mRNA_S-ischiensis_contig9.20424.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20424.1
Unique NamemRNA_S-ischiensis_contig9.20424.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:379673..381862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue3.5e-11
Seed eggNOG ortholog2880.D7FMP0
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size2190
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20424.1prot_S-ischiensis_contig9.20424.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 379704..380828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.3953557-UTR-S-ischiensis_contig9:379672..3797031622817370.3953557-UTR-S-ischiensis_contig9:379672..379703Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 379673..379703 +
1695741062.8455298-UTR-S-ischiensis_contig9:379672..3797031695741062.8455298-UTR-S-ischiensis_contig9:379672..379703Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 379673..379703 +
1622817370.4196618-UTR-S-ischiensis_contig9:380828..3818621622817370.4196618-UTR-S-ischiensis_contig9:380828..381862Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 380829..381862 +
1695741062.8703656-UTR-S-ischiensis_contig9:380828..3818621695741062.8703656-UTR-S-ischiensis_contig9:380828..381862Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 380829..381862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.4069195-CDS-S-ischiensis_contig9:379703..3808281622817370.4069195-CDS-S-ischiensis_contig9:379703..380828Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 379704..380828 +
1695741062.8610494-CDS-S-ischiensis_contig9:379703..3808281695741062.8610494-CDS-S-ischiensis_contig9:379703..380828Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 379704..380828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20424.1

>prot_S-ischiensis_contig9.20424.1 ID=prot_S-ischiensis_contig9.20424.1|Name=mRNA_S-ischiensis_contig9.20424.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=375bp
MDAGAPAPHHPLCEAGVALSLVLEYISSAGFLFVGGVSKAWRASWVSSRG
PVTSLAEAVASVPRLQWAVASGCYWNPRTCAKAAFGGHLDVLQWARADGC
RWNDFTCSQAAGAGNLRVLQWARANGCPADGYTCSRAAGGGHLEVLQWAR
ADGCPWNEHTCFRAAEAGHIEILQWAWENGCPWDEDTCHAAAKGGHLELL
QWAVANGCPWNENTSYRAASGGHLELLQWAWANGCPWDTDTCAGAAAAGH
LKMLQWARANGCPWNERTCHSAAVGGHLELLQWARANGCPWDSLTCSGAA
RAGHLEILQWARGDGCPWNEDTCYMAAEGGRLEILQWARANGCSWNYSTL
HAAEVWGHRDLFEWAVANGCPERD*
back to top

mRNA from alignment at S-ischiensis_contig9:379673..381862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20424.1 ID=mRNA_S-ischiensis_contig9.20424.1|Name=mRNA_S-ischiensis_contig9.20424.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2190bp|location=Sequence derived from alignment at S-ischiensis_contig9:379673..381862+ (Schizocladia ischiensis KU_0333)
AGTCGCTCGGGCGTCGCAGTGGTGGAGCAATATGGATGCAGGCGCCCCAG
CCCCACACCACCCCCTGTGCGAGGCCGGCGTCGCACTCTCCCTTGTCCTC
GAATACATCTCCAGCGCGGGGTTCCTTTTCGTGGGCGGGGTGTCCAAGGC
GTGGCGGGCCTCCTGGGTCAGCTCACGTGGCCCGGTCACGAGCTTGGCAG
AGGCCGTAGCTTCAGTGCCCCGCCTTCAATGGGCCGTGGCTAGTGGGTGT
TACTGGAACCCACGGACCTGCGCCAAAGCCGCTTTTGGGGGGCACCTCGA
CGTTCTGCAATGGGCGAGGGCTGACGGTTGCCGCTGGAACGACTTCACCT
GCTCTCAAGCCGCCGGGGCTGGGAACCTCCGCGTTCTGCAGTGGGCCAGA
GCTAACGGGTGCCCCGCCGACGGCTATACTTGCTCCAGGGCCGCCGGTGG
AGGGCACCTCGAGGTCCTGCAATGGGCAAGGGCTGATGGGTGCCCCTGGA
ACGAGCACACCTGCTTCAGGGCCGCGGAAGCGGGGCACATCGAGATTCTG
CAGTGGGCGTGGGAAAACGGTTGCCCCTGGGACGAAGACACCTGTCATGC
CGCCGCGAAAGGGGGACACCTCGAGCTTCTGCAGTGGGCCGTGGCGAACG
GGTGCCCCTGGAACGAAAACACTTCCTACAGGGCCGCGAGTGGGGGACAC
CTCGAGCTTCTGCAGTGGGCCTGGGCCAATGGGTGCCCGTGGGACACGGA
TACCTGCGCCGGCGCCGCGGCGGCGGGGCACCTCAAGATGCTGCAATGGG
CCAGGGCTAACGGGTGCCCCTGGAATGAACGCACCTGCCACAGTGCTGCG
GTAGGGGGGCACCTCGAGCTCCTCCAGTGGGCGAGGGCCAATGGGTGCCC
CTGGGACTCCCTCACCTGCTCTGGCGCCGCAAGAGCGGGGCACCTGGAGA
TTCTACAGTGGGCCAGGGGCGACGGGTGCCCCTGGAATGAAGACACCTGC
TACATGGCCGCCGAAGGGGGGCGCCTCGAGATTCTGCAGTGGGCACGGGC
CAATGGGTGTTCTTGGAATTACAGCACCTTGCATGCAGCCGAGGTATGGG
GCCATCGTGACTTGTTTGAGTGGGCCGTCGCGAACGGTTGTCCCGAGCGC
GATTGACGATCGCGGCCATGGTCTCTTCTCTACTATCGCGTACTGTACAG
CAGTATAGAGCACTTGTAGACTATCGAGATTTTATCCATGGTGTGGGTCC
TCTGTTGTACGAAGTGTGTAGTTTACTGTAGCAGGTACAAGTGAGCGCCC
GCCCACCCGGCCGGCCGCCCGGCCGCCAAGGTGTGTGGCCTGCATCCTGT
ACTAGGTAGTACATGGCAGCACTCGTGATGCACGTTGTTTGTTATTTGGG
CGCATGGGTGCTGCGAGGGTTTCAAAGAGGCATGTGTGGCCTGCATCCTG
TACTAGGTAGTACTTGAAGTACATGGCAGCATGGCCACGGTCGTGTCCGA
GTCGTCGGGCAGTCAGGATGGCAGTCAGGATGATGGCACCGTAACTACCA
CGCTCTGGTGAGCCCCACGAGCGAACTTGAGGGGGTAATTTTGTGTGCAA
GGCTCGCTTCTCTAGTCTAATTGAAGTTCTCTGCTGATCATATCAACTTG
AGGTCTCTTGACGTGGCAGGGGACCTGTTGTACTTGGCCAAGCACATTTT
TTGCGACAATACAAACAAGCGGGTGGGAAAGAATATAGGTGTCCCTTCTT
AAAGCGAGTTCAGGGCCCCACCCCCGGAAGCCCTTCTTTCACGCGCCTTC
ACATTTCATGGTCCGGGGGGGATCATGGGTCAATGTCAACACCTGGCGTG
CCAAGGCTCCCAGGTTGTTCTTGGCCGGGCACCTGGAAGACTATGTCGAG
ACAATTGCATTATAGGCCACTGCTTTCTGCTCCCCTGCACAGCTACTGCC
AGCCTTCTGGTTCTCTCTGCCTACCTACAGATGCTGCTAGCTCCCGAGCG
CTACAGTGCTTGTTTCCCCAGACTCTCCTCATTGTTATATGTTATGGGCT
ATAGTCATTGGTGTGCTACAAGTGCCTCCTGGCGCGACAGACGATACTCA
TAGGCACTGCCACTGGCTCTGCATGGTGGCCCAGGTGGAGCTCTATGCGT
AAAAATGGGTCACACACTCAATGGCATGAGGGAACCCGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:379673..381862+

>mRNA_S-ischiensis_contig9.20424.1 ID=mRNA_S-ischiensis_contig9.20424.1|Name=mRNA_S-ischiensis_contig9.20424.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2250bp|location=Sequence derived from alignment at S-ischiensis_contig9:379673..381862+ (Schizocladia ischiensis KU_0333)
ATGGATGCAGGCGCCCCAGCCCCACACCACCCCCTGTGCGAGGCCGGCGT
CGCACTCTCCCTTGTCCTCGAATACATCTCCAGCGCGGGGTTCCTTTTCG
TGGGCGGGGTGTCCAAGGCGTGGCGGGCCTCCTGGGTCAGCTCACGTGGC
CCGGTCACGAGCTTGGCAGAGGCCGTAGCTTCAGTGCCCCGCCTTCAATG
GGCCGTGGCTAGTGGGTGTTACTGGAACCCACGGACCTGCGCCAAAGCCG
CTTTTGGGGGGCACCTCGACGTTCTGCAATGGGCGAGGGCTGACGGTTGC
CGCTGGAACGACTTCACCTGCTCTCAAGCCGCCGGGGCTGGGAACCTCCG
CGTTCTGCAGTGGGCCAGAGCTAACGGGTGCCCCGCCGACGGCTATACTT
GCTCCAGGGCCGCCGGTGGAGGGCACCTCGAGGTCCTGCAATGGGCAAGG
GCTGATGGGTGCCCCTGGAACGAGCACACCTGCTTCAGGGCCGCGGAAGC
GGGGCACATCGAGATTCTGCAGTGGGCGTGGGAAAACGGTTGCCCCTGGG
ACGAAGACACCTGTCATGCCGCCGCGAAAGGGGGACACCTCGAGCTTCTG
CAGTGGGCCGTGGCGAACGGGTGCCCCTGGAACGAAAACACTTCCTACAG
GGCCGCGAGTGGGGGACACCTCGAGCTTCTGCAGTGGGCCTGGGCCAATG
GGTGCCCGTGGGACACGGATACCTGCGCCGGCGCCGCGGCGGCGGGGCAC
CTCAAGATGCTGCAATGGGCCAGGGCTAACGGGTGCCCCTGGAATGAACG
CACCTGCCACAGTGCTGCGGTAGGGGGGCACCTCGAGCTCCTCCAGTGGG
CGAGGGCCAATGGGTGCCCCTGGGACTCCCTCACCTGCTCTGGCGCCGCA
AGAGCGGGGCACCTGGAGATTCTACAGTGGGCCAGGGGCGACGGGTGCCC
CTGGAATGAAGACACCTGCTACATGGCCGCCGAAGGGGGGCGCCTCGAGA
TTCTGCAGTGGGCACGGGCCAATGGGTGTTCTTGGAATTACAGCACCTTG
CATGCAGCCGAGGTATGGGGCCATCGTGACTTGTTTGAGTGGGCCGTCGC
GAACGGTTGTCCCGAGCGCGATTGAATGGATGCAGGCGCCCCAGCCCCAC
ACCACCCCCTGTGCGAGGCCGGCGTCGCACTCTCCCTTGTCCTCGAATAC
ATCTCCAGCGCGGGGTTCCTTTTCGTGGGCGGGGTGTCCAAGGCGTGGCG
GGCCTCCTGGGTCAGCTCACGTGGCCCGGTCACGAGCTTGGCAGAGGCCG
TAGCTTCAGTGCCCCGCCTTCAATGGGCCGTGGCTAGTGGGTGTTACTGG
AACCCACGGACCTGCGCCAAAGCCGCTTTTGGGGGGCACCTCGACGTTCT
GCAATGGGCGAGGGCTGACGGTTGCCGCTGGAACGACTTCACCTGCTCTC
AAGCCGCCGGGGCTGGGAACCTCCGCGTTCTGCAGTGGGCCAGAGCTAAC
GGGTGCCCCGCCGACGGCTATACTTGCTCCAGGGCCGCCGGTGGAGGGCA
CCTCGAGGTCCTGCAATGGGCAAGGGCTGATGGGTGCCCCTGGAACGAGC
ACACCTGCTTCAGGGCCGCGGAAGCGGGGCACATCGAGATTCTGCAGTGG
GCGTGGGAAAACGGTTGCCCCTGGGACGAAGACACCTGTCATGCCGCCGC
GAAAGGGGGACACCTCGAGCTTCTGCAGTGGGCCGTGGCGAACGGGTGCC
CCTGGAACGAAAACACTTCCTACAGGGCCGCGAGTGGGGGACACCTCGAG
CTTCTGCAGTGGGCCTGGGCCAATGGGTGCCCGTGGGACACGGATACCTG
CGCCGGCGCCGCGGCGGCGGGGCACCTCAAGATGCTGCAATGGGCCAGGG
CTAACGGGTGCCCCTGGAATGAACGCACCTGCCACAGTGCTGCGGTAGGG
GGGCACCTCGAGCTCCTCCAGTGGGCGAGGGCCAATGGGTGCCCCTGGGA
CTCCCTCACCTGCTCTGGCGCCGCAAGAGCGGGGCACCTGGAGATTCTAC
AGTGGGCCAGGGGCGACGGGTGCCCCTGGAATGAAGACACCTGCTACATG
GCCGCCGAAGGGGGGCGCCTCGAGATTCTGCAGTGGGCACGGGCCAATGG
GTGTTCTTGGAATTACAGCACCTTGCATGCAGCCGAGGTATGGGGCCATC
GTGACTTGTTTGAGTGGGCCGTCGCGAACGGTTGTCCCGAGCGCGATTGA
back to top