mRNA_S-ischiensis_contig9.20428.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20428.1
Unique NamemRNA_S-ischiensis_contig9.20428.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 8.410e-68
Identity = 160/320 (50.00%), Postives = 194/320 (60.62%), Query Frame = 1 
Query:  835 SYDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGGLEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREVLSLFSQLTQAVLSAG 1794
            +Y TWYPPLRSTL VLSKVYRAVD+GVFEDLAQ +VAAC  +LK                                          XXXXXXXXX   +  G LDA LFLIKHLLTLREQLTPF ++F HA++KLNF STR ALR+F+RHTP+LFRL  +NALVELTVDS+PT+DE+Q  A    E T +   D                             GLE L+ QPFA+P R ++   AA+FS  AA P V + MSLYL+N AT GILLHPVQR+VVD      ++LQ+LHPAEDL E++ L ++++Q  LSAG
Sbjct:  658 AYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGSAPSPPVSSGGGGRGAPGGALAGGSVVPRXXXXXXXXXG--SGEGGLDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTRMALRKFIRHTPALFRLSSKNALVELTVDSIPTIDEVQARA---FEDTSREDVD---------------------------GAGLESLRAQPFANPDRVKDAFHAAVFSATAALPRVCAAMSLYLDNKATEGILLHPVQRRVVDAVDGVRDVLQRLHPAEDLEEIMPLLTRVSQLALSAG 945
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.730e-53
Identity = 135/342 (39.47%), Postives = 179/342 (52.34%), Query Frame = 1 
Query:  832 SSYDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTP--SLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDG-----------------GLEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREVLSLFSQLTQAVLSAGGG 1800
            ++YDTWYPP+R  LLVLSK+YR VD+GVFED+A   V A T AL                                                       A A  LD HLFL+KHLLTLREQL PFD+ F   DRKLNFS+T SALRR  + +   +LFRL  +N L++   +SLP VDE++VDA++DME  L+  C+  +ACAAD+ A PLL+F  KA  FR + G                 G+  L+ Q FA PAR +E L AA  ++  + P++   M LYL N  T GILL PV R V+D   +   LL++L+  ++  E+  L  ++T       GG
Sbjct:  760 AAYDTWYPPMRVGLLVLSKIYRVVDMGVFEDIAAETVRAVTAALVAAGRAVA-----------------------------------------------AHASSLDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTTVSALRRLAQPSSGLALFRLSMQNVLIQTAKNSLPAVDEVEVDARQDMEEALREGCNALVACAADMAAEPLLAFLAKARVFRGRSGLAAPDGASDAVSAVGGTGVGQLRAQAFAQPARLRESLVAAAEALERSLPQILGSMRLYLGNPVTVGILLSPVLRIVLDSVSEVRMLLEELYEPQEATEIEPLLRRITNFADQETGG 1054
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A7S2SLN9_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 166 bits (420), Expect = 9.370e-40
Identity = 110/305 (36.07%), Postives = 147/305 (48.20%), Query Frame = 1 
Query:  838 YDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGG------------------LEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKD 1698
            Y  WYPPLRSTL++LSK+Y AV+  VFEDLA   V  CT  L                                                       +  G  D  LFLIKHLLTLREQLTPFD+ F+   R+L+FSSTR AL RF+     +F + R+NAL+ L  D LP VDE  VDA++++E  LK +C+ FI  A   +A PL++F+ KA A                         L+ LK QPFAS  R  + ++ +   V      +  +M LYL++A T  IL  P+QR+V+   +D
Sbjct:   15 YAGWYPPLRSTLILLSKIYHAVENSVFEDLAGETVGLCTDVL-----------------------------------------------GAAASRVSSLHGSEDGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTRQALSRFMAERGRVFAMTRQNALLSLAKDGLPQVDEQCVDARKELEEALKSSCNHFIQKATSDLAEPLVAFSTKARALSTAAASSPARADVVRPAKTTSPLSLDALKDQPFASSQRVGDAVATSAGLVALRLKPLVEKMLLYLDSAVTRSILFKPIQRRVLHATQD 272
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: W7U7M5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.770e-38
Identity = 105/321 (32.71%), Postives = 162/321 (50.47%), Query Frame = 1 
Query:  838 YDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGG----------------LEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQL-HPAEDLREV 1749
            Y TW+P L+ TL +LSK+YRAV++ VF+++AQ A+AACT +                                                           G +DA LFL+KHLL LREQL PFD+ FA  +++L+F+STR AL RF     +LFR+  +NAL+ L + S+PTV+E +VD ++++E++LK  C+ FI  A   +A P+ +   KA AF                      L+ L  Q F  PAR +  L  A   +L A P ++  +SLYL++  T  IL  PV+++++ + +   +LL  L H + D+ ++
Sbjct:  106 YATWFPTLQMTLSLLSKIYRAVELHVFQEMAQQALAACTYSFLAAAKVLREQK-----------------------------------------------GDMDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTRGALTRFFVDRHNLFRMGTDNALLSLALGSVPTVNEEEVDTRKELEASLKSACNAFILHATSHLAEPIATLLQKARAFLPTSSSNPSPPSSSLPYIDPTTLQTLSAQAFLQPARLEATLLEAHEGLLTALPALSHLLSLYLDHNNTKAILFRPVRQRILTLLQQLRDLLGLLFHTSTDVVKI 379
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: D8TV10_VOLCA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TV10_VOLCA)

HSP 1 Score: 158 bits (400), Expect = 5.440e-36
Identity = 133/331 (40.18%), Postives = 172/331 (51.96%), Query Frame = 1 
Query:  838 YDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGG-------------LEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREVLSLFSQLTQAVLSA 1791
            Y T +PPLR+TLLVLSK+YRAVD  +F  LAQ AV+ACT A++            XXXXXXXXXXXXXXXXXX                            P+DA LF+I++LL LREQ+ PFDV FA  D  L+FS  R  LRR +    SLF L   NA+V +   S P V   Q+D+K+++E  LK  C+  I     V   P+LSF  K  A R   GG              + L+ Q FASPA+  EM+     ++    P   S+M LYL N AT GILL PV+  + +     ++LLQ  +  E+  +V     Q   AVL +
Sbjct:  618 YATLFPPLRATLLVLSKLYRAVDSKIFGGLAQEAVSACTVAVQQASRAVARRAVPXXXXXXXXXXXXXXXXXXTT--------------------------PMDAQLFMIRNLLFLREQIVPFDVDFAVTDIDLDFSHMRDHLRRIMLGQESLFTLGSSNAMVRMLGPSGPRVLTYQLDSKKELEKALKAVCEALIMALTKVAVEPMLSFITKVTAVRLAAGGQSAASTTAAGAQATKPLREQAFASPAKLVEMVGRVNAALSGPLPAAVSKMRLYLPNPATHGILLKPVKSNIAEAHGQIAKLLQMEYSPEEAAQVPLHDPQQLAAVLDS 922
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 6.350e-36
Identity = 94/217 (43.32%), Postives = 123/217 (56.68%), Query Frame = 3 
Query:   15 LETSPVYREFRNISHRVHRAVSLIRRHARTASLLP-LLVECEQFYFEKRLHLLRPAVRAHLQELSKERDLVAVVRFGAAFLIRLGQLETQLYDDFIGG---------------------------GGAAEEAETVHEDLSN------------------------LNLSREDGDSNGGSGTSGLHDMLLVLCSELHKHLRPRMFHGTDMDTLCEMVG 509
            LETS +Y  FR++SHRV+  V+L+R++   A L+  LL +  Q YFEKRL LLRPAVR+HL+ +SK+R + A++RFGAAFL+R+GQLETQLYD  +G                            G ++   E V E   N                        L+L RE+  +    G +GL+ MLL LCSELHKHLRPR++HGTDMDTLCE  G
Sbjct:  315 LETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXXNGTYEATGTSSPRGEQVKEGRRNXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCERAG 531
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A662YGD8_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGD8_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.050e-35
Identity = 99/321 (30.84%), Postives = 154/321 (47.98%), Query Frame = 1 
Query:  832 SSYDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGGLE-DLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLR---EVLSLFSQLTQAV 1782
            S Y TWYP L  TLL LSK Y  V++ +FE+LAQ A+  CT +LK                                                      AA G L   LFL+KHLLTLREQ+TPF++RFA   + L+F+S+  A+ + L    ++FR    N LV L    +P + E   D K+++E  LK +C  FI     ++A PLL+   + A  ++       D ++  F +PA    +L++    +    PEV   + LYL N +T  IL  PVQR ++D  ++ + +++Q +  E+L+   E +++  Q  +A+
Sbjct:  306 SLYATWYPSLEHTLLCLSKGYHFVNMEIFEELAQDAIQICTASLKMASADIT-----------------------------------------------AAQGGLHGALFLVKHLLTLREQITPFEIRFAQTSKALDFTSSADAMNQLLADASTIFRFSGPNGLVGLFTRGIPQIQETTADVKKELEQELKKSCTAFIETVLQLLARPLLALMKQIAQVQQTQKATALDFRQCAFTAPAEVNNVLASVAKQLQEVLPEVLQTIHLYLRNVSTETILFKPVQRNLLDAVENLNAMMEQTYTREELQPCEETITIVLQQLRAL 579
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A250WPT6_9CHLO (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WPT6_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 3.850e-34
Identity = 103/309 (33.33%), Postives = 147/309 (47.57%), Query Frame = 1 
Query:  835 SYDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFR----EKDGGLEDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREV 1749
            +Y   Y P++STL+ LSK+YRAVD  +F  LAQ AV+ACT +++                                                        AGPLDA LF I+HLL LREQ+ PFDV F+ +D  L+FS  R  +RR L    SLF L   NA+V++     P V   +VD+K+++E  LKG C+  I     V   P+L F  K  A R          + ++ Q FASP++  EM+     ++  + P   SRM LYL N +T  IL  PV+  +V+     + LL+  + AE++  V
Sbjct:  573 AYTLMYLPVQSTLMCLSKLYRAVDARIFSGLAQEAVSACTLSIQQAARMVAQR-----------------------------------------------AGPLDAQLFTIRHLLFLREQIAPFDVEFSASDIDLDFSHMRDHMRRILSGEVSLFALSSSNAVVKMLGTGGPRVLHYRVDSKKELEKQLKGVCEAVIMAMTKVAVEPMLGFITKVTAVRVAAAANPATAKPIREQAFASPSKLAEMVQRVNEALGGSLPLAVSRMKLYLPNPSTHAILFRPVKSNLVEAHNQVANLLKSEYTAEEVASV 834
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A2K3DZ57_CHLRE (Conserved oligomeric Golgi complex subunit 3 n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DZ57_CHLRE)

HSP 1 Score: 152 bits (383), Expect = 7.030e-34
Identity = 141/327 (43.12%), Postives = 180/327 (55.05%), Query Frame = 1 
Query:  838 YDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFR---EKDGGL----EDLKRQPFASPARAQEMLSAALFSVLAATPEVA--SRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREVLSLFSQLTQAVLSA 1791
            Y + +PPLR+TLLVLSK+YRAVD  +F  LAQ AV+ACT A++                 XXXXXXXXXXXXXXXXXXXXXXXXX                PLDA LF+I++LL LREQ+ PFDV FA  D  L+FS  R  LRR +    SLF L   NA+V +   S P V   Q+D+K+++E  LK  C+  I     V   P+LSF  K  A R   +  G      + ++ Q FAS A+  EM+     ++ A  P  A  S+M LYL N AT  ILL PV+  + +     ++LLQ  +  E+  EV     Q  QAVL A
Sbjct:  656 YASLFPPLRATLLVLSKLYRAVDSKIFGGLAQEAVSACTVAVQNASRAVAKRAAGSAPALXXXXXXXXXXXXXXXXXXXXXXXXX------------GMTSPLDAQLFMIRNLLFLREQIVPFDVDFAVTDIDLDFSHMRDHLRRIMVGQESLFTLGPSNAMVRMLGASGPRVLTYQLDSKKELEKALKSVCEALIMALTKVAVEPMLSFITKVTAVRLAGQSSGAAAQATKPMREQAFASTAKLGEMVGRVNAAMAAGGPLAAAVSKMRLYLPNPATHAILLKPVKSNIAEAHGQIAKLLQTDYTPEEAAEVPLHNPQQLQAVLEA 970
[Close]
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Match: A0A8J4LZY9_9CHLO (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4LZY9_9CHLO)

HSP 1 Score: 151 bits (382), Expect = 7.950e-34
Identity = 135/327 (41.28%), Postives = 175/327 (53.52%), Query Frame = 1 
Query:  838 YDTWYPPLRSTLLVLSKVYRAVDVGVFEDLAQTAVAACTTALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAAGPLDAHLFLIKHLLTLREQLTPFDVRFAHADRKLNFSSTRSALRRFLRHTPSLFRLDRENALVELTVDSLPTVDEIQVDAKRDMESTLKGTCDTFIACAADVVASPLLSFANKAAAFREKDGGL-----------EDLKRQPFASPARAQEMLSAALFSVLAATPEVASRMSLYLENAATAGILLHPVQRKVVDVAKDTSELLQQLHPAEDLREVLSLFSQLTQAVL 1785
            Y T +PPLR+TLLVLSK+YRAVD  +F  LAQ AV+ACT A++         XXXXXXXXXXXXXXXXXXXXXXXX                         PLDA LF+I++LL LREQ+ PFDV FA  D  L+FS  R  LRR +    SLF L   NA+V +   S P V   Q+D+K+++E  LK  C+  I     V   P+LSF  K  A R    G            + L+ Q FASPA+  E++     ++    P   ++M LYL N +T  ILL PV+  + +     ++LLQ  +  ++  EV     Q   AVL
Sbjct:  598 YATLFPPLRATLLVLSKLYRAVDPKIFGGLAQEAVSACTLAVQQASRAVARRXXXXXXXXXXXXXXXXXXXXXXXXTT-----------------------PLDAQLFMIRNLLFLREQIVPFDVDFAVTDIDLDFSHMRDHLRRIMLGQESLFTLGPSNAMVRMLGASGPRVFTYQLDSKKELEKALKAVCEALIMALTKVAVEPMLSFITKVTAVRLAAAGQGASAAAGAQASKPLREQAFASPAKLAELVGRVNAALAGPLPAAVAKMRLYLPNPSTHAILLKPVKSNIAEAHGQVAKLLQTEYSPDEALEVPLYNPQQLAAVL 901
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G064_ECTSI8.410e-6850.00Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A835YUG6_9STRA2.730e-5339.47Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S2SLN9_9STRA9.370e-4036.07Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
W7U7M5_9STRA3.770e-3832.71Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
D8TV10_VOLCA5.440e-3640.18Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A6H5JKT8_9PHAE6.350e-3643.32Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A662YGD8_9STRA3.050e-3530.84Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A250WPT6_9CHLO3.850e-3433.33Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A2K3DZ57_CHLRE7.030e-3443.12Conserved oligomeric Golgi complex subunit 3 n=4 T... [more]
A0A8J4LZY9_9CHLO7.950e-3441.28Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:394589..409015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue7.7e-27
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
KEGG koko:K20290
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons11
Model size2860
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.4058428-UTR-S-ischiensis_contig9:394588..3957141622817377.4058428-UTR-S-ischiensis_contig9:394588..395714Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 394589..395714 -
1695741067.2677002-UTR-S-ischiensis_contig9:394588..3957141695741067.2677002-UTR-S-ischiensis_contig9:394588..395714Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 394589..395714 -
1622817377.4171317-UTR-S-ischiensis_contig9:397314..3974941622817377.4171317-UTR-S-ischiensis_contig9:397314..397494Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 397315..397494 -
1695741067.283146-UTR-S-ischiensis_contig9:397314..3974941695741067.283146-UTR-S-ischiensis_contig9:397314..397494Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 397315..397494 -
1622817377.4286451-UTR-S-ischiensis_contig9:398808..3989941622817377.4286451-UTR-S-ischiensis_contig9:398808..398994Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 398809..398994 -
1695741067.294168-UTR-S-ischiensis_contig9:398808..3989941695741067.294168-UTR-S-ischiensis_contig9:398808..398994Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 398809..398994 -
1622817377.4399586-UTR-S-ischiensis_contig9:400550..4006621622817377.4399586-UTR-S-ischiensis_contig9:400550..400662Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 400551..400662 -
1695741067.304947-UTR-S-ischiensis_contig9:400550..4006621695741067.304947-UTR-S-ischiensis_contig9:400550..400662Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 400551..400662 -
1622817377.4504619-UTR-S-ischiensis_contig9:401683..4020191622817377.4504619-UTR-S-ischiensis_contig9:401683..402019Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 401684..402019 -
1695741067.315554-UTR-S-ischiensis_contig9:401683..4020191695741067.315554-UTR-S-ischiensis_contig9:401683..402019Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 401684..402019 -
1622817377.5084898-UTR-S-ischiensis_contig9:406179..4062631622817377.5084898-UTR-S-ischiensis_contig9:406179..406263Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 406180..406263 -
1695741067.3714256-UTR-S-ischiensis_contig9:406179..4062631695741067.3714256-UTR-S-ischiensis_contig9:406179..406263Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 406180..406263 -
1622817377.5192506-UTR-S-ischiensis_contig9:406668..4067651622817377.5192506-UTR-S-ischiensis_contig9:406668..406765Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 406669..406765 -
1695741067.3818734-UTR-S-ischiensis_contig9:406668..4067651695741067.3818734-UTR-S-ischiensis_contig9:406668..406765Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 406669..406765 -
1622817377.5300002-UTR-S-ischiensis_contig9:407361..4074411622817377.5300002-UTR-S-ischiensis_contig9:407361..407441Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 407362..407441 -
1695741067.3945842-UTR-S-ischiensis_contig9:407361..4074411695741067.3945842-UTR-S-ischiensis_contig9:407361..407441Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 407362..407441 -
1622817377.5432148-UTR-S-ischiensis_contig9:408860..4090151622817377.5432148-UTR-S-ischiensis_contig9:408860..409015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 408861..409015 -
1695741067.4057467-UTR-S-ischiensis_contig9:408860..4090151695741067.4057467-UTR-S-ischiensis_contig9:408860..409015Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 408861..409015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.463629-CDS-S-ischiensis_contig9:402019..4022831622817377.463629-CDS-S-ischiensis_contig9:402019..402283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 402020..402283 -
1695741067.3264403-CDS-S-ischiensis_contig9:402019..4022831695741067.3264403-CDS-S-ischiensis_contig9:402019..402283Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 402020..402283 -
1622817377.4754348-CDS-S-ischiensis_contig9:403495..4035491622817377.4754348-CDS-S-ischiensis_contig9:403495..403549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 403496..403549 -
1695741067.3388257-CDS-S-ischiensis_contig9:403495..4035491695741067.3388257-CDS-S-ischiensis_contig9:403495..403549Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 403496..403549 -
1622817377.4868016-CDS-S-ischiensis_contig9:404246..4043481622817377.4868016-CDS-S-ischiensis_contig9:404246..404348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 404247..404348 -
1695741067.3499584-CDS-S-ischiensis_contig9:404246..4043481695741067.3499584-CDS-S-ischiensis_contig9:404246..404348Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 404247..404348 -
1622817377.4977212-CDS-S-ischiensis_contig9:406095..4061791622817377.4977212-CDS-S-ischiensis_contig9:406095..406179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 406096..406179 -
1695741067.361647-CDS-S-ischiensis_contig9:406095..4061791695741067.361647-CDS-S-ischiensis_contig9:406095..406179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 406096..406179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20428.1prot_S-ischiensis_contig9.20428.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 402020..406179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20428.1

>prot_S-ischiensis_contig9.20428.1 ID=prot_S-ischiensis_contig9.20428.1|Name=mRNA_S-ischiensis_contig9.20428.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
MLLVLCSELHKHLRPRMFHGTDMDTLCEMVGVIREEIVEDHYGARARAGR
VGQAAIEGVLQKLVQDSQEKLIYCAVKLIQDEIEGFTPRPEHLDYPAILS
RARAASFSSSSAPLPSRPGGVIARRGGRLCHRRRCRRRLLLRHVVPAAAL
HAPCSEQGVPRGGRGGL*
back to top

mRNA from alignment at S-ischiensis_contig9:394589..409015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20428.1 ID=mRNA_S-ischiensis_contig9.20428.1|Name=mRNA_S-ischiensis_contig9.20428.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=14427bp|location=Sequence derived from alignment at S-ischiensis_contig9:394589..409015- (Schizocladia ischiensis KU_0333)
CAAGGGGGCAGCACCTGGAGACGTCGCCGGTGTACCGGGAGTTTCGGAAC
ATATCGCACCGGGTGCATCGGGCGGTGTCGCTGATTCGGCGGCACGCGAG
GACCGCGTCACTGCTCCCGCTGCTGGTGGAGTGCGAGCAGTTCTACTTTG
AGAAGGTGTGTGTGTGTGTGTGATGTGACGTGATGTGATGTGATGTGTAC
GTAAAAATGCTGTAGTTTGACATCACATCACATAACGTTGTGTCGTCGGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCCGTTCTCTGTCCCTC
TCCCCTCCCGTCCCCTCCTTCCCTCCCACCCTCCTCTACTTTTAGAAGGT
GTGTGTGTGTGCGTGTGTGTGATGTGATGTGATGTGATTTGTACTGAAAA
ACACTGTAGTTTGACATCACATCACATCATATTCTGTCATTGGTGTGTGT
GTGTGTGTGTGTGTGCCTCCGTTGTCTCTCTGTCCCTCTCCCGTCCCCTC
CCTCCCTCCCTCCCTCCTCTACTTTTGAGAAGGTGTGTGTGTGTGTGCCT
CCGTTCTCTCTCTGTCCCTCTCCCCTCCCCTGCCTCCCTCCCTCCCTCCT
CTACTTTTGAGAAGGTGTGTGGGTGTGTGTATAATGTGTGTGCCTCTGTT
CTGTCTCTGCCCCTCTCCCCTCCGCTCCCCTCCCCTCCCTCCCACCCTCC
CTCCCTCCCTCTCTTGCTTGTGTGTGTGCGCGCGCACTTCGGTATGTATT
CTATGGCTAGCCCTTCGACCTGTGTTTGGTAGCTAACGCTTCGATATGTA
TCTGAACCTGTTCTCCTTAACTGCTTGGAAATTCTGAGAAGAATGGTCTC
GGGACCACGGCAAGCACAGCATGAGTACACACACATATGTATACATGTTC
TTCGAGCTACATGTACCATAAACCCCCTTACTCCTGCCGGGCAAACCCCG
GGGAAGTTTTGACTTAGGGTGTAACTGTCGGCAATGCACACACTTCCAAG
CTTGCAGTATGTCGCAAGACAAGCCAATGAGTACATATATATACTACTGT
ACGTAGTATATTTATGCCACCCCCCTTGCAAGACATCAAGGGCGCTTGCT
TTGCTTGCCTCCACATCCCTCGCGTCTCTTCTTGCTTCCGCAGCCGGATT
GACAACTTAGGGGTGGCTGGGCCGTGGCAATCCCACGGGTTGTTTGCACT
TTCATTGGTGTGCCTTCTGGGTGTTGCCTCGCTGTTAAATGCTCTGTCTG
TGCTTGCCTGTTGCTGCCCCCGAACACACAAACGCACATGCACAAGCACA
TGCATGCCCCCCCCTGCCCCCGGGCGCACGCACGCACACACACACGCACA
CACATGCCCGCACACCTCACACCAGTGATGGAATATCTAAGCAAATCGAC
CTATTTGTCGACAGTACTGGTCTACTCTATACTCTATTCTGGTCGATAGT
CGATATTCGATAGTTTGACCAGCACTAAATCCAAGCAGTCCGTACCGCCA
CCCACAAAATCGGTCGAGCCCGATACCTGTCTACCGATCGATATTCCGTC
ACTGCCTCACACAAACGCACACAGCGGCTGCATCTGCTGAGGCCTGCGGT
AAGGGCTCACCTGCAGGAGCTTTCCAAGGAGCGCGACCTGGTGGCTGTTG
TCAGGCAAGTTTGCTGCACATATATATATGTACTCACCTTGTGCTTGCCG
TAGTATCGAGACCATTGCCCACGCTCCTCGGTCGAGACGGAGCAGGGCCC
CTCCCTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCACCCCCGTGCC
ACATGCGGACGGGTGGCCAAGTCCACCCTCCCCCATCCCCGACTCCTGAG
AGTCTGGGTGGGGGGCCCCTTCCCCTGCTAGGCCATATACGTACAGTATA
CACTTGGATGTATTCGTACGTGTTGTGTGTACAGTACACGAGTGCAATAC
ACGCACATTTCCCTGTCTTTGTGCGAAAGGAAGTACAGTAGCCCGTCCTT
GATGCGCCTCCGCTTTTGCCGGCGTTGAGCGCCATTGTCAAGCAATGCAC
CCGTACAGGTTTGGGGCGGCCTTCCTCATCCGATTGGGGCAGCTGAATAC
TTAGGGTTAACCCTTGACCCTAACCTAGCCCTAGCCCTAACCCTAACCTA
ACACTGTTGGCCTCTCCCGGGTTTGGGGCGACCTTCCTCATCCGCCTGGG
GGCAGCTGGAGGCTTAGGGTAGACCCTAACCCTAACCTAACACTGTACAG
GTTTGGGGCGGCCTTCCTCATCCGCTTGGGGCAGCTGGAGACACAGCTCT
ACGACGACTTCATCGGGGGAGGAGGGGCGGCGGAGGAGGCAGAAACGGTC
AGTCAATGCACGAGTGCCTAGTGGTGTCGAAGGGCTTTCCCGCTAGTTGA
AGGTAGTCAGTACACCAGTAGCGGTGTGGAAGGGCTTTCCGGCTAAGGTA
GTTAAAGGTAGTGGCAGCGCTCCCCCCAGACCGTTGTTGAGGACTTGAGC
AACCTCAACCTGTTGGCCGTAGCGAGCCTCCCTAAGAACAGAGGAAACAG
CGCTCCGTCCCGTAGGGTCACCCCTGTGATGTTGATGTGATGTGATGTGA
TGTGATGTCAAACTACTGCACTTTAGAGTGCACATCACTTCACATCACAT
CATTTCACATCACATCCCCTAGGGTCACCCCCGCGAGACGCCGGGGTGTT
CAATGTTCAAATGGCTGCGGCAGGCACCTCATGAGTACCCCCCCCCCCTA
AGGTCCACGAGGACTTGAGCAACCTCAACCTGTCGCGGGAAGACGGCGAT
AGCAACGGGGGGAGCGGGACCTCCGGGCTGCACGACATGCTGCTGGTGCT
CTGCAGCGAGCTGCACAAGCACCTGCGCCCCCGCATGTTCCACGGGACGG
ATATGGACACACTCTGCGAGGTGCGTTAGTAGTACTAGAGCTCTACTGTA
GTATTGCTAACTACTAGCTCTACACTACATGTAGTACATTAGCGTTTGTT
ACTCACTATTATGTACATTACTATCACTACCTACTACTACGCGGTGTACC
AAGTGTACCTGCGCCCCCGCATGTTCCCCGGGACGGACATGGACACACTC
TGCGAGGTGCGTTGCGTAAGCTACCTACGAGTACTACTGTAGTACTTCCA
ACTACTAGTATTGCTTCCTCCAGCCCGTATTATTGGACCTAGTTTTTGGA
GACCACCGTAGGCTCGCGAAACATAAAAGTTGAGATTTCCTGTTTTGTCT
GTGCTTTTATTAGGTCTTAAAGTGTCTGCGGTTAAAATCTCAAAGCAAAC
GGAGCCCTACAGCCGGGGCTAGCCCTGCTGCAGTACCGCCTCCAAATCAC
GCATTCCGGGTGCCCGTTTGGGGCCTCTGAGGGGTATTTTCTTGTCATTG
TGCTGTGTGGAGTCATTTATGTGGGGGGATATCCATAGGCATTGCTTGAC
AATGGCCCCACACTAGCCCAAGCCCTTCCTCCACTTCATCAGGGTCTTTC
TTGCCCCCCTTTTGGCCCTTTTTGGCACCGGCCCACCTGAGCCGGAACAG
GCGTTATTGCTGGGATGCGCCCAAAATTCTTTGCCTATGGCGCCTCGAGG
TGCTTCCGACGGGGCCCACTATGGCTCACGCACCCTGGCGGACAAGCCGA
GACGCGGGTACGACCCCCCGTGCGGCGTCACGAGCGCTTGGCGACGTTCT
CCCTGACCTCGACCCGCTCCAGCGGTATCGGAACAGAGCCATGTTGTCCC
CTTCACACGGCCCCGGAAGCCTCAAAGGCGCACGCGGTGGTCGTAGCCTG
CACCTCAGAGGGTATGTCCCTTGCGTTGCCCATCCTAGGACCCTGGCATG
CGACCTGTCTCGCAGAATCGCTCGCCGCGCTCGACCCTCACATGTCTGCG
CGCACGCCGAAAAGCCGCTTCACCTCCGAACACGGGGGGGGGTCTGAGCC
CCTTTTCTCGCTCCCCCGGCTTCGAGACCACCTAGCTCGAGGTACAGACC
TCCATTGCCCGCGCTGTTTGGCGCGATGGGGAGTTCCAGAGACAGGCTTT
ATGCCGATATATGGGTTTATATACCGTTCGGCACTGTAGCGCCGAGTCTG
AGTCCGTAAAAAAGTAGGTCCAATTATACGGGCTGGAGGCAGTACTACAT
AGTACTTCGAAGTACACTGCGTAGCTCGTTAGTAGTAGTACTTACAATGT
TATTACTTGTACACTGTGTAGCTCATTAGCAGTACTACTAGTACTACTAC
AGTAGTGCTCGAGTACACTGCGTAGCTCGTTCTTCACTAGATAAATTCTC
GTCTGCACATGCACACACTTGCACGCGCTCTTTGCGAGGTTTGCTTGAGA
CCTTTCTTCGTGATGTTTGCTCGCTTTCTCTCTTTGTTATCCCCCCTCCA
CGCCCTGCCTCCCTGCTTGCCTCCATCCCCCCCTCCCTCCCTCCCTCCCT
CCTTCCCTCCCTCCCCGCCTCCCCCCCTCCCTCCCTCCTTCCCTCCCTCC
CTCCCTCTCTCCCGCGCTCCCTCCCTCCCTCCCTCCCTGCTCCCTCCCTC
CCTCCCTCCCTCCCGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCCACCCTCCCCCCACCGCCCCCCTCCCCCTCCTCCCCGCCCCCCG
TGTCTGTGTGTCTGTAGATGGTGGGCGTAATCCGCGAGGAGATAGTGGAG
GACCACTACGGGGCGAGGGCAAGGGCCGGGCGGGTGGGGCAGGCTGCCAT
CGAGGGCGTCCTGCAGAAGGTGCGCGTCAGTTACTTGGCAGTTTGTCCCT
CAGAGGAGTTAACGATGCTATTTTAGTACCTGGATCAGTTCCACGGGACT
GAGTCACCGCGCGCCATCTCTGTCCGCTCACCATGTGCCGTCTTTGTCCC
CTCACTTGCCGTCTCCTGCTGCTGTGCTGGTCTGCCCGCCTGTCCTCTCA
CCGCACGCCATCTCTGTCTCCCCACTCGGCGTCTCCTGCTGCTGCTCTGC
CATTGGTCTGCCCGCCTGCTCTCGCGCGCGTTGCCTGCCCCGTCGCCGGT
TCACTAAAATCACTGGCAAGAGCACCAGTGCGAATATCAAAGACTGAGTT
ATTATGGAAGGGCCACACTGTTGAGGTCTTTCATGACGTGGCCTGCACCT
TGCCGTGTTTTTGTCATCAACTCATCCTGTGAATACTACAGTATGCACTG
TCCTCTCGCCCCGAGGGGGCGGTCCACATTGGCGCGCGCTCCTCTCCCCC
TCCACGCAGCTGGTGCAAGACTCTTTGTCATCAACTTGTCCTGTTCATGC
TATGCACTGTCCTCTCGCCCCTCCCCATGCACGCAGCTGGTGCAAGATTC
TCAGGACAAGCTCATCTGCTGCGTGTTTTGGCATCAACTTATGTATGTAT
ATATGTATTCACTTTGTCATCAACTTATCCTGCTAATACTATGTACTGTC
CTCTCCCTCGACACAGCTGGTGCAAGACTCTCAGGAGAAGCTCATCTACT
GCGCCGTCAAGCTCATTCAGGTGAGTACTTGGCCTGCTCACTGTACAGTA
CCTCTCCTACTGTACTGTACTGTACTGTACTTCCAGGAGATGCTCGTCTA
CTGCGCCGTCAAGCTCAATCAGGTAAGCACTTCCACATACCTTCGCTTGC
TCACTGTACGGTACTCGAGTACACCTCTCCTGCAGTACGAATTTCCCGTG
GCAAGCTATAAGGAAGGGCCACTGCTGAGGTCTTTAGTGACGTGGCCTGC
ACCTCGCCCTGTGTTGTTCCTGTTAGTACTGCACTCGTACTGTACTGTAC
TGTACTGTACTACGCTATACTACTCCTGAATGGGACTAGCGGTACTACAG
CAATCCGCACGATGAACCGCTCTTTTTCCACAGGACTGTTTCGGCCGTTT
CGTTGACAAATAGTGCGGCTTACACTTCTCTACTGTGTAGTGCCGTTCAT
CGGCACAAGGAGCCGTGATTTTATCGAATCGGGATTGTTAAGTGGACTGG
TAAGGGTACTGTACAGTGCAGTGCTTGAGGAGGTGTACAGTAGGTGTACG
GAAGTAGTTAATGTCATCTTCTTGCACAGGGATGTTTCATTCGACATTGT
AGCTGTGACTTGGGCTCTCTTGATGGGATGAGGTGTACAACACAGTAGTA
CTTCGAGGTACAGTACATTAGTACAATACAGTAGTGCAGTACAGTACGTA
GTACAATACAGTAGTACAGTACAGTAGTACAGTACAGTAGCGTGTCTCAC
TTGGCGCTCCTGGCCCGTCTGTTCTGTTGTGTCTGGCGCCCGCATGGTGC
GATTTTGTAGTTGGACATCACATCACATCACATCACACTCTCAATTATCA
TCTCAATTTTGATGTGATGTGCACTCTAGCGTACTGTAGTTGGACATCAC
ATCACATCACATCAACACCATCGAGTTGCCGTTTGATGTGGTACTGTGCG
CGAATATGCACTCTACCGCATTGTGGTTTGACGCCGCACACATCACACCA
CGGGGTCCTGCTCGCGCCCACGGCCCATCCTCCCCTGTCTTTCTTGCCTC
TCTCTGTCTGTCTGTATCTCTGTCTGTCTGTCTTGTCTCTCTCCCTCTCT
CTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GCTTGCCGCCCCTGCACCACCGCCTCCCCAAGGACGAGATCGAAGGCTTC
ACCCCCCGGCCAGAGCACCTCGACTACCCCGCCATACTCTCCCGCGCCCG
CGCGGCCTCCTTCTCCTCCTCCTCTGCCCCCCTTCCCTCCCGCCCCGGCG
GGGTCATCGCCCGACGTGGCGGACGCCTCTGCCACCGCCGCCGCTGCCGC
CGCCGCCTCCTCCTACGACACGTGGTACCCGCCGCTGCGCTCCACGCTCC
TTGTTCTGAGCAAGGTGTACCGCGCGGTGGACGTGGGGGTCTTTGAGGAC
CTGGCGCAGACTGCTGTAGCCGCCTGCACCACCGCGCTCAAGCGCGCCGC
TGCTGCCATTGCCGCCTCCTCCTCCTCCGCGGTCGCCGCCGCCGCCGCCG
CCGCTGCCAGGAGGCCCGGGGCCCGGGCTGGTAGCAGCACGGGTGGCGGT
GGCGGGGGTGGGGGTGGGGGCAGCGGCGGCAAGGAGGAGGAGGAGGGGGG
GGATGCGGCGGCGGGCCCGTTGGATGCACACCTGTTCCTGATCAAGCACC
TGCTCACGCTGAGGGAGCAGCTGACGCCCTTCGACGTCCGGTTCGCGCAC
GCGGACCGCAAGCTTAACTTTTCGTCCACTCGGTAAGCAGCGATGGAATA
TCTAGGCAAATCAACCTATTTATCGACAGTACTGATCTAGAGTACATATC
TCTTAATAGTCGATATTCGATAGTTTGACCCACACTAAATCCAAGTACTC
AGTAGAAACGTCACTCACAACATCAGTCGAGCCCGACAACTATCTACAGA
TCGATATTCCATCACTGTTGGCAAGTGGGTGGGTGGGTGGGTGGGTGTTG
GTGGGCAGGCGGCGGGTGTGGCATACCTGCTCTGCTTAAGTACAACGTTG
TCGTCGCAAGCTTAGCTTCTCGTCCGCTCGGTAGGCAGTGATGGAATATC
TAAGCAATCAACCTACTGTATTTATCGACAGTACTGATCTACTGTAGAGT
ACACATCTATCGAATGTCGACATTCGATTGTTTGACCCACACTAAATCCA
CGTACTCAGTTAGAAACGTCACCCACAAAATCAGTCGAGTCCGATAACTA
TCTACTGATCGATATTCCATCACTGTCGGTAAGTGGGTGCGTGGGTGGGT
GTTGGTGGGCAGGCGGCCGGGTGTGGCATACCGGTACCTGCGTACTCGAG
TACAACATTGTTGTTGCTGTCCTGGTGGTGATGGTAGTGGATTGGCGGCG
GTGGCGGTGGCGGCGGCGGCGGCGGCGGTTGTGTTCAACGAATAACGGTA
GTGTCACCCGCTCTGGCTGCACGATTGGCCACCGGTCGGTTAACCGGTTA
AACCAGGTAACTGGCACCGACCGGCCAAGACCGGCACCAGTTCACAACCC
TAGCCACTGCACAATGCTGCTGTGTTTGCTCAAGCCGCCGCCACTGCGGC
CGCTGATGTGATAATCACTAATACAAGAACACTCAATTCTTAAATGGGAC
AACCACTAATGAATACTCAATCTCACACACGCGCGATTGTACCTCGAAGC
ACACACGCGCGATTGTACCTCGAAGTACAATTTATATGAATCGCCGCTGT
GTTTGCTCAAGCCGCTGCCCCTGCGGCCGCTGGTGTGATGGCCGATGATG
CAGGTCCGCGCTGCGTCGGTTCTTGCGGCACACGCCCAGCCTGTTCCGCC
TGGACAGAGAGAACGCCCTGGTGGAGCTTACTGTGGACAGCCTGCCCACC
GTCGACGAGATACAGGCGAGTGTCTACGACTGCACATAGTGTACTGTACT
GTAGTGTGCTGTGGTGTAGTGTAGTGTAGTGTTGTACTGCAGTGTAGTGT
AGTGTACTGTAGTGTAGTGGAGTGTACTGTGCTATGTACTGCACTGCAGA
GAGAACGCGCTGGTGGAGCTTGCCGTGGACAGCCTGCCCACCGTAGACGA
GATACAGGTGAGTATTTCAACTGTAGTGTGGTGTGCGGTACTGTAGTGTA
GAAGTATGAAGAACTGTAGTGTACAGTAGTGTGTAGTTTAGTGTAGTGTA
GTGCAGTGTAGCGTAGTGTACTCGTACTGTACTACTGTACTGTGCTAACG
CGCTGGTGGAGCTTCTGGTGGACAGCCTGCCCACCGTAGACGAGATACAG
GCGAGTATCTCGACTGTAGTGTAGTGTACTGTACTGTAGTGTGCTGCAGT
GTAGTGTAGTATAGTGTACTTTGAAGTAGTGTACTGCAGTGTAGTGTAGT
GTAGTGTAGTGTACTGTGCTATGTACTGCACTGCAGAGAGAACGCGCTGG
TGGAGCTTACCATGGACAGCCTGCCCACCGTAGACGAGATACAGGTGAGT
ATTTACCACTGTACATAGTGAAGTACTGTAGTGTACTGTAGTGTACTGTA
GTGTACTGTACTGGACAGAGAGAACGCCTGGTGGAGCTCACTGTGGACAG
CCTGCCCACTGTGACGAGATACAGGCGAGTACCTACGACTGCACATAGTG
TACTGTACTGAACTGTAGTGTACTGTAGTGTACTGTAGTGTACTGTACAG
AGAGAACGCTGGTGGAGCTTGCTGTGGACAGCCTGCCCACCGTCGACGAG
ATACAGGCACTGTAGTGTACTGCAGTGTACTGTATTGTGCTGTAGTGTAC
TATTGCACCGCAGATACGTGCGTTGGAATCTATGCTTTTGAAACGAAGCT
CTCCCCGCATAATTCTTGCTACAGCCAACCTCTGCTTGTTAGGATGGCCG
TAGCCAGCCTCACCAACAAGGAGAGGTTGGCCATAGCCAGCCTCCAACAA
CAGAGGAAACAGTGCTCCATCCCATGGGGTCACCCACTGTGGTTTCACAC
ACATGAGATTGGATTCAAGTACCTTGCCAATAGGTTGTACTGACGCGAAT
CACTGCCCAACCCAAACTCCCCAATGCGTCTAGCCCGCGTGTCGTGCCCA
ACCCCAGGCACGGTTGGCACTTACCCCCTACATTGTGCCCTTTCAGGCCC
TTAATTAGAGGTAGAAGTAATTGGGCGTAATTAGACCTAGAATAAAGGCT
AATTAGGCCCTAATTAGCCTCTAAGTGCCAACCCTGACCCCAGGTGGACA
CCAGGTGCGACATAGAGCACCCTCAAGGGGGTAGTTAGCGGTAATTAGAC
CTAAAATGAAGGCTAATGGGCCCTAATTAACCTCTACGTGCCAACCCTGA
CCCCAGGTGGACGCCAAGCGTGACATAGAGACCACCCTCAAGGTGTCCAA
CCCAAACTCGCCAATACGTCTAGTAGCGCGCGTGGTGTCTAACCCACGTG
CCGTGTCGTGTCTAACCGCAGGTGGACGCCAAGCGCGACATGGAGAGCAC
CCTCAAGGGGACCTGCGACACCTTCATCGCCTGTGCCGCCGACGTCGTGG
CCTCCCCACTCCTCAGCTTTGCCAATAAGGCCGCAGCCTTCCGGGAGAAG
GACGGAGGGCTGGAGGACCTCAAAAGGCAGCCCTTCGCCAGCCCCGCGCG
GGCACAGGTGTGTTTGTGTGTGTGTGTGCATGTGTGATGTGATGTGATGT
GATGTGCACACAAAAGCACTGTTGTTTGACATCACATCACATAAGAAAAC
ATCGGTGTGTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT
GCGTGTGTATGTGTTTGTCAGGGTGTGTACGTGTGCGGGTGTGCGTGCGT
GTATGTGTGCGCGCGTGCGGGTGTGGGTGTATGTGTGCAGTATGTGTGTG
TGTGCGTTTCTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCGCGCGCA
CGTGTGCGTGTGCGCGCGTGCGGGTGTGCATGCGAGTGCGTGCGTGTGTG
TTTGTTAGGGTGTGTATGTGCATGTGTGTGCGTGTGTGTACTTTTGTGTG
CGTGTGTGCGGGTGTGGGTGTATGTGTGCAGTATGTGTGTGTGCGTGCAT
TTGTTGGTGTGCGTTTGTGTGTACATGGCGTGGGTGCCCATTACTTGCTA
TTTCCTATTCAGCCATCGGAGGACCGTGGTGCGCTCGCCCAATGCTACCT
CCAAGCAGTGATGGAATATCTAGCTAAATCAACCTACTACTAGCACTATA
AGCAAAAACACGGGGCGAGGGGGCGAAATCAACCTACTACTACTGTACTT
CGTAGTAGTTATCGACAGTACTGATCTACTAGTATATATCTATCGATAGT
CGATATTCGATAGTTTGACCCACACTACTTCGAAATATATCCAAGCAGTT
GCTGTACAGCAGTAGCGCCACCCACAATAAAGTAGGATCACCTCTATTTT
CCACTCGCTTCTGTTCTTCATACACAAAAATCAGTCGAGCCCGAAAACTA
TGTATCTACTGCACTGATCGATATTCCATCACTGATTGTAAACCGGCAGG
AGATGCTCTCCGCGGCTCTGTTCAGTGTCCTGGCCGCCACGCCGGAGGTG
GCCGTGCGCATGTCGCTCTACCTGGAGCAAGTACTTCGAAGTGCTGCGTT
TTGAAATGGCACTCGACGTGACCTGCCCTCTGAAACGCTGTACAGCAAAC
TGTACTGCACTGCACCTTTGACGTAACATCACGTCGCGCCGTTGCCCCGC
TCTCCCGGATACCCACTATGTAATACGAGAACACTCAAATCTCACACACG
TGCGATTGTACCTCGGTACAATTTATTTGAGTGGTCAGTCGTTACAATTT
GTTTGAGTGGTAGATAGGCAGTGAGTTCCAGGCCCCGTGCCAAAAGGCTC
GTCCCGAAACGGGACTCAACGAAGCCCTTCTTCCCTCATTTACATGAATC
ACCGCCCCGCTCTCCCGGCAGGAGATGCTCTCGGCGGCTCTGTTCAGTGT
GCTGGCGGCCACGCCGGAGGTGGCCTCTCGCATGTCGCTCTACCTGGAGA
ACGCGGCCACGGCGGGCATCCTCCTCCACCCCGTGCAGAGGAAGGTGGTG
GACGTGGCCAAGGACACCAGCGAGTTGCTGCAGCAGCTGCACCCTGCGGA
GGTGAGCACAGATACAATTGTACATAGCAGTGTAAATTGTATCTACAATC
GTACATAGCAGTGCAAATTGTATCTACAATTGTACATAGCAGTGTAAACT
GTATCTATCTCCAAGCACTCCCGAACGCATAGTATAGTAGGAATTACTGC
ATGCTTCAAAGGGCCAGTACTGGTGCTTGCCAGCGACCTGCTGCAGCAAC
TCCACCCAGAGGAGGTGAGCAGAGATACAGTTGTACATAGCAGTGTAAAT
TGTATCTATCTCCCGGAAGGTGGTGGACGTGGCCAGGGACACCAGCGACC
TGCTGCAGCAGCTGCACCCCGCCGAGGTGAGCACAGATACAATTGTACAT
AGCAGTGCAAGTTGTATCTATCTCGGAGGTGAGCAGAGATACAATTGTAC
ATAGCAGTGCAAATTGTATCTATCTCCAGGAAGGTGGTGGACGTGGCCAA
GGACACCAGCGACCTGCTGCAGCAGCTGCACCCTGCCGAGGAGAGCACAG
CGCCACAGCGCTGCTATGAATAATTGTACTCTATCTCCAAGCACTCCCGA
GCGCTTCCAAGCATAGTTGGGGAGGGGAAGGACGCCAGTTAGGCGGAGTG
GAACTCCTTTCATAGAGGGGTCACCTATGCAGGTGTGTGTATTTTCGGGC
CAGGGGCCCGTTCCGGCCCAAAATGTCTGTTCGTGGTGATGCTTTATGGC
CACATTCTGTGGTGCACAGCTCGCGACGCGCCCGGTGTCAACAGAAAGAT
CAAAATTGGCGGTACCCGCCACAAGTTCAAACACTGACACTGTGGCGCGA
GGTATCCCTCTTGCAAAATCAGTTTGCGCCTCGAGATTTGTGCACGAGTG
CGCGAGGGCTGCGAGCAAGCACCGCGGTATAGCCGGCAACAGTCACAGCC
TACTGCGGTAAGGGAGCTCCCCTCCCCTACACGCCATCTATGTATCTATA
TACTACGTACTATATATATCGATCTTTGTACTCACGTTGTGCTTGCCGTA
GTCCCGAGACCATTGACCACGATATATATGTATTCACATTGTGCTTGCCG
TAGTCCCGGGACCATTCCAGGCATAGTATAGTAGGAACTACTGCACGCTT
CAAAGTGCCAGGACTTGTACTTGGAGTATGTGGACAAAGCAGCACGTGCT
CTACAGTAGTTCGTTCGACGACGTACCCTACGCATGGTCTACCTACTTGC
TGTGCTAGACATAGATGTTTGCGGCGAAGACCAGGGACCCGCAGCTGCAG
CGGCTGCACCCTGCACAGGTGAGTACAGTGGCAGCACTGAAGGGTGAGTC
CAGTCCAGTACAGTACAGTACAGTTCCGTACAGCAGTTGCTATCCTGTAC
AGTACTGTACAGTACTGTACCTGTGTTGACATTTACCAACTGCGGTACTG
CAAAGTACAGTGGCAAGTACTGCACTGCACTACTGTACGAGTACTCGTAC
TACTGTACTGTGTACTGTACTGTACTACTGAGTAGCATGTAACCTGTGCG
GTTGCCGCACTCCCTCCTGCTCCTCCTCCTCCTCCTGCCCCCCCCCCCCC
CCCCCCCCTCCTCCTCCTCCTCCTCCTCATCTCCCCGACGGCGCACTTCA
GGACCTTCGGGAGGTGCTGTCACTCTTCTCGCAGCTCACGCAAGCTGTGC
TCAGCGCCGGGGGGGGCGACGGCGGCGTCGGTGGCGGCAGCGGCGCGGCC
GCAGATGCAGCTGCCAGTGCTGGCCGAGCGCAGCCCCCATCATGACCTGC
CCCGCCCGGCCTTGGCTGGTTGGGTTTGCGTGCTGCCTGGCACTTGCCCC
ATTGATAGAGATTCTTTGGTAGGGGCGCCTGCACAGCTGCTGCACTGTAG
CTGTACGATTACCCGTATCATCTCACTCTACTACTAGTAGTAAGTACTCG
AAGTAGCATCTTTGGGGGGGAACCCCCTAACAGGTTTAATGTGAGGGAAA
AGAGGCGGTGGCTATGCGCGTAGGACGGGCTTGCCACAACTTCAGCCCGC
GGCCGCCCTTGCAGACTGCAGAGTACTACAGTAATATGTACTGTACACTA
CTGTAGGCCTTGGAAGAGTGCCCGTGCGGGGCACGTAGGTATCCCGAACG
GAAGCGGTGTGCTGTACGATACAGTGCTATACAGTATAGTACTGTACAGT
ACAGTACAGTAGTGTCCAGTAGTACTGTAGCTTGCTGCGCTTCCTCCGCC
CTCCAAGGGCTCGTTCATCCCTTGGAGGAGGAGCAATGGACTTGCAAGGG
TCACGCACACAGCCGACATGTCCTTGACCATAGTCCCAACCTACCTACTC
GTACAGTACGCACGAAGTATCACAGTAGTCTGCTGTACTCCACCGCAGTA
CTACAGTAGAGTACTCTACTGTACTAGTCCTCGACACGTCCTTGACCGTA
GCTCAAACCTACCTGCTCGTACAGTACGATTACAGTAGTCTGCTGTACTC
CACTGCAGTACTAGAGGAAGGAAGTACTCTACTGTAGTATTAATAGGAAC
AACACGGGGGCGAGGTGCGGGCCACGTCACTAGAGACCTCAACAATGTAG
TAGTCCTCGAACGGGTAGGTACTTATTTATATTGTAACTGGAACTCGGTC
CCACCCCATGAGGTCCAGAGGGCCCCGCAATTATTGAGGGCGGGGCGGTC
CACGCGGGACGGAGTCCCCTGAGACCTGCGAGTCATCCGCTGCTGCGGTC
GTGGGATTCCATCGCCGGCTCGGCAAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:394589..409015-

>mRNA_S-ischiensis_contig9.20428.1 ID=mRNA_S-ischiensis_contig9.20428.1|Name=mRNA_S-ischiensis_contig9.20428.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig9:394589..409015- (Schizocladia ischiensis KU_0333)
ATGCTGCTGGTGCTCTGCAGCGAGCTGCACAAGCACCTGCGCCCCCGCAT
GTTCCACGGGACGGATATGGACACACTCTGCGAGATGCTGCTGGTGCTCT
GCAGCGAGCTGCACAAGCACCTGCGCCCCCGCATGTTCCACGGGACGGAT
ATGGACACACTCTGCGAGATGGTGGGCGTAATCCGCGAGGAGATAGTGGA
GGACCACTACGGGGCGAGGGCAAGGGCCGGGCGGGTGGGGCAGGCTGCCA
TCGAGGGCGTCCTGCAGAAGATGGTGGGCGTAATCCGCGAGGAGATAGTG
GAGGACCACTACGGGGCGAGGGCAAGGGCCGGGCGGGTGGGGCAGGCTGC
CATCGAGGGCGTCCTGCAGAAGCTGGTGCAAGACTCTCAGGAGAAGCTCA
TCTACTGCGCCGTCAAGCTCATTCAGCTGGTGCAAGACTCTCAGGAGAAG
CTCATCTACTGCGCCGTCAAGCTCATTCAGGACGAGATCGAAGGCTTCAC
CCCCCGGCCAGAGCACCTCGACTACCCCGCCATACTCTCCCGCGCCCGCG
CGGCCTCCTTCTCCTCCTCCTCTGCCCCCCTTCCCTCCCGCCCCGGCGGG
GTCATCGCCCGACGTGGCGGACGCCTCTGCCACCGCCGCCGCTGCCGCCG
CCGCCTCCTCCTACGACACGTGGTACCCGCCGCTGCGCTCCACGCTCCTT
GTTCTGAGCAAGGTGTACCGCGCGGTGGACGTGGGGGTCTTTGAGACGAG
ATCGAAGGCTTCACCCCCCGGCCAGAGCACCTCGACTACCCCGCCATACT
CTCCCGCGCCCGCGCGGCCTCCTTCTCCTCCTCCTCTGCCCCCCTTCCCT
CCCGCCCCGGCGGGGTCATCGCCCGACGTGGCGGACGCCTCTGCCACCGC
CGCCGCTGCCGCCGCCGCCTCCTCCTACGACACGTGGTACCCGCCGCTGC
GCTCCACGCTCCTTGTTCTGAGCAAGGTGTACCGCGCGGTGGACGTGGGG
GTCTTTGA
back to top