mRNA_S-ischiensis_contig9.20417.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20417.1
Unique NamemRNA_S-ischiensis_contig9.20417.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:319516..320474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20417.1prot_S-ischiensis_contig9.20417.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 319773..320467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.1260085-UTR-S-ischiensis_contig9:319515..3197721622817363.1260085-UTR-S-ischiensis_contig9:319515..319772Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 319516..319772 -
1695741058.1132874-UTR-S-ischiensis_contig9:319515..3197721695741058.1132874-UTR-S-ischiensis_contig9:319515..319772Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 319516..319772 -
1622817363.1587024-UTR-S-ischiensis_contig9:320467..3204741622817363.1587024-UTR-S-ischiensis_contig9:320467..320474Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 320468..320474 -
1695741058.1473165-UTR-S-ischiensis_contig9:320467..3204741695741058.1473165-UTR-S-ischiensis_contig9:320467..320474Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 320468..320474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817363.1368275-CDS-S-ischiensis_contig9:319772..3198831622817363.1368275-CDS-S-ischiensis_contig9:319772..319883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 319773..319883 -
1695741058.1283643-CDS-S-ischiensis_contig9:319772..3198831695741058.1283643-CDS-S-ischiensis_contig9:319772..319883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 319773..319883 -
1622817363.1475823-CDS-S-ischiensis_contig9:320194..3204671622817363.1475823-CDS-S-ischiensis_contig9:320194..320467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 320195..320467 -
1695741058.1376514-CDS-S-ischiensis_contig9:320194..3204671695741058.1376514-CDS-S-ischiensis_contig9:320194..320467Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 320195..320467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20417.1

>prot_S-ischiensis_contig9.20417.1 ID=prot_S-ischiensis_contig9.20417.1|Name=mRNA_S-ischiensis_contig9.20417.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=128bp
MERGRSKAPQGRRAGGSGPYRIGSSVTKTAEVAPPSLILCPSADDTSVSS
CSTQCGARLLQLHGDPCAHQQRGEINMQQVATPGCCTFTPLLLSKQPPKT
VEQLLIRGVIAASTTTRSRVLSCPVQL*
back to top

mRNA from alignment at S-ischiensis_contig9:319516..320474-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20417.1 ID=mRNA_S-ischiensis_contig9.20417.1|Name=mRNA_S-ischiensis_contig9.20417.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=959bp|location=Sequence derived from alignment at S-ischiensis_contig9:319516..320474- (Schizocladia ischiensis KU_0333)
CACAGGCATGGAAAGAGGACGAAGCAAGGCCCCGCAGGGTCGCCGTGCAG
GTGGCTCAGGCCCGTACCGCATTGGGTCGAGCGTGACGAAGACGGCAGAG
GTTGCACCGCCATCGTTGATTTTGTGCCCGTCCGCGGACGACACATCCGT
TTCATCATGCTCGACCCAATGCGGCGCGCGCCTGCTCCAGCTGCACGGCG
ACCCCTGTGCCCACCAGCAGCGTGGCGAAATTAATATGCAGCAAGTGGCT
ACCCCGGGGTGCTGCACCTTCACACCGCTGGTGAGCAAGCCGTGCATAAA
AGCTAGTCTTTGTCAAGAGCTGGCAACGCCGTGACGGCCACATTGTGTCC
TGGTCTTCGACGCGCAAACGTCCCTGGTGACAATGCAAACATGTTGGTGC
CATGACCCACATGCGCGGACGTGCACTTACTCGTGCTTGCAGCCCCGCTC
ACTCTCGCTCACGGTCCCCTCTCCCTCCCCCTCTCTGCCCCCCTCCCTCC
CTCCCCGTGTGCCCCGCCCCCCCCGCCCACCTCTCCCTTGGGCCCCGCTC
GTTCCCACCCTCCCCTCCCCTTCCCCAATACTGTCCTGGAGCTTCTCTCA
AAGCAGCCCCCAAAGACCGTGGAGCAGCTACTGATCCGTGGGGTGATTGC
AGCGAGCACTACTACTCGTAGTAGAGTCCTGTCCTGTCCTGTACAATTGT
AGCACGCCGGTCCCCCGGCGGAGCCCGCCTAAGTGCAGCAGTTGATCCTA
GTAGGTACTTCCGGAAGCGCGTCACAGCCCTCATCGGCGTGCGCCCAGCA
GGCAGTTTTGTTGCAAGTGTTTTTGCCGTGAGGCAGTTCGGGAGAGAACT
TGCACGTGGCTGGCTCCACTGTAGCAGACTTGGTATAGTATGGGCGATGT
TGTCCAGCTTGGCACGTGAACAAGCTGCAAGCTCTCTTGTGTGGCGGGCG
GGTGGGGAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:319516..320474-

>mRNA_S-ischiensis_contig9.20417.1 ID=mRNA_S-ischiensis_contig9.20417.1|Name=mRNA_S-ischiensis_contig9.20417.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig9:319516..320474- (Schizocladia ischiensis KU_0333)
ATGGAAAGAGGACGAAGCAAGGCCCCGCAGGGTCGCCGTGCAGGTGGCTC
AGGCCCGTACCGCATTGGGTCGAGCGTGACGAAGACGGCAGAGGTTGCAC
CGCCATCGTTGATTTTGTGCCCGTCCGCGGACGACACATCCGTTTCATCA
TGCTCGACCCAATGCGGCGCGCGCCTGCTCCAGCTGCACGGCGACCCCTG
TGCCCACCAGCAGCGTGGCGAAATTAATATGCAGCAAGTGGCTACCCCGG
GGTGCTGCACCTTCACACCGCTGATGGAAAGAGGACGAAGCAAGGCCCCG
CAGGGTCGCCGTGCAGGTGGCTCAGGCCCGTACCGCATTGGGTCGAGCGT
GACGAAGACGGCAGAGGTTGCACCGCCATCGTTGATTTTGTGCCCGTCCG
CGGACGACACATCCGTTTCATCATGCTCGACCCAATGCGGCGCGCGCCTG
CTCCAGCTGCACGGCGACCCCTGTGCCCACCAGCAGCGTGGCGAAATTAA
TATGCAGCAAGTGGCTACCCCGGGGTGCTGCACCTTCACACCGCTGCTTC
TCTCAAAGCAGCCCCCAAAGACCGTGGAGCAGCTACTGATCCGTGGGGTG
ATTGCAGCGAGCACTACTACTCGTAGTAGAGTCCTGTCCTGTCCTGTACA
ATTGTAGCTTCTCTCAAAGCAGCCCCCAAAGACCGTGGAGCAGCTACTGA
TCCGTGGGGTGATTGCAGCGAGCACTACTACTCGTAGTAGAGTCCTGTCC
TGTCCTGTACAATTGTAG
back to top