524
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.5794466-CDS-S-ischiensis_contig9:426569..4266671622817377.5794466-CDS-S-ischiensis_contig9:426569..426667Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 426570..426667 +
1695741067.415441-CDS-S-ischiensis_contig9:426569..4266671695741067.415441-CDS-S-ischiensis_contig9:426569..426667Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 426570..426667 +
1622817377.5926688-CDS-S-ischiensis_contig9:426974..4273981622817377.5926688-CDS-S-ischiensis_contig9:426974..427398Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 426975..427398 +
1695741067.4267883-CDS-S-ischiensis_contig9:426974..4273981695741067.4267883-CDS-S-ischiensis_contig9:426974..427398Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 426975..427398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20436.1prot_S-ischiensis_contig9.20436.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 426570..427398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20436.1

>prot_S-ischiensis_contig9.20436.1 ID=prot_S-ischiensis_contig9.20436.1|Name=mRNA_S-ischiensis_contig9.20436.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=174bp
MLGDGGHPNRLNLEPDGGSPDAFLARRRGASFGASLRPGAASRPAKTKSR
ARGKATRAGGKGGGGGSAGTGRKRGGGGGGEGDKWDGTDAAAPPVVTASE
SERLAAMGVERPSGRHPGYILTLFGKKTRRCRACRGCLSADCMRCRFCKD
MPKNGGRGSYKQPCEARRCVWVEY
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mRNA from alignment at S-ischiensis_contig9:426570..427398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20436.1 ID=mRNA_S-ischiensis_contig9.20436.1|Name=mRNA_S-ischiensis_contig9.20436.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=829bp|location=Sequence derived from alignment at S-ischiensis_contig9:426570..427398+ (Schizocladia ischiensis KU_0333)
ATGTTGGGGGACGGGGGACACCCCAACCGGCTCAACCTGGAGCCAGACGG
GGGGAGCCCGGATGCCTTCCTGGCGAGGCGGCGGGGGGCGTCGTTCGGGT
GAGTTGAGAGTGTACCATGGTACTCAGTAGAGGATGCTCCGTCCGGGCTA
GTTGGGATGCAAGAGTGTCTCCACATCTATGAGTACTCCTGCCGGAGGGC
AACCAGCAGTTTCGACTTGGGGCTGTCTCGGCAATGCACGCAAGGTTATG
TCGCAAGACAAGCCAACGAGTAGGTATGCATATTGCTATGTACTTCGTAG
TATTTAGGCCCGGTTGCCAAAGCAGGTTGATGCCACGCCATACACTCGTG
CCCACTTTCACCCACCAACCCCGCCACACTATTTTATCCCAACCACCGCC
AGCAGGGCCTCCCTCCGCCCCGGGGCCGCGAGCCGCCCCGCCAAGACCAA
GTCCCGTGCCCGGGGGAAGGCAACCAGGGCCGGGGGCAAGGGTGGCGGCG
GCGGCAGCGCGGGAACAGGCCGGAAGCGGGGCGGCGGCGGCGGCGGCGAG
GGCGACAAGTGGGACGGCACGGACGCCGCAGCGCCGCCGGTGGTTACGGC
GAGCGAGAGCGAGCGGCTCGCGGCCATGGGGGTGGAGCGCCCGTCGGGCA
GGCACCCGGGGTATATCCTGACGCTCTTCGGGAAGAAGACGCGGCGGTGC
CGCGCGTGCCGCGGCTGTCTCTCGGCGGACTGCATGCGCTGCCGCTTCTG
TAAAGACATGCCCAAGAACGGCGGACGCGGCTCCTACAAGCAGCCCTGTG
AGGCCCGACGCTGCGTCTGGGTGGAGTAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:426570..427398+

>mRNA_S-ischiensis_contig9.20436.1 ID=mRNA_S-ischiensis_contig9.20436.1|Name=mRNA_S-ischiensis_contig9.20436.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1044bp|location=Sequence derived from alignment at S-ischiensis_contig9:426570..427398+ (Schizocladia ischiensis KU_0333)
ATGTTGGGGGACGGGGGACACCCCAACCGGCTCAACCTGGAGCCAGACGG
GGGGAGCCCGGATGCCTTCCTGGCGAGGCGGCGGGGGGCGTCGTTCGGAT
GTTGGGGGACGGGGGACACCCCAACCGGCTCAACCTGGAGCCAGACGGGG
GGAGCCCGGATGCCTTCCTGGCGAGGCGGCGGGGGGCGTCGTTCGGGGCC
TCCCTCCGCCCCGGGGCCGCGAGCCGCCCCGCCAAGACCAAGTCCCGTGC
CCGGGGGAAGGCAACCAGGGCCGGGGGCAAGGGTGGCGGCGGCGGCAGCG
CGGGAACAGGCCGGAAGCGGGGCGGCGGCGGCGGCGGCGAGGGCGACAAG
TGGGACGGCACGGACGCCGCAGCGCCGCCGGTGGTTACGGCGAGCGAGAG
CGAGCGGCTCGCGGCCATGGGGGTGGAGCGCCCGTCGGGCAGGCACCCGG
GGTATATCCTGACGCTCTTCGGGAAGAAGACGCGGCGGTGCCGCGCGTGC
CGCGGCTGTCTCTCGGCGGACTGCATGCGCTGCCGCTTCTGTAAAGACAT
GCCCAAGAACGGCGGACGCGGCTCCTACAAGCAGCCCTGTGAGGCCCGAC
GCTGCGTCTGGGTGGAGTATGGCCTCCCTCCGCCCCGGGGCCGCGAGCCG
CCCCGCCAAGACCAAGTCCCGTGCCCGGGGGAAGGCAACCAGGGCCGGGG
GCAAGGGTGGCGGCGGCGGCAGCGCGGGAACAGGCCGGAAGCGGGGCGGC
GGCGGCGGCGGCGAGGGCGACAAGTGGGACGGCACGGACGCCGCAGCGCC
GCCGGTGGTTACGGCGAGCGAGAGCGAGCGGCTCGCGGCCATGGGGGTGG
AGCGCCCGTCGGGCAGGCACCCGGGGTATATCCTGACGCTCTTCGGGAAG
AAGACGCGGCGGTGCCGCGCGTGCCGCGGCTGTCTCTCGGCGGACTGCAT
GCGCTGCCGCTTCTGTAAAGACATGCCCAAGAACGGCGGACGCGGCTCCT
ACAAGCAGCCCTGTGAGGCCCGACGCTGCGTCTGGGTGGAGTAT
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