mRNA_S-ischiensis_contig9.20432.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20432.1
Unique NamemRNA_S-ischiensis_contig9.20432.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20432.1 vs. uniprot
Match: A0A6H5JKB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.330e-32
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 2 
Query:    2 RRKSLTMWPARLCSRDEVLERLSRGLLEDEAVDARQQCLVVFLCEGGHHVHDWVRPRHIRAYMSHAAAYPYKKRXXXXXXXXXXDFAAAEAWGERLQQEVRARRVEMRRALRER 343
            RRKS TMWPARLCS+ E+LER+      DE VD R  CLVVFLCEGGHHV DWV P  +R Y+ HAAAYPYKK+          DF AAEAWGE ++  V ARR E R   R+R
Sbjct:  604 RRKSQTMWPARLCSKREMLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQPDFTAAEAWGEEMKALVTARRAEARTLRRQR 717
[Close]
BLAST of mRNA_S-ischiensis_contig9.20432.1 vs. uniprot
Match: D7G062_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G062_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.320e-16
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   53 VLERLSRGLLEDEAVDARQQCLVVFLCEGGHHVHDWVRPRHIRAYMSHAAAYPYKKR 223
            +LER+      DE VD R  CLVVFLCEGGHHV DWV P  +R Y+ HAAAYPYKK+
Sbjct:    1 MLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKK 57
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKB5_9PHAE5.330e-3258.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G062_ECTSI1.320e-1663.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:419859..421885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20432.1prot_S-ischiensis_contig9.20432.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 419859..421885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.64701-CDS-S-ischiensis_contig9:419858..4199101622817363.64701-CDS-S-ischiensis_contig9:419858..419910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 419859..419910 +
1695741058.4769661-CDS-S-ischiensis_contig9:419858..4199101695741058.4769661-CDS-S-ischiensis_contig9:419858..419910Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 419859..419910 +
1622817363.6582031-CDS-S-ischiensis_contig9:420251..4204971622817363.6582031-CDS-S-ischiensis_contig9:420251..420497Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 420252..420497 +
1695741058.486625-CDS-S-ischiensis_contig9:420251..4204971695741058.486625-CDS-S-ischiensis_contig9:420251..420497Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 420252..420497 +
1622817363.6749635-CDS-S-ischiensis_contig9:421736..4218851622817363.6749635-CDS-S-ischiensis_contig9:421736..421885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 421737..421885 +
1695741058.4960601-CDS-S-ischiensis_contig9:421736..4218851695741058.4960601-CDS-S-ischiensis_contig9:421736..421885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 421737..421885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20432.1

>prot_S-ischiensis_contig9.20432.1 ID=prot_S-ischiensis_contig9.20432.1|Name=mRNA_S-ischiensis_contig9.20432.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
QAQELDHVAGKAVLPRRGAGAPVPRPPGGRGRGRAPAVPGGLPLRGGTPR
ARLGAPAPHPRLHVPRRRVPLQEACVRGERPPAAGLCGRRGVGGAPAAGG
ARPPGRDAPGPPREESRSCRRRRRHGLGGGGGGGGVRQGPGSDDATQGT
back to top

mRNA from alignment at S-ischiensis_contig9:419859..421885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20432.1 ID=mRNA_S-ischiensis_contig9.20432.1|Name=mRNA_S-ischiensis_contig9.20432.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2027bp|location=Sequence derived from alignment at S-ischiensis_contig9:419859..421885+ (Schizocladia ischiensis KU_0333)
CAGGCGCAAGAGCTTGACCATGTGGCCGGCAAGGCTGTGCTCCCGCGACG
AGGTGCGTGTGTGTGTGTGTGCTCCCGCAAGGAGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTCTCGCTTTGCTCT
CACGCCGAACAGAGGACAAGAGCCTCACCATGTGGCCGGCGCATGTGCTC
CCGCGACGAGGTGCGTGTGCGTGTGCGTGTGCGCGCGCGGGTGTGTGTGT
GTGTGTGTTTCGCTTTACACTCACGCAGAACAGAGGTTGCCCTGGCAGAA
AGATTTCTCGCAGTAGTTTCCGCCCCAGAGGAGACGACCATTTGATCGAT
TGCACATCCCGTTGCACCGCGCGGCGAAACCCTGGTGTTGCAGGTGCTGG
AGCGCCTGTCCCGAGGCCTCCTGGAGGACGAGGCCGTGGACGCGCGCCAG
CAGTGCCTGGTGGTCTTCCTCTGCGAGGGGGGACACCACGTGCACGACTG
GGTGCGCCCGCGCCACATCCGCGCCTACATGTCCCACGCCGCCGCGTACC
CCTACAAGAAGCGTGCGTACGCGGGGAACGCCCGCCTGCAGCCGGACTTT
GCGGCCGCCGAGGCGTGGGGGGAGCGCCTGCAGCAGGAGGTGAGGGGGAG
TCATTCGATTGGCCGACAAGCGGTTCGGCGAGGATTCATATACTTAGAAG
TAAAATGTAACGAGGTACAATCGCACGTGTGTGAGATTGAGTATTCTCGT
ATTAGTGGTTATCCCATTTAAGAATTGAGTGTTCTTGTATTAGTGGTTGT
CGCATCAAAGAGTTAAAAACAAAAAGGGTCCGATATGATTGGTCGCCACG
ATTTGGTCGGTCTATTTCGTTGGTTGTCTACGGCCGCGGCCGTCGGGAAG
CGCCTGCGGCAAGGAGGTAAGGGGGGGGTAAATACTCGTGGAGGACTGGC
CGGAATGGTTGCGCCATTGCCACTGGACCCTGTGGCTGGTTCGGTCAAGT
CCGTTGGTGGACACAGTCGGGAAAGGCGGGGGGGGCGGGAGGTGCATGAC
TTGGGTTGTGGTGGCCTTATGATACGAGCGTTTCTCCACGCCCCCGAAAG
GGGTGATGCTACGGGCCAGGCCGCCGTTTCCTCTCTCTTGTCGGGGAGGC
AGGCTGCTTGTACGGCCAGTCTCTCCATTCTTTGTCGTCGCCACAGGCAA
GGCAAGGAGGGGGGGGGCTCAAGGTCAACGGGGCGTCCTAACCCCTGGCC
CCATTGGTCACAGTGTGTAAGGGTTGTAAACAGTAACAGTACTCGGTACT
TGACGGAGCTCTTGGAAGCACACAGCTATCCGGACAAAAGCACTTGTTGC
CACCGCCATGATCGCAGCGGACTGGGGCACACATCACGGAGGTCTCGGGA
AGTACCGTAATCGTCGGGGAGATCTTCCCCCCCCATGCCAATTTTCTGGA
GAAATTTTCTCGCCGAATACTGGCCGGATTCGCTCAGGAAACTCGGAAAA
TCTCCCTCAGGACCTGGGGGAACTTTTCCGGGGCTTTCGGGATAATCCAG
GACCTATCCGGCTAGAGATATTCCCCCGACAATTGTCCCGTGAGGGCAAA
ATCTCTCCGATGACTACGGTACTGCCCCAAGTACCCAGTGTTGGCGCGCA
TCGGCCTTTCGATACGATAGCACCTTTGAGAAGTACCCAGCAAAACCGCC
TGGCAGTTAGAGGGGCTTGTTGCGACCGGTGCACGGGGCTCTCCGGCGCG
TGAGAACGCTGGCGGAGTGCGTGGATGTGGCTCGACTGCGGTGGCAAGAC
ACTTCGACGGTCTCACACCACCACTTCTGAACCTGCATCCCTGGCCCCTG
TCGATACTGTACTGCCAATTCCCCCCAGGTGCGCGCCCGCCGGGTCGAGA
TGCGCCGGGCCCTCCGCGAGAGGAGAGCCGCAGCTGCCGCCGCCGCCGCC
GCCACGGCCTTGGCGGCGGCGGAGGCGGAGGAGGCGTCCGCCAAGGCCCA
GGCTCAGACGACGCAACCCAAGGCACT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:419859..421885+

>mRNA_S-ischiensis_contig9.20432.1 ID=mRNA_S-ischiensis_contig9.20432.1|Name=mRNA_S-ischiensis_contig9.20432.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig9:419859..421885+ (Schizocladia ischiensis KU_0333)
CAGGCGCAAGAGCTTGACCATGTGGCCGGCAAGGCTGTGCTCCCGCGACG
AGCAGGCGCAAGAGCTTGACCATGTGGCCGGCAAGGCTGTGCTCCCGCGA
CGAGGTGCTGGAGCGCCTGTCCCGAGGCCTCCTGGAGGACGAGGCCGTGG
ACGCGCGCCAGCAGTGCCTGGTGGTCTTCCTCTGCGAGGGGGGACACCAC
GTGCACGACTGGGTGCGCCCGCGCCACATCCGCGCCTACATGTCCCACGC
CGCCGCGTACCCCTACAAGAAGCGTGCGTACGCGGGGAACGCCCGCCTGC
AGCCGGACTTTGCGGCCGCCGAGGCGTGGGGGGAGCGCCTGCAGCAGGAG
GTGCTGGAGCGCCTGTCCCGAGGCCTCCTGGAGGACGAGGCCGTGGACGC
GCGCCAGCAGTGCCTGGTGGTCTTCCTCTGCGAGGGGGGACACCACGTGC
ACGACTGGGTGCGCCCGCGCCACATCCGCGCCTACATGTCCCACGCCGCC
GCGTACCCCTACAAGAAGCGTGCGTACGCGGGGAACGCCCGCCTGCAGCC
GGACTTTGCGGCCGCCGAGGCGTGGGGGGAGCGCCTGCAGCAGGAGGTGC
GCGCCCGCCGGGTCGAGATGCGCCGGGCCCTCCGCGAGAGGAGAGCCGCA
GCTGCCGCCGCCGCCGCCGCCACGGCCTTGGCGGCGGCGGAGGCGGAGGA
GGCGTCCGCCAAGGCCCAGGCTCAGACGACGCAACCCAAGGCACTGTGCG
CGCCCGCCGGGTCGAGATGCGCCGGGCCCTCCGCGAGAGGAGAGCCGCAG
CTGCCGCCGCCGCCGCCGCCACGGCCTTGGCGGCGGCGGAGGCGGAGGAG
GCGTCCGCCAAGGCCCAGGCTCAGACGACGCAACCCAAGGCACT
back to top