mRNA_S-ischiensis_contig9.20421.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20421.1
Unique NamemRNA_S-ischiensis_contig9.20421.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A836C8Q1_9STRA (Epimerase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.240e-37
Identity = 71/129 (55.04%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF+  V + +A+  LI+PAV+GTL VL ACA   T+KRVVLTSS  A+  GW P+    ++EPET WS     D Y++SKTLAERAAW +VE++ A    G + FEL TINPGF++G ALS+NDA S
Sbjct:   79 ASPFILNVSDDDADT-LIKPAVDGTLRVLGACAAAGTIKRVVLTSSIAAIIAGWEPEAGKELQEPETHWSVAEKCDAYSKSKTLAERAAWDYVERKAA---AGESVFELTTINPGFVIGPALSANDATS 203          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A7S3LRI2_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LRI2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.600e-27
Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF  G  ++ AEE L +PA +GTLNVL A AQ   +KRVV+TSS  A+  G   Q   +  +PE  WSD+  AD Y++SKT+AE+AAW FVE++++    G   FEL T+NP F++G   SS  A S
Sbjct:   77 ASPFFVGCPDSEAEEKLFKPAKKGTLNVLRA-AQAAGVKRVVVTSSVAAITAGHPFQK--VYEKPEEMWSDIKKADNYSKSKTMAEKAAWDFVEEQRS---AGNEVFELATVNPTFVIGPPCSSGSATS 199          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A2R5G722_9STRA (Dihydroflavonol 4-reductase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G722_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.030e-26
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF  G   + AEE L +PA EGTL VL A     ++KRVVLTSS  A+  G +     L  +PE  WSD    +PY RSKT+AE+AAW FV++          CFEL  +NPG ++G  LSS DA S
Sbjct:   81 ASPFFMGCKPSEAEEKLYKPAREGTLTVLRAAKDAGSVKRVVLTSSIAAIMVGHTNAE--LEAQPEDLWSDEDKCEPYLRSKTMAEKAAWDFVDENPG-------CFELSVVNPGLVIGPPLSSGDAQS 200          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A8B7XV83_ACAPL (NADPH-dependent methylglyoxal reductase GRE2-like isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XV83_ACAPL)

HSP 1 Score: 103 bits (256), Expect = 1.300e-23
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF   V     E  LI PAV+GT NVL ACA+ PT+KRVVLTSS  AV        K      E+ W D+   DPY++SK LAE+AAW+FVE+ K+ G      FEL  INPG+++G  +S     S
Sbjct:   93 ASPFP--VSSPKDESELIIPAVDGTKNVLEACAKTPTVKRVVLTSSVVAVADFSKVSEKAAC---ESDWPDVDVLDPYSKSKMLAEKAAWSFVEELKSRGD---PTFELAVINPGYVMGPVISGTSCTS 213          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A2R5GQ62_9STRA (Protein kinase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ62_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.460e-23
Identity = 63/129 (48.84%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF+     A AEE L +PA EGTLNVL A  Q  T+KRVV+TSS  AV  G S +   L  +PE+ W+D     PY +SKT+AERAAW FVE           CFEL TI P  ++G  LS+  A+S
Sbjct:  401 ASPFLLACKPAEAEEKLYKPAREGTLNVLRAAKQAGTVKRVVVTSSMAAVAGGHSNEE--LEDKPESLWTDEDAVQPYAKSKTMAERAAWKFVEDNPG-------CFELSTICPTLVVGPPLSAAWASS 520          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A1Y2BMM4_9FUNG (NAD(P)-binding protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BMM4_9FUNG)

HSP 1 Score: 102 bits (253), Expect = 2.180e-23
Identity = 57/134 (42.54%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETK-----WSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF+  V EA+AE+ LI+PAV+GT NVL       ++K++VLTSS  A+  G  P  +  I  P  K     W+D+ +A PY RSKTLAE+AAWA +   +           + TI+PGF+ G  L  ND  S
Sbjct:   81 ASPFIIDVSEADAEQRLIKPAVDGTTNVLKVALATKSVKKIVLTSSIAAIMEG-RPDLEQQILGPNKKITAEEWTDVNHASPYPRSKTLAEKAAWALINSAETNPRN----IPMTTIHPGFVTGPTLCGNDGTS 209          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: UPI0018D6D4B6 (phenylacetaldehyde reductase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6D4B6)

HSP 1 Score: 102 bits (254), Expect = 3.510e-23
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF   V+    E  +I PAV+GT NVL AC +  T+KRVVLTSST AV        K      ET W D+   DPY++SK LAERAAW+++E+ K +G      FEL  INPG+++G  LS +   S
Sbjct:   98 ASPFP--VNNPKDENEVIVPAVDGTKNVLRACEKSSTVKRVVLTSSTAAVADFSRESEKAAC---ETDWPDVDALDPYSKSKMLAERAAWSYLEELKTKGS---PTFELAVINPGYVMGPILSGSSCTS 218          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: UPI001455AB2E (NADPH-dependent methylglyoxal reductase GRE2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455AB2E)

HSP 1 Score: 100 bits (248), Expect = 3.660e-23
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            ASPF T  +    E  LI PAVEGT NVL ACA   T+KRVVLTSS  ++   +S   +G   E  + W D+ + DPY++SK LAE+ AW F++K +  G      F+L  INPGF+LG  LS +   S
Sbjct:   34 ASPFPT--ENPKDESVLIIPAVEGTQNVLKACALSSTVKRVVLTSSVASIC-DFSKDFEGDANE--SNWPDVDSLDPYSKSKMLAEKEAWNFMDKMETRG---EKTFDLVVINPGFVLGPVLSGSSCTS 154          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: A0A5J4Z859_PORPP (Putative oxidoreductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z859_PORPP)

HSP 1 Score: 99.4 bits (246), Expect = 2.790e-22
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGE 360
            ASPFV  V     E+ LI PA EGTL VL A A++P++KRV+LTSS  ++ +G        I  P+  WS   N D YT+SKTLAE+AAW FV+  K         FELCTINP  ++GE
Sbjct:   85 ASPFVMRVKH---EDDLIVPAREGTLRVLRAAAKEPSVKRVILTSSCASIGYGHPDHKNERIYGPDD-WSVPANVDAYTKSKTLAEKAAWDFVKDNKDHQ------FELCTINPALVVGE 194          
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Match: B3S9S3_TRIAD (Epimerase domain-containing protein n=4 Tax=Trichoplax TaxID=10227 RepID=B3S9S3_TRIAD)

HSP 1 Score: 99.4 bits (246), Expect = 2.830e-22
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   40 EEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAVFFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEGGGGRACFELCTINPGFILGEALSSNDAAS 387
            E+ +I+PAV GTL+VL ACAQ  T+KRVVLTSS  AV  G+  +   L  E +  W+D + A PY +SKTLAE+AAW F+EK  +E       FE   INP  +LG  +  ++  S
Sbjct:   99 EDEIIKPAVNGTLSVLEACAQSGTVKRVVLTSSVAAVSNGFLWETGRLYNEKD--WTDPSQAAPYEKSKTLAEKAAWDFIEKLPSE-----QKFEFAVINPALVLGPVMQGSNCTS 207          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8Q1_9STRA2.240e-3755.04Epimerase domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3LRI2_9STRA4.600e-2748.06Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A2R5G722_9STRA2.030e-2647.29Dihydroflavonol 4-reductase n=1 Tax=Hondaea fermen... [more]
A0A8B7XV83_ACAPL1.300e-2347.29NADPH-dependent methylglyoxal reductase GRE2-like ... [more]
A0A2R5GQ62_9STRA1.460e-2348.84Protein kinase, putative n=1 Tax=Hondaea fermental... [more]
A0A1Y2BMM4_9FUNG2.180e-2342.54NAD(P)-binding protein n=1 Tax=Rhizoclosmatium glo... [more]
UPI0018D6D4B63.510e-2346.51phenylacetaldehyde reductase-like n=1 Tax=Patiria ... [more]
UPI001455AB2E3.660e-2345.74NADPH-dependent methylglyoxal reductase GRE2-like ... [more]
A0A5J4Z859_PORPP2.790e-2248.33Putative oxidoreductase n=1 Tax=Porphyridium purpu... [more]
B3S9S3_TRIAD2.830e-2246.55Epimerase domain-containing protein n=4 Tax=Tricho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:348524..350166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score101.3
Seed ortholog evalue3.5e-19
Seed eggNOG ortholog10228.TriadP31673
EggNOG free text desc.NAD(P)H-binding
EggNOG OGs38GV9@33154,3BI6K@33208,COG0451@1,KOG1502@2759
COG Functional cat.V
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size388
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.9783976-CDS-S-ischiensis_contig9:348524..3487131622817376.9783976-CDS-S-ischiensis_contig9:348524..348713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 348525..348713 -
1695741066.8872912-CDS-S-ischiensis_contig9:348524..3487131695741066.8872912-CDS-S-ischiensis_contig9:348524..348713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 348525..348713 -
1622817376.9919293-CDS-S-ischiensis_contig9:349968..3501661622817376.9919293-CDS-S-ischiensis_contig9:349968..350166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 349969..350166 -
1695741066.9055774-CDS-S-ischiensis_contig9:349968..3501661695741066.9055774-CDS-S-ischiensis_contig9:349968..350166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 349969..350166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20421.1prot_S-ischiensis_contig9.20421.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 348525..350166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20421.1

>prot_S-ischiensis_contig9.20421.1 ID=prot_S-ischiensis_contig9.20421.1|Name=mRNA_S-ischiensis_contig9.20421.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
ASPFVTGVDEANAEEALIRPAVEGTLNVLSACAQQPTLKRVVLTSSTGAV
FFGWSPQPKGLIREPETKWSDLTNADPYTRSKTLAERAAWAFVEKRKAEG
GGGRACFELCTINPGFILGEALSSNDAAS
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mRNA from alignment at S-ischiensis_contig9:348524..350166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20421.1 ID=mRNA_S-ischiensis_contig9.20421.1|Name=mRNA_S-ischiensis_contig9.20421.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1643bp|location=Sequence derived from alignment at S-ischiensis_contig9:348524..350166- (Schizocladia ischiensis KU_0333)
GCTTCTCCTTTCGTGACGGGAGTCGACGAGGCCAACGCTGAGGAGGCCCT CATCAGGCCGGCCGTGGAGGGCACATTGAACGTACTCTCAGCTTGTGCAC AACAGCCGACACTCAAACGGGTGGTCCTGACGTCCAGCACGGGTGCAGTG TTTTTCGGGTGGAGTCCTCAACCCAAAGGCCTGATCAGGGAGCCTGAGGT GGGTACCACCATCCGATGAAAGGGAAGCGATAGGCGGAGGGCATCCCTCA AGCATGCAAACTGCAGTGTTTGTAGATGGCATGTAGGGGAGGGGCACCTC CTACCGCGGTATTAACAGGAACAACACGGGGCGAGGTGCGGGCCACGTCA CTAGAGACCTCAGAATGCGCCTCTTCCGCAGCAGGCTGAAAACCCAGTGC TGGCTATGCCATGGTGGGTGCTCGTGGGCCTCGCGGTCATCAAGCGATTC TCAGAGGCGCAATTGGGACTTTGCAAATGGGATTACGCGATGCAGACCAC GGTCGAGGATGGATAGCGGAATAGAGTAGTACTGCAGCTACCAGTTCTTC CATCGCCGCTGGCGGCTTCGAAAACCACTCCGCACAGAGCGAGAATTTCC GGCGACATGGCACAAAGTGTGACCAGAGACACATACACGTGATGCGATAA AGCCCCGCCCGGCCTGACATGCACACGCCTGCACAGGTCACCCTCCAAGA AGGGAGTTCTACTCTGCCCAACGAGTCCTTCCCCTCCCCTGTAGCCTGCG TTGTAGTTGCGCATTTCGATTGTGGGTCCTCCAGGAGGGTGAGGGCCCGG TGCAACCAAGAGAGAGCATTGTACTGCCTGTACTGCTGTACATGCACATG TATATGTACTCACGTGGTGTTTGCCGTAGTCCCGAGACCATTGACCACGC GCCTAGGTCAAGACGGAGCAGCATGTGCAGTACGTACTTCATACATGTAC CGCACGTCAAGCACGCCGCAGCTATCGAATACTTTCAATAGCAAGGAAGC GACCGCGGTGGTGCATAAATATCCCCGTCGTTGAGCACACGGACACCATA TAGCCAATTGAACTCTGCCTTGATGCTTGCAACGACGGGGTCCATGTGCC GGCCCCCTACAGTATTGCAGCTGAGCACTGAAGGGCCTGCCTATCGCATA GTAGTTGCCTGGCGCATCACTACCTGCTTACTTAGCCATGCGGCGCAGAC CCTATGTACGGTACTTTGCACTTCCTTCCAAGTACCGCTGTAAACCGCTT CCCCATGAAAGTTTCCCCTGACGAGCTATAAGGGAGGGCCACTGCTGAGG TCTTTAGTGACGTGGCCCGCACCTCGCCCTGTGTTGTTCCTGTTAATTGT ATAAATATGTACTCACTGGTGCTTGCCGTAGTCCCGAGACCATTTTTCTT TGTTAGCGCCACTGTAAACCACGAATGCAACCCTCGCATCGCGCCGCCGA CAGACCAAGTGGAGCGACCTCACGAACGCGGACCCGTACACGCGCTCCAA AACCCTGGCGGAGAGGGCCGCCTGGGCGTTTGTAGAGAAGAGGAAGGCTG AGGGCGGCGGCGGGCGGGCCTGCTTCGAGCTGTGCACCATCAACCCCGGG TTTATCCTCGGGGAGGCCCTGAGCAGCAACGACGCGGCAAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:348524..350166-

>mRNA_S-ischiensis_contig9.20421.1 ID=mRNA_S-ischiensis_contig9.20421.1|Name=mRNA_S-ischiensis_contig9.20421.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig9:348524..350166- (Schizocladia ischiensis KU_0333)
GCTTCTCCTTTCGTGACGGGAGTCGACGAGGCCAACGCTGAGGAGGCCCT
CATCAGGCCGGCCGTGGAGGGCACATTGAACGTACTCTCAGCTTGTGCAC
AACAGCCGACACTCAAACGGGTGGTCCTGACGTCCAGCACGGGTGCAGTG
TTTTTCGGGTGGAGTCCTCAACCCAAAGGCCTGATCAGGGAGCCTGAGGC
TTCTCCTTTCGTGACGGGAGTCGACGAGGCCAACGCTGAGGAGGCCCTCA
TCAGGCCGGCCGTGGAGGGCACATTGAACGTACTCTCAGCTTGTGCACAA
CAGCCGACACTCAAACGGGTGGTCCTGACGTCCAGCACGGGTGCAGTGTT
TTTCGGGTGGAGTCCTCAACCCAAAGGCCTGATCAGGGAGCCTGAGACCA
AGTGGAGCGACCTCACGAACGCGGACCCGTACACGCGCTCCAAAACCCTG
GCGGAGAGGGCCGCCTGGGCGTTTGTAGAGAAGAGGAAGGCTGAGGGCGG
CGGCGGGCGGGCCTGCTTCGAGCTGTGCACCATCAACCCCGGGTTTATCC
TCGGGGAGGCCCTGAGCAGCAACGACGCGGCAAGCACCAAGTGGAGCGAC
CTCACGAACGCGGACCCGTACACGCGCTCCAAAACCCTGGCGGAGAGGGC
CGCCTGGGCGTTTGTAGAGAAGAGGAAGGCTGAGGGCGGCGGCGGGCGGG
CCTGCTTCGAGCTGTGCACCATCAACCCCGGGTTTATCCTCGGGGAGGCC
CTGAGCAGCAACGACGCGGCAAGC
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