mRNA_S-ischiensis_contig9.20425.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20425.1
Unique NamemRNA_S-ischiensis_contig9.20425.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:385258..386376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-05_006180.1
Exons2
Model size529
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.1480749-CDS-S-ischiensis_contig9:385257..3854791622817377.1480749-CDS-S-ischiensis_contig9:385257..385479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 385258..385479 -
1695741067.0249457-CDS-S-ischiensis_contig9:385257..3854791695741067.0249457-CDS-S-ischiensis_contig9:385257..385479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 385258..385479 -
1622817377.15947-CDS-S-ischiensis_contig9:386070..3863761622817377.15947-CDS-S-ischiensis_contig9:386070..386376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 386071..386376 -
1695741067.0431452-CDS-S-ischiensis_contig9:386070..3863761695741067.0431452-CDS-S-ischiensis_contig9:386070..386376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 386071..386376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20425.1prot_S-ischiensis_contig9.20425.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 385258..386376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20425.1

>prot_S-ischiensis_contig9.20425.1 ID=prot_S-ischiensis_contig9.20425.1|Name=mRNA_S-ischiensis_contig9.20425.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
ATVAAAAAAAEEEEMPAAAALLQGEKLSYGSALRLGKTAFQVQPSGDLTL
EGDGGRLLWLAKGSRRRGNPLSPKRFLRRVLGKPKDGPCVACVVEVTAAG
DVELREKKKLLWSSHEHRRRKKRLPRPNQRGRGGPGGQPEPEGPGAVTGS
ESEGTGGAAPGPYELVLERNNVYIRR
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mRNA from alignment at S-ischiensis_contig9:385258..386376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20425.1 ID=mRNA_S-ischiensis_contig9.20425.1|Name=mRNA_S-ischiensis_contig9.20425.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1119bp|location=Sequence derived from alignment at S-ischiensis_contig9:385258..386376- (Schizocladia ischiensis KU_0333)
GCCACGGTGGCGGCGGCGGCGGCGGCAGCGGAGGAGGAGGAGATGCCGGC
CGCAGCGGCCCTGCTGCAAGGCGAGAAGCTCAGCTATGGCTCGGCCCTCC
GGCTGGGTAAAACCGCCTTCCAGGTTCAGCCGAGCGGGGACCTCACCCTG
GAAGGCGATGGGGGGCGCTTGCTCTGGCTGGCGAAGGGGTCTCGGCGTCG
GGGGAACCCCTTGTCGCCCAAACGCTTCCTGAGGAGGGTCCTGGGGAAGC
CCAAGGATGGACCGTGCGTGGCGTGCGTGGTGGAGGTAACAGCTGCGGGG
GATGTGGTGAGTGTTTTTTGTCGCGATCAGGGGGAGGGGAGAGGGGGCGA
GGGGGGGTGGTGGCAGTGGTGGCAGATCGGGGGGGGACGTGGTGGGTGTT
CTCCTGATCAGGGGGAGGGGAGAGGGGGGGGCGGGGGTGGTGGCAGTGGT
GGCGGGTCAGGGGGGGATGTGGTGAATGTGTTTTGCTCCTGGTCAGGGGG
AGGGGAGAGGGGGGGAGGGTGTGTCAGGGGGGTGCACTACGAGTCGACAC
ACACACATGTGCACACATCGCAATTCACTTTGCACTCGGATGTACTGTAG
TACTTACGTAGAGTACCTGTACGGCACACATGTACAGGGCTTGGAGGGAG
TGTCACTTCCAAATGCAGTACCTGGAAATACTTGAAGTGCCTATGAACCT
CTCCTCCTCTCTCTCCAACACATGCACACTCAACAAGACGCACACGCGCA
CGCACACAAAACAAGTTACTGCAATACCGTACATATGCACATTCATGCAC
ATACACACTTTCTCTCCCTCTCACATACACGACGCAAACGACCCGGTGCA
TCTGTCCCCCCCCCCCCCCCCCACACACATACCCCCCCCACGCACAGGAA
CTCCGCGAGAAGAAGAAGCTCCTGTGGTCCTCGCACGAGCACCGACGCCG
CAAAAAACGCCTCCCACGTCCGAATCAACGGGGGAGGGGCGGCCCGGGCG
GGCAGCCCGAGCCTGAGGGCCCGGGGGCGGTCACTGGCTCGGAGTCGGAG
GGAACGGGGGGGGCAGCACCCGGGCCGTATGAGCTCGTGCTGGAGCGCAA
CAACGTTTACATCCGGCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:385258..386376-

>mRNA_S-ischiensis_contig9.20425.1 ID=mRNA_S-ischiensis_contig9.20425.1|Name=mRNA_S-ischiensis_contig9.20425.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig9:385258..386376- (Schizocladia ischiensis KU_0333)
GCCACGGTGGCGGCGGCGGCGGCGGCAGCGGAGGAGGAGGAGATGCCGGC
CGCAGCGGCCCTGCTGCAAGGCGAGAAGCTCAGCTATGGCTCGGCCCTCC
GGCTGGGTAAAACCGCCTTCCAGGTTCAGCCGAGCGGGGACCTCACCCTG
GAAGGCGATGGGGGGCGCTTGCTCTGGCTGGCGAAGGGGTCTCGGCGTCG
GGGGAACCCCTTGTCGCCCAAACGCTTCCTGAGGAGGGTCCTGGGGAAGC
CCAAGGATGGACCGTGCGTGGCGTGCGTGGTGGAGGTAACAGCTGCGGGG
GATGTGGCCACGGTGGCGGCGGCGGCGGCGGCAGCGGAGGAGGAGGAGAT
GCCGGCCGCAGCGGCCCTGCTGCAAGGCGAGAAGCTCAGCTATGGCTCGG
CCCTCCGGCTGGGTAAAACCGCCTTCCAGGTTCAGCCGAGCGGGGACCTC
ACCCTGGAAGGCGATGGGGGGCGCTTGCTCTGGCTGGCGAAGGGGTCTCG
GCGTCGGGGGAACCCCTTGTCGCCCAAACGCTTCCTGAGGAGGGTCCTGG
GGAAGCCCAAGGATGGACCGTGCGTGGCGTGCGTGGTGGAGGTAACAGCT
GCGGGGGATGTGGAACTCCGCGAGAAGAAGAAGCTCCTGTGGTCCTCGCA
CGAGCACCGACGCCGCAAAAAACGCCTCCCACGTCCGAATCAACGGGGGA
GGGGCGGCCCGGGCGGGCAGCCCGAGCCTGAGGGCCCGGGGGCGGTCACT
GGCTCGGAGTCGGAGGGAACGGGGGGGGCAGCACCCGGGCCGTATGAGCT
CGTGCTGGAGCGCAACAACGTTTACATCCGGCGCGAACTCCGCGAGAAGA
AGAAGCTCCTGTGGTCCTCGCACGAGCACCGACGCCGCAAAAAACGCCTC
CCACGTCCGAATCAACGGGGGAGGGGCGGCCCGGGCGGGCAGCCCGAGCC
TGAGGGCCCGGGGGCGGTCACTGGCTCGGAGTCGGAGGGAACGGGGGGGG
CAGCACCCGGGCCGTATGAGCTCGTGCTGGAGCGCAACAACGTTTACATC
CGGCGC
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