mRNA_S-ischiensis_contig9.20416.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20416.1
Unique NamemRNA_S-ischiensis_contig9.20416.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: D7FUR6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR6_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 7.160e-110
Identity = 173/250 (69.20%), Postives = 197/250 (78.80%), Query Frame = 1
Query:    1 FLDRVLPTVAKALGL--EAGQGGISKAGRGVRAISLIKGVDSGPEGLTLISDKIRAGLGGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR 744
            FL RVLPTVA+ALGL    G  G++  GR +RA+SLIKGVD GP+GL LISD IR GL G VP+GLAD+DY  CR+ G  V A+ D  T   LF+RPTFRVTVVR AS TVELCGALKNVVALGAAFCDGLGYGGNTKAAIVR GLAEM++FA+        F+  AS+RAFLESCG+GDLMTTCYGASRNR+CAEMFARE G R WE LE EELGGMKLQGPSTA EAF +I+ +    +FPL++TIYR
Sbjct:  147 FLGRVLPTVAEALGLTKSGGTAGVAPGGRRIRAVSLIKGVDKGPDGLKLISDHIREGLCGAVPLGLADEDYASCRAAGLSVTADADTDTLRLLFNRPTFRVTVVRNASATVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQVFAQRLRCDASAFDATASSRAFLESCGIGDLMTTCYGASRNRKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 396          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 4.130e-105
Identity = 174/272 (63.97%), Postives = 196/272 (72.06%), Query Frame = 1
Query:    1 FLDRVLPTVAKALGL--EAGQGGISKAGRGVRAISLIKGVDSGPEGLTLISDKIRAGLGGLVPV----------------------GLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR 744
            FL RVLPTVA+ALGL    G  G +  GR +RA+SLIKGVD GP+GL LISD IR GL G VPV                      GLAD+DY  CR+ G  V A+ D  T   LF+RPTFRVTVVR AS TVELCGALKNVVALGAAFCDGLGYGGNTKAAIVR GLAEM++FA+        F+  AS+RAFLESCG+GDLMTTCYGASRNR+CAEMFARE G R WE LE EELGGMKLQGPSTA EAF +I+ +    +FPL++TIYR
Sbjct:  131 FLGRVLPTVAEALGLTKSGGNAGAAPGGRRIRAVSLIKGVDKGPDGLKLISDHIREGLCGAVPVSVLMGANVANEVARDELCESTLGLADEDYASCRAAGLSVTADADTDTLRLLFNRPTFRVTVVRDASATVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRTGLAEMQVFAQRLRCDASSFDATASSRAFLESCGIGDLMTTCYGASRNRKCAEMFARESGKRSWEQLEAEELGGMKLQGPSTAVEAFGVIKKKKCARKFPLLTTIYR 402          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A674G7S5_TAEGU (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Taeniopygia guttata TaxID=59729 RepID=A0A674G7S5_TAEGU)

HSP 1 Score: 186 bits (472), Expect = 1.590e-53
Identity = 117/245 (47.76%), Postives = 146/245 (59.59%), Query Frame = 1
Query:   82 GVRAISLIKGVDSGPEGLTLISDKIRAGL--------GGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            G   ISLIKG+D GP GL LISD IR  L        G  +   +AD+ +    ++GC     T    F  L   P FR+TVV   S TVELCGALKN+VA+GA FCDGL +G NTKAA++R GL EM  FA+  F  G       S   FLESCGV DL+TTCYG  RNR+ AE FAR G  +  E LE+E L G KLQGP T+ E +KI++ + + H+FPL +TIY+          F+ CL+
Sbjct:  135 GTFGISLIKGIDEGPHGLKLISDLIREQLKIEISVLMGANIAKEVADEKFCET-TIGCK--NETQGEIFKELMQTPNFRITVVLD-SDTVELCGALKNIVAVGAGFCDGLSFGDNTKAAVIRLGLMEMVAFAK-MFCKGP-----VSIATFLESCGVADLITTCYGG-RNRKVAEAFARTG--KSIEELEKEMLNGQKLQGPQTSAEVYKILKQKDMLHKFPLFTTIYKICYERRSIQDFITCLQ 366          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: UPI002026D7AE (LOW QUALITY PROTEIN: glycerol-3-phosphate dehydrogenase 1-like protein n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026D7AE)

HSP 1 Score: 185 bits (470), Expect = 1.750e-53
Identity = 119/251 (47.41%), Postives = 150/251 (59.76%), Query Frame = 1
Query:   64 ISKAGRGVRAISLIKGVDSGPEGLTLISDKIRAGL--------GGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            + K   G   ISLIKGVD GPEGL LISD IR  L        G  +   +AD+ +    ++GC    +   +TF  L   P FR+TVV    T VE+CGALKN+VA+GA FCDGLG+G NTKAA++R GL EM  FA+  F  G       S   FLESCGV DL+TTCYG  RNR+ AE FAR G  +  E LE+E L G KLQGP T+ E +KI++ + L ++FPL  +IY+          FV CL+
Sbjct:  106 LGKVKAGAIGISLIKGVDEGPEGLKLISDIIREKLKIEVSVLMGANIANEVADEKFCET-TIGCKNAEH--GKTFKELMQTPNFRITVVDDCDT-VEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMVAFAK-LFCKGS-----VSINTFLESCGVADLITTCYGG-RNRKVAEAFARSG--KTIEELEKEMLNGQKLQGPQTSAEVYKILKQKNLINKFPLFVSIYQICYEXKSVKDFVTCLQ 343          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A672TLV5_STRHB (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=10 Tax=Neognathae TaxID=8825 RepID=A0A672TLV5_STRHB)

HSP 1 Score: 185 bits (469), Expect = 2.470e-53
Identity = 115/245 (46.94%), Postives = 145/245 (59.18%), Query Frame = 1
Query:   82 GVRAISLIKGVDSGPEGLTLISDKIRAGL--------GGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            G   ISLIKG+D GPEGL LISD IR  L        G  +   +AD+ +    ++GC          F  L   P FR+TVV   S TVE+CGALKN+VA+GA FCDGLG+G NTKAA++R GL EM  FA+   R         S   FLESCGV DL+TTCYG  RNRR AE FAR G  +  + LE E L G KLQGP T+ E +KI++ + +  +FPL +T+Y+          F+ACL+
Sbjct:  112 GTFGISLIKGIDEGPEGLKLISDLIREKLKIEISVLMGANIAKEVADEKFCET-TIGCK--NEKQGEIFKELMQTPNFRITVVLD-SDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMVAFAKMFCRG------PVSTATFLESCGVADLITTCYGG-RNRRVAEAFARTG--KSIQELENEMLNGQKLQGPQTSAEVYKILKQKNMLDKFPLFTTVYKICYEGLSIQDFIACLQ 343          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A7L1MXQ1_RHICY (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1MXQ1_RHICY)

HSP 1 Score: 184 bits (466), Expect = 6.760e-53
Identity = 115/245 (46.94%), Postives = 145/245 (59.18%), Query Frame = 1
Query:   82 GVRAISLIKGVDSGPEGLTLISDKIRAGL--------GGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            G   ISLIKG+D GP GL LISD IR  L        G  +   +AD+ +    ++GC          F  L   P FR+TVV+  S TVE+CGALKN+VA+GA FCDGL +G NTKAA++R GL EM  FA+   R         S   FLESCGV DL+TTCYG  RNRR AE FAR G  +  E LE+E L G KLQGP T+ E +KI++ + + H+FPL +TIY+          F+ CL+
Sbjct:  112 GTFGISLIKGIDEGPGGLKLISDVIREKLKIEISVLMGANLAKEVADEKFCET-TIGCK--NEKQGEIFKELLQTPNFRITVVQD-SDTVEICGALKNIVAVGAGFCDGLQFGDNTKAAVIRLGLMEMVAFAKMFCRGS------VSIATFLESCGVADLITTCYGG-RNRRVAEAFARTG--KSIETLEKEILNGQKLQGPQTSAEVYKILKQKNVLHKFPLFTTIYKICYEGQSVQDFITCLQ 343          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: W7U0Y7_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Y7_9STRA)

HSP 1 Score: 185 bits (469), Expect = 9.220e-53
Identity = 117/258 (45.35%), Postives = 146/258 (56.59%), Query Frame = 1
Query:    1 FLDRVLPTVAKALGLEAGQGGISKAGRGVRAISLIKGVDSGPEGLTLISDKIRAGLGG-------LVPVGLADQ---DYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR 744
            FL  +LP ++  L             RG  A+SL+KG+D   EG  LI+D IR GLG        L+   +AD+   D     +LGC       A    +LF  PTFRV V       VELCGALKNVVAL A FCDGL +GGNTKAAI+R GL EMRLF +         +P      F ESCGV DL+TTCYG  RNR+CAE FAR GG   W+ +E+EELGG  LQGP T  +  K+++ +    RFPL  ++Y+
Sbjct:  152 FLPGLLPRISSCLH------------RGAMAVSLVKGLDFDDEGPVLITDMIREGLGEDVSEVCVLMGANVADEMARDEFCEATLGCPDPEGAGA-VLQQLFDCPTFRVEVTPDP-IGVELCGALKNVVALAAGFCDGLDWGGNTKAAIIRRGLEEMRLFCKL-------LHPSVRDMTFFESCGVADLITTCYGG-RNRKCAETFARAGGTMAWDEIEKEELGGQHLQGPQTTSKLHKVLEQKKWLSRFPLFRSVYQ 387          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A091FMA6_9AVES (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091FMA6_9AVES)

HSP 1 Score: 182 bits (463), Expect = 1.310e-52
Identity = 115/245 (46.94%), Postives = 145/245 (59.18%), Query Frame = 1
Query:   82 GVRAISLIKGVDSGPEGLTLISDKIRAGL--------GGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            G   ISLIKG+D GP+GL LISD IR  L        G  +   +AD+ +    ++GC          F  L   P FR+TVV   S TVE+CGALKN+VA+GA FCDGL +G NTKAA++R GL EM  FA+   R         S   FLESCGV DL+TTCYG  RNRR AE FAR G  +  E LE+E L G KLQGP T+ E +KI++ + +  +FPL +TIY+          F+ACL+
Sbjct:   98 GTFGISLIKGIDEGPDGLKLISDLIREKLKIEISVLMGANIAKEVADEQFCET-TIGCK--NKKQGEIFKELMQTPNFRITVVPD-SDTVEICGALKNIVAVGAGFCDGLKFGDNTKAAVIRLGLMEMVAFAKLFCRG------PVSIATFLESCGVADLITTCYGG-RNRRVAEAFARTG--KSIEELEKEMLNGQKLQGPQTSAEVYKILKQKNMLDKFPLFTTIYKICYEGQPIQEFIACLQ 329          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: A0A8J5XD68_DIALT (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XD68_DIALT)

HSP 1 Score: 183 bits (465), Expect = 2.240e-52
Identity = 110/232 (47.41%), Postives = 147/232 (63.36%), Query Frame = 1
Query:   70 KAGRGVRAISLIKGVDSGPEGLTLISDKIRAGLGG-----LVPVGLADQDYLRCRSLGCLVGANTDA--RTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR 744
            +  RG RA SLIKG++    G  LISD I+  +GG     L+   +A++   R       VG   +A  R + R+F  PTFRV+ ++  +  VELCGALKNVVALGA FCDGLG GGNTKAAI+R GL E   F +  F  G         + FLESCGV DL+TTC+G  RNR+CAE FA+ GG  GW+ +E+E L G KLQG  TA++  K+++ +G+ H+FPL+S I++
Sbjct:  147 RCARGARACSLIKGIEFDANGPVLISDIIKKKMGGMDVSVLMGANVANE-VARDEFCESTVGYRKEANGRAWQRVFDCPTFRVSKIKDVAG-VELCGALKNVVALGAGFCDGLGLGGNTKAAIIRVGLGETIQFCK-MFYGG------IKDQTFLESCGVADLVTTCFGG-RNRKCAEAFAKAGGKSGWDKIEKEMLNGQKLQGTITAQDVAKVLRKKGVAHKFPLLSKIHQ 368          
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Match: UPI0018656BB9 (glycerol-3-phosphate dehydrogenase 1-like protein n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018656BB9)

HSP 1 Score: 182 bits (462), Expect = 2.740e-52
Identity = 118/247 (47.77%), Postives = 148/247 (59.92%), Query Frame = 1
Query:   82 GVRAISLIKGVDSGPEGLTLISDKIRAGLGGLVPV--------GLADQDYLRCRSLGCLVGANT--DARTFFRLFHRPTFRVTVVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLFAENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREGGARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYR----------FVACLK 762
            G   ISLIKG+D GPEGL LISD IR  +G  V V         +AD+ +  C +    +GA    +   F  L   P FR+TVV+  S TVELCGALKN+VA+GA FCDGLG+G NTKAA++R GL EM  FA   F  G+      S+  FLESCGV DL+TTCYG  RNRR AE FA+   ++  E LE E L G KLQGP T+ E FKI+Q + +  +FPL   +Y+          F+ CL+
Sbjct:  112 GAIGISLIKGIDEGPEGLKLISDIIREKMGIDVSVLMGANIANEVADEKF--CETT---IGAKNHENGLIFKELLQTPNFRITVVK-ESDTVELCGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMVAFAR-MFCRGD-----VSSATFLESCGVADLITTCYGG-RNRRVAEAFAKS--SKSIEELEAEMLNGQKLQGPQTSAEVFKILQKRNMVEKFPLFVAVYQICFAGRAVNEFITCLQ 343          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR6_ECTSI7.160e-11069.20Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A6H5JZY6_9PHAE4.130e-10563.97Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A674G7S5_TAEGU1.590e-5347.76Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
UPI002026D7AE1.750e-5347.41LOW QUALITY PROTEIN: glycerol-3-phosphate dehydrog... [more]
A0A672TLV5_STRHB2.470e-5346.94Glycerol-3-phosphate dehydrogenase [NAD(+)] n=10 T... [more]
A0A7L1MXQ1_RHICY6.760e-5346.94Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
W7U0Y7_9STRA9.220e-5345.35Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A091FMA6_9AVES1.310e-5246.94Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
A0A8J5XD68_DIALT2.240e-5247.41Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
UPI0018656BB92.740e-5247.77glycerol-3-phosphate dehydrogenase 1-like protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:300949..304976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score189.1
Seed ortholog evalue2.5e-45
Seed eggNOG ortholog59894.ENSFALP00000014123
Preferred nameGpdh
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
GOsGO:0003674,GO:0003824,GO:0004367,GO:0004368,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006067,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006950,GO:0006970,GO:0006972,GO:0006973,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0016901,GO:0016999,GO:0017144,GO:0019725,GO:0030016,GO:0030017,GO:0030018,GO:0030534,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0033554,GO:0034308,GO:0036296,GO:0042592,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0046486,GO:0050896,GO:0051716,GO:0055093,GO:0055114,GO:0065007,GO:0065008,GO:0070482,GO:0071214,GO:0071470,GO:0071474,GO:0071704,GO:0099080,GO:0099081,GO:0099512,GO:0104004,GO:1901615
EggNOG free text desc.Glycerol-3-phosphate dehydrogenase NAD(
EggNOG OGs38E7F@33154,3BCI8@33208,3CVH2@33213,47ZP4@7711,48VII@7742,4GTPJ@8782,COG0240@1,KOG2711@2759
EC1.1.1.8
COG Functional cat.C
Best tax levelAves
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20416.1prot_S-ischiensis_contig9.20416.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 300949..304976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.699257-CDS-S-ischiensis_contig9:300948..3010591622817376.699257-CDS-S-ischiensis_contig9:300948..301059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 300949..301059 +
1695741066.693878-CDS-S-ischiensis_contig9:300948..3010591695741066.693878-CDS-S-ischiensis_contig9:300948..301059Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 300949..301059 +
1622817376.7134864-CDS-S-ischiensis_contig9:302181..3022531622817376.7134864-CDS-S-ischiensis_contig9:302181..302253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 302182..302253 +
1695741066.7116354-CDS-S-ischiensis_contig9:302181..3022531695741066.7116354-CDS-S-ischiensis_contig9:302181..302253Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 302182..302253 +
1622817376.7267184-CDS-S-ischiensis_contig9:303105..3032221622817376.7267184-CDS-S-ischiensis_contig9:303105..303222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303106..303222 +
1695741066.7229433-CDS-S-ischiensis_contig9:303105..3032221695741066.7229433-CDS-S-ischiensis_contig9:303105..303222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303106..303222 +
1622817376.7416756-CDS-S-ischiensis_contig9:303502..3036601622817376.7416756-CDS-S-ischiensis_contig9:303502..303660Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303503..303660 +
1695741066.7320237-CDS-S-ischiensis_contig9:303502..3036601695741066.7320237-CDS-S-ischiensis_contig9:303502..303660Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303503..303660 +
1622817376.7567673-CDS-S-ischiensis_contig9:303903..3040171622817376.7567673-CDS-S-ischiensis_contig9:303903..304017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303904..304017 +
1695741066.744132-CDS-S-ischiensis_contig9:303903..3040171695741066.744132-CDS-S-ischiensis_contig9:303903..304017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 303904..304017 +
1622817376.771179-CDS-S-ischiensis_contig9:304783..3049761622817376.771179-CDS-S-ischiensis_contig9:304783..304976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 304784..304976 +
1695741066.7566872-CDS-S-ischiensis_contig9:304783..3049761695741066.7566872-CDS-S-ischiensis_contig9:304783..304976Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 304784..304976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20416.1

>prot_S-ischiensis_contig9.20416.1 ID=prot_S-ischiensis_contig9.20416.1|Name=mRNA_S-ischiensis_contig9.20416.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=255bp
FLDRVLPTVAKALGLEAGQGGISKAGRGVRAISLIKGVDSGPEGLTLISD
KIRAGLGGLVPVGLADQDYLRCRSLGCLVGANTDARTFFRLFHRPTFRVT
VVRGASTTVELCGALKNVVALGAAFCDGLGYGGNTKAAIVRAGLAEMRLF
AENQFRSGEEFNPQASARAFLESCGVGDLMTTCYGASRNRRCAEMFAREG
GARGWEVLEREELGGMKLQGPSTAEEAFKIIQAQGLHHRFPLISTIYRFV
ACLK*
back to top

mRNA from alignment at S-ischiensis_contig9:300949..304976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20416.1 ID=mRNA_S-ischiensis_contig9.20416.1|Name=mRNA_S-ischiensis_contig9.20416.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4028bp|location=Sequence derived from alignment at S-ischiensis_contig9:300949..304976+ (Schizocladia ischiensis KU_0333)
TTTCTGGACCGTGTGCTCCCCACAGTGGCAAAGGCACTGGGTCTGGAGGC GGGCCAGGGTGGGATTTCCAAGGCTGGAAGGGGTGTGCGGGCCATATCCT TGATCAAGGGGGTGAGTGGACACGTGTGCGTTCGGTATGCCATGACGTAC TACTGTACTCGAGTACACGTAGTAGTCCATTGCCAAGTTTAGCGCCACAA CTCTCTCAACACCGCTTCGTCTCCGTCACATGCCGGCAAGCACTGCTGTA CTGCTATGCACGCTCTACTATGTACCAGAAATACTTCGAAGTGCGCATGT ACAGTACTGGTGTTAGAGAACAACACAAGCCAGGTGCGGACAACATCACC AAAAGTAGTACTTCGAAGTAGTAGTACCAACCTCAACGGTGGCAACGTCC TTCCTCTGCTGGCTCACCTGGAGGGGCAAAGCTGAGGTGGTGGTCATGGA AGAGGAAAAGAGGAAGCAAGTGACACCCCCGCCCCTTCCTGCATCCCTTG CACCTGTGAGTCTACTGCTGTAGTTCTACTGTAGCAGTTGATGATGTGTT GTACTAGTAGTTGATGATGTGTTGCCTGCGGTGACAAGTAACTGAGACAC GAGCCGTAACCAGCCTCCCCGACAACAGAGGAACCTGCGCTCCGTCGCAG CAGGGTCACCTTCGTGGGATGCACGGTCAATAGCACACTCGTACATCACA CCGCCACCCCACTGGGGGGCACGTGGCCAGCGGTAGCTGGCCATTTTATG ACAGGCAGCTACTCCTACTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTC CTCCTCCCCGTCCACCTCCCCCTCCTCGTTCCCCCCCCTTCCCCACACAT ATTTCCCCTGGCGAGCTATAAGGAAGGGCCACTGCCGAGGTCTTGGTGAC ATGGCTTGCACCTTGACATGGCTTGTTCCTGTTAATACGACCGCTGGCCA TTGTACGACACGCAGCTAATGAAAGAACACCCACACGCACACCCCTGTTC ACGCCCAGGGTTGGCACTCAACCCCTAAGCAGTGCCCCTTTAGGCCCGTA ATTAGAGGTAGTTAGACCTATATTAAAGTCTATTTAGGCCCTAATGAACC TCCAAATGCCAACCCTGTTCGCGCCAGGTGGACAGCGGTCCAGAGGGGCT GACCCTGATATTGAAAACCGACACACCCTAACTTAAAACCTCCCCCACCC TAACCAAACCCTAACCGCAACTTTTCCCGCCAGGTGGACAGCGGTCCAGA GGGGCTGACCCTCATATCGGACAAGATCAGGGCAGGCCTGGGGGGGCTGG TGCCGGTGTCCTGCCTGATGGGCGCCAACGTTGCCAGCGAGGTGGCCAAG GACGAGTTCTGCGAGACCACTGTGAGTAGTACCTTTACAATTTATATGAG AACACTCAATTCTTACAGTAGATGGCACAACACCTCAGTAATACGAGAAC ACTCAGGGTGCCAACGTTGCCAGCGAGGTTACCAAGGACGAGTTCTGCGA GACCACGGTGAGTAGAGCTCTATGTGATAATCACTAATACAAAGTATGAG AACACGCAATTCTTAAATGGGACAACTACTACAGCAATACGAGAACACTC AGGGTGCCAACGTTGCCAGTGAGGTGGCCACGGACGAGTTCTGCGAGACC ACTGAGTGATGATCACTAGTATGGGAACACTCCATTCTTAACTACTCACA CGAGAACACTCCTTCTCACACACGTGCGATTCTACCTCATTACAATGTAT ATGAATCACCACTGTGAGTCCCAGTACCGCTACCCAGAGTGGCCCCAAGC CGCCTGCATGTCTGGGATCTCCACCCGTGTGCCTTTGTGTCTGTCTGTGC GCCTTCTGTCCACCTGTGTGCCTGCCTTCAGCCCTTGAGGACTACTACTG TTGTACTTGGAAGCATTACCTATCCGGGCACAGTACACTGTGGGCGATGA TTGCGTTTGTACTTAGGGACCAGTATGCCGTCTTTTTCCGATGGGAGTGT TTTCTGTGAATGTTGATGTCGTCTTTTTCTGATGGGAGTGTTTTCTGTGA ATGTCGATGGTTGTTTTCCCTTCTGATGAAGTGTTTAATGTGATTGTTGA TGGTTGTTCCCTTCTCATGAAGTGTTTAATGTGGATGTTGATGGTTGTCC CCTGCAGGTGGGGCTGGCGGACCAGGACTACCTCCGCTGCCGCTCCTTGG GGTGCTTGGTGGGCGCCAACACCGACGCCCGCACCTTCTTCAGGCTCTTC CACCGCCCTACATTCCGGGTCACGGTGAGTATGTACACTAGCACTACTGT AGCTCCTCTTCCCGTCCTCCTCCCCCTGATTTGCGTTCTTCTGTGCTGCG AGAAAAGGCGGCCCACTCTTGAGGCCAGGCTACAAGTACCATCCCGCGCC GGGACCGCTGCCATATACAGTGTAACGTTTAGTTCTTGTGGCACTTTTAC ATCATCCTCCAGGGGCTAGGTAGCTTGCATAGGCCAAAGCCACACGCTGC AGCTGCGAGTAGAAGCGTGACCACGAACTTAGCCCTCATCCATGCCTGAC CCAGGTGGTGAGGGGCGCGTCGACGACGGTGGAGCTGTGCGGGGCGTTGA AGAACGTGGTAGCCCTGGGGGCGGCCTTCTGTGACGGCCTGGGCTACGGG GGCAACACCAAGGCCGCCATTGTGCGCGCGGGCCTGGCTGAGATGCGTCT CTTTGCGGAGAAGTGAGTGCCTGGATTTGCGTGCACGTTGCTCATGTTTG TGTGTGTGTGTATGTGTGATTTCTTAATCCAAAGTGGCACAAGCCTACTC TAACCTAAGCGTTGCTTGATATCAACACCTACCGTAGCCCGCCTGAAACT GTACAACTTGTACCTGGGAGTATTTGCAATGTTGTAAGCATGCAATCTTC TGCTCCTGAAGTGAAGTCAACAGGATGAATACTTGCACTTGGACGGCAGG TTCAGCCAGTTCCGTTCAGGAGAGGAGTTCAACCCCCAGGCGTCTGCACG GGCCTTCCTGGAGAGCTGTGGGGTGGGGGATTTGATGACCACCTGCTATG GTGCCAGCCGGAACCGCAGGTGTGTGTATGTGTGTGTGTTTTTGAAGTGC TTTGAAGTACAGTAGTGTATAGGCCTCGAACGAGGCGCGGGGTCCATGGT CTCGGGACTACGACGAGCACCACGTGAGTACATATATATATATATAGGCA CAGCAGTACTGTGCTGTGGGGTGGGGGATTTGATGGCCACCTGCGTTGGC GCCAGCCGGAACCGCAGTGTGTGTGTGTGTGTGTGTTTGAAGTGCGTTGA GGCACAGTAGTGCATAGGTAGAGCACTTAGTACTGTACTGTACGAGTAGT CGTTGAGGTTGTTACTGCTGTACTGTATGTGTGTGTGAAGTGCTTTGGAG TACAGTAGTGTAAAGGTACGGTAGTACTGTACTGTACAGTATTTGTTTAG TTTGTTACTTTACTTGTACGGCTGATATGTTTTTTTTGTTTTACGTGGAA CCACGAGCACACCACCACCATGAATTACAACTGCGACAAGAATTACTTGT AAGTATCAGTCCCATACAAGCATGGCCACCACAGTTGCAAGCGTACAGTG CAACAAAGGACGTACCAAACAAAAGACGTACCGCGCCGCCCGCGGCCGTA TCGTTGCTCTTCTCTGGTCTGGCAAAATCTGTTGCGACCTCTGGTCTTTA CAGCAGGTACCCTGCACCCTGTCAGGTGGGAAAAAAACTACAAACAGCAC TGGCGAAACACGCAGCACGAAACTCCTGCAACACCGCCATGTCCACCTAC TGCGCTGTACTGAACTGTACTGTACCACGGAACAGGTGTGCGGAAATGTT TGCCAGGGAGGGGGGCGCTCGCGGCTGGGAGGTTCTGGAGCGGGAGGAGC TTGGCGGCATGAAGCTGCAGGGGCCCAGCACCGCAGAAGAGGCCTTCAAG ATCATTCAGGCACAGGGGCTGCATCACCGCTTCCCCCTCATCAGCACCAT CTACAGGTTCGTTGCTTGCTTGAAGTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:300949..304976+

>mRNA_S-ischiensis_contig9.20416.1 ID=mRNA_S-ischiensis_contig9.20416.1|Name=mRNA_S-ischiensis_contig9.20416.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1530bp|location=Sequence derived from alignment at S-ischiensis_contig9:300949..304976+ (Schizocladia ischiensis KU_0333)
TTTCTGGACCGTGTGCTCCCCACAGTGGCAAAGGCACTGGGTCTGGAGGC
GGGCCAGGGTGGGATTTCCAAGGCTGGAAGGGGTGTGCGGGCCATATCCT
TGATCAAGGGGTTTCTGGACCGTGTGCTCCCCACAGTGGCAAAGGCACTG
GGTCTGGAGGCGGGCCAGGGTGGGATTTCCAAGGCTGGAAGGGGTGTGCG
GGCCATATCCTTGATCAAGGGGGTGGACAGCGGTCCAGAGGGGCTGACCC
TCATATCGGACAAGATCAGGGCAGGCCTGGGGGGGCTGGTGCCGGTGGAC
AGCGGTCCAGAGGGGCTGACCCTCATATCGGACAAGATCAGGGCAGGCCT
GGGGGGGCTGGTGCCGGTGGGGCTGGCGGACCAGGACTACCTCCGCTGCC
GCTCCTTGGGGTGCTTGGTGGGCGCCAACACCGACGCCCGCACCTTCTTC
AGGCTCTTCCACCGCCCTACATTCCGGGTCACGGTGGGGCTGGCGGACCA
GGACTACCTCCGCTGCCGCTCCTTGGGGTGCTTGGTGGGCGCCAACACCG
ACGCCCGCACCTTCTTCAGGCTCTTCCACCGCCCTACATTCCGGGTCACG
GTGGTGAGGGGCGCGTCGACGACGGTGGAGCTGTGCGGGGCGTTGAAGAA
CGTGGTAGCCCTGGGGGCGGCCTTCTGTGACGGCCTGGGCTACGGGGGCA
ACACCAAGGCCGCCATTGTGCGCGCGGGCCTGGCTGAGATGCGTCTCTTT
GCGGAGAAGTGGTGAGGGGCGCGTCGACGACGGTGGAGCTGTGCGGGGCG
TTGAAGAACGTGGTAGCCCTGGGGGCGGCCTTCTGTGACGGCCTGGGCTA
CGGGGGCAACACCAAGGCCGCCATTGTGCGCGCGGGCCTGGCTGAGATGC
GTCTCTTTGCGGAGAACCAGTTCCGTTCAGGAGAGGAGTTCAACCCCCAG
GCGTCTGCACGGGCCTTCCTGGAGAGCTGTGGGGTGGGGGATTTGATGAC
CACCTGCTATGGTGCCAGCCGGAACCGCAGCCAGTTCCGTTCAGGAGAGG
AGTTCAACCCCCAGGCGTCTGCACGGGCCTTCCTGGAGAGCTGTGGGGTG
GGGGATTTGATGACCACCTGCTATGGTGCCAGCCGGAACCGCAGGTGTGC
GGAAATGTTTGCCAGGGAGGGGGGCGCTCGCGGCTGGGAGGTTCTGGAGC
GGGAGGAGCTTGGCGGCATGAAGCTGCAGGGGCCCAGCACCGCAGAAGAG
GCCTTCAAGATCATTCAGGCACAGGGGCTGCATCACCGCTTCCCCCTCAT
CAGCACCATCTACAGGTTCGTTGCTTGCTTGAAGTAAGTGTGCGGAAATG
TTTGCCAGGGAGGGGGGCGCTCGCGGCTGGGAGGTTCTGGAGCGGGAGGA
GCTTGGCGGCATGAAGCTGCAGGGGCCCAGCACCGCAGAAGAGGCCTTCA
AGATCATTCAGGCACAGGGGCTGCATCACCGCTTCCCCCTCATCAGCACC
ATCTACAGGTTCGTTGCTTGCTTGAAGTAA
back to top