mRNA_S-ischiensis_contig9.20410.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20410.1
Unique NamemRNA_S-ischiensis_contig9.20410.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:259590..265033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006590.1
Exons7
Model size1168
Cds size1167
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.987791-CDS-S-ischiensis_contig9:259589..2596691622817362.987791-CDS-S-ischiensis_contig9:259589..259669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 259590..259669 -
1695741058.0215094-CDS-S-ischiensis_contig9:259589..2596691695741058.0215094-CDS-S-ischiensis_contig9:259589..259669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 259590..259669 -
1622817362.9997776-CDS-S-ischiensis_contig9:260186..2603041622817362.9997776-CDS-S-ischiensis_contig9:260186..260304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 260187..260304 -
1695741058.0413802-CDS-S-ischiensis_contig9:260186..2603041695741058.0413802-CDS-S-ischiensis_contig9:260186..260304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 260187..260304 -
1622817363.0113575-CDS-S-ischiensis_contig9:261202..2613831622817363.0113575-CDS-S-ischiensis_contig9:261202..261383Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 261203..261383 -
1695741058.0580492-CDS-S-ischiensis_contig9:261202..2613831695741058.0580492-CDS-S-ischiensis_contig9:261202..261383Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 261203..261383 -
1622817363.0242882-CDS-S-ischiensis_contig9:261976..2623191622817363.0242882-CDS-S-ischiensis_contig9:261976..262319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 261977..262319 -
1695741058.068782-CDS-S-ischiensis_contig9:261976..2623191695741058.068782-CDS-S-ischiensis_contig9:261976..262319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 261977..262319 -
1622817363.0395195-CDS-S-ischiensis_contig9:262918..2630631622817363.0395195-CDS-S-ischiensis_contig9:262918..263063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 262919..263063 -
1695741058.0787013-CDS-S-ischiensis_contig9:262918..2630631695741058.0787013-CDS-S-ischiensis_contig9:262918..263063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 262919..263063 -
1622817363.0501788-CDS-S-ischiensis_contig9:264370..2645191622817363.0501788-CDS-S-ischiensis_contig9:264370..264519Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 264371..264519 -
1695741058.0885143-CDS-S-ischiensis_contig9:264370..2645191695741058.0885143-CDS-S-ischiensis_contig9:264370..264519Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 264371..264519 -
1622817363.0622506-CDS-S-ischiensis_contig9:264882..2650331622817363.0622506-CDS-S-ischiensis_contig9:264882..265033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 264883..265033 -
1695741058.0982728-CDS-S-ischiensis_contig9:264882..2650331695741058.0982728-CDS-S-ischiensis_contig9:264882..265033Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 264883..265033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20410.1prot_S-ischiensis_contig9.20410.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 259590..265033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20410.1

>prot_S-ischiensis_contig9.20410.1 ID=prot_S-ischiensis_contig9.20410.1|Name=mRNA_S-ischiensis_contig9.20410.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=389bp
PRHHAAPTPRACARDRPSPGRTTQERPHTDYLAPPVTDLRSPLREVPHKT
GHSNRTEMSDCKLALLPATDLLVGAIRSVDHLHPGATAGKVTAALHKLHP
EWSVNKKRVRKLLKGVRSQACTHNKLLNHVISGSGSAANATTPPADSPER
TTTSTAAGADNPAISAGAETCESHTQGEVEGSGVAGAGAGAGAGTASDAP
IGQLPAPVVPAPSPEGEAGPQMSGDGADVDEGGCVGVGVGEPGEGDASEE
EEDDDGSASGSSRSSGGGGTAPSSPYPSPSLAPAAVVAAEAAGVGGSVHL
PLTLQVEALPAAKAFAREAFAQEVLTGVEGVFPDDLEGVVVVNVEKELAL
AARTPITGTAGEDAGEGPEGFPANEGPASGGKGKGKGKA
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mRNA from alignment at S-ischiensis_contig9:259590..265033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20410.1 ID=mRNA_S-ischiensis_contig9.20410.1|Name=mRNA_S-ischiensis_contig9.20410.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5444bp|location=Sequence derived from alignment at S-ischiensis_contig9:259590..265033- (Schizocladia ischiensis KU_0333)
CCGAGGCATCACGCAGCACCAACACCAAGAGCTTGCGCGCGCGACAGACC
GAGCCCGGGTAGGACAACCCAGGAGAGGCCGCATACAGACTACCTGGCAC
CACCGGTGACCGATCTCCGGTCACCTCTCCGCGAAGTACCTCACAAAACA
GGTATGTCAGGTTAACAGCCGGGACAGGAGGAAGACCCCGCCACCACCGC
CCGCGGCCGTCATGTAGCAGTGCACGCCGCGACGAGGATAAATTGTAATG
GACAATGCGCACAGTTGGCGCCCACGGTCTGTAGCGTGGCAGGGGGCCGA
GGAGGCCCTCGCCTTTCGGGGGATCTCCAGTCCCGAGTTGCAGGCCCGAC
ACCATACCGCAGCGAAGCGGGCATGGACGACGCGGAGTAGTCCGTGCAGT
TCCTCACACTCCCTTTCCGGGCCTCCTCGGCCCTTGTTCTGTCGCCGGCC
GACCCGTGCACCGCACACCCCGCCGCAAACGGGACCTGCGGAACACGTGG
CAAACGTCGGACAGGCCACTCGAATCGAACGGAGATGTCCGACTGCAAGC
TGGCGCTCCTACCCGCCACCGATTTGCTGGTCGGCGCCATCCGGTCCGTG
GACCACCTCCACCCTGGTGCAACCGCGGGCAAGGTAACCGCTGCGCTCCA
CAAGCTGCACCCGGTGAGTGCGCGCTGACTTGGCAGTGGGGGATATTTGT
GTTGGGGCATTTGGGCAGTGATATGGGTGAGCACGGTCCATGTGCAGCTG
GTACTGATTACATTCCCGTGTGCACATGCCTGCATTGTGCGTGCAAGTGG
GTAGGCAGGTGCAGTATAGATGCCAACAATTGTACTTGACTTCTAACACG
CCGACGTACTCTACGTTCCAAAGATTCTTCAATACGATATGCTCGATTGC
GTGCGCTCCTCCAGCCCTCCCAGTGCAGATTCTCGCTAGTGCCTTGCCTT
ATTTTAACTGAAACCTCCTTTCTGCGTCTCTTGGCAGTCAAACGTGGCAG
AAGCGGGCAACCCTCCTATTTTTTTTCACACCAGTCTTCCCTTGGCAGCA
CCCCATGTTGCATTGTTGCTGGCTCTGCTCTCAAGATAGCCACGGTGCCG
CGAGACAATACCATGCTAAAAAAAGAAAGTGTGGAACAGTACTGCACCGT
ACGGCGTACGCGCGTAGATTCATTGCCCCGAGGCCGCGTGTTTTGCAGAT
GCGTCCCAAGTGTACACTGTATATGTAGAAATCAACGGTTGCTAACTGTG
TGCTTACGCCGCTCGGCCACCACTTTCATGCAGGCATTGCTTCGCTCCGA
GGGGAATTTTTTTGCCCGAAAGCAATGAGTACAAGTGCACCCCCTACCGA
GCACGCGGGGCGTACATTATTACCAGTGTTCCAATATTGTTGTGTGTTTG
TTGAGTACCCATTTTCCGGGACTAGGGACGTGGCTAGGAAGTTGTGGCTT
CTCATTCCCTTGTAAGGCACGCCCGGTTTTCACGGGGTCAGCGCTGCTGA
ACCTGTAGTGTAGGGCTGGATTCCAATAGTGCTTGTACTGCTGTAGCGTG
TAGGACCCTACTGTACAATTTTTTCCGAGTGTTGACATGTTTTGCCCGAC
GAAGATTGTCAGCGTTCGTGTTTCGTAGAGGGTATTGCTAGTATGTACTT
CGAAGTAGTAGAGTAGGCTTGACTGATATGCGTCACGTGCAATTTCATGG
CGCTGAGGGTAGGAGAAAGCAGTGCGACATAGCATCATTTCATGTGAGGC
CCATATGAAGCACTTGGCAGTAGTCAGTACTCACAGTTCTTTACATGGTA
TGTATGTACTCACATTGTGCTTGCCGTAGTCTCGATACCATTGACCACGC
GCCTCGGTTGAGGCGGAGCAGGTACTGTAGTAGTACGGAAGTACAATAGT
GTGTGGAACTGACGTGCTCCATGGGACTAACGCGATACGTTCGATGTGTG
GTGTGATGTGATACGAGCAGGAGTGGAGCGTGAACAAGAAGCGCGTCCGC
AAGCTGCTCAAGGGCGTGCGCAGCCAGGCATGCACCCACAACAAGCTCCT
CAATCACGTCATTAGCGGCAGCGGCAGCGCTGCCAATGCCACCACTCCTC
CTGCCGACAGTCCCGGTGTGTATGTGTGTGCATGCATGCATGCATGCATG
TGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCTTGTCTGTGTGGCATCATG
TGCACGTACACTTGTGTGCGCGTATGAGTATGCGTGTATGTACAGTCTAC
CACTACTAAGTAGTGTATGTAGTAGGCCTTGGCTCTGCCCGCTCGTTTCT
GTCGGTGAGTTGCCTTGGGTGCACAGCGTGCACGGACATGTGCAGTACAG
GAGAGTACTCGCACTGCTATACAATAGCACCGGATTACAGTACGTAGTAC
AGTACATAGTACAGTACATGAGCGCTACAGTGCGCGTGCGTGCATACTGC
CTGCATCTCGGGCGCTGAGATACCCCGTCCTGTGCATGCCACGGACCGTC
GGCCCAGCATACCTACAACCTGCTGGGCTGCCGGCAGTTACAGTAGTAGC
CCCGCAGGAAACAACAGCCACCACCACCACCACCACCACCACCACGGCAA
CGTCTACACACTCCCCGGACAGACCACAACCCTTAACCACCACCTCTAAC
ATGAACACCACCACAACACCACCACCACACGACACCACCACCGGCACCCC
CCAACCCCCGGCAGAACGGACCACCACATCCACCGCCGCCGGTGCCGACA
ACCCCGCAATCTCCGCTGGGGCGGAGACCTGTGAAAGCCACACCCAGGGC
GAAGTTGAGGGGAGCGGAGTTGCAGGGGCGGGTGCAGGCGCAGGCGCAGG
CACCGCCTCAGATGCTCCCATTGGGCAGCTGCCAGCGCCGGTGGTACCGG
CCCCTTCGCCTGAGGGAGAGGCAGGCCCCCAGATGAGCGGGGATGGGGCC
GATGTGGATGAAGGTGGGTGTGTGGGTGTGGGCGTTGGGGAGCCTGGCGA
GGGGGACGCCAGCGAGGAGGAGGAGGACGACGACGGCAGTGCCAGCGGGT
CCTCCAGGTAAAGATAGTGTGCTGTCATACTTCCAAGTTCTATATGTACT
CACATGGTGCTTGCCATAGTCCCAAGTACTTTGAAGTACATTCATTCTTG
TGTGCTGGACTTGGATGTACGTGTTTGGTACGTGTCGGCCTGGCCGCAGC
GAAGTGCCAGCATGCCCCATCCTGGCCTGGGTGGGGCGGATGGACCGATG
GCCAAATGGCCATCTGCTTCCAAGCATCGTTAGATTAGCCTTTGTGAACT
TGCGGTACGGTGCAGTTCCCTTCGTTTGTTCAAAATATGTAATAAATGTG
TTTGACGTGAATATATACACACCTGGGCGTGCCATCCAGGTACGTGTGCA
CTTCCGAAGTACTTGAAACCAAGCACATGGACACACACACACAACATGGA
GCTATGCACTCATTGACTTGTCTTGCGACACTACCTACCTTGCGGGCATT
CCCGTCAGCCCTAGGTAAGTCGAAACTTCGCGTATACTCTGCCCTCCGAC
AGGAGTAGTACATGCACATATACTATTGTGGTACCTGGTATTGTACAACA
TGTAGGTACTCTCCCACGCCTGACTTAACTCTTCACACGCAAACTCCCAG
GTCTTCGGGCGGTGGCGGCACGGCCCCCTCATCCCCGTACCCGTCCCCAT
CCCTAGCCCCGGCGGCGGTGGTGGCAGCGGAAGCAGCGGGGGTAGGCGGT
TCGGTCCATTTGCCGCTGACGCTCCAGGTGGAGGCATTGCCCGCTGCCAA
GGCATTTGCAAGGGAGGCATTTGCCCAGGAGGTAGGTACGCTACAGTACA
TATATATATATATCCAGGAGGTACGCAATAACACAGCAGGAAAGCTTTTC
ACAGACCCGTCGGCCCCAGTTGTACTGTAGACAGTATAAAACAGCTCTAC
ATTGCCGTGGTACTTAGTAGTAGTTTGCCCAGGAGGTAGGCTACAGGTAT
GCCACAGTAGGAAAGCTTTTCTCAGACCCGTTGGCCCCGGTTGTACTGTA
GACAGTGCCAAACAGCTCTGGTAGTAGTTTGCCCAGGAGGTACGCTACAG
TAGGAAAGCTTTTCGCAGACCCGTTGTCCCCAGTTGTACTATAGCAGTAG
TACTGTAGTGTGCGTGTACATCTCAACACAGTACTCCAAGTACAGTAGGT
GTGTTTGCCAGGCGGTACAAATACCAATTTTGGCCACCTGTCACGGGGCA
GGGGCACTATGCGTATACTACAGTAGTACTCAAGTAGTTGGATGTGGAGG
CCTTGGCCCAGGAGGCCCTGGAGGGTATGATGACATTTTTGTGGCCTGGT
CATCGCCCACAAGTGTACGGTTGCTCGCAGCTGCATCTTCCTCCTCGTGT
TCACTTCTCATCCAAACCCTCATTTCCCCACTGTAGTGTTGACCGGTGTG
GAAAGCGTTTTCCCTGATGACCTGGAAGGCGTGGTGGCGGTGGACGTCTC
TCACTTTTCATCCAAACCCTCGTTTCCCTACTGTAGGTGTTGACGGGTGT
GGAAGGTGTTTTCCCCGATGACCTGGAAGGCGTGGTGGTGGTGGACATCT
CTCACTTCTCATCCAAACCCTTTTCCCTACTTAGGTGTTGACGGGCGTGG
AAGCGTTTTCCCTGATGACCTGGAAGGCGTGGTGGTGGTGGATGTCTCTC
ACTTCTCATCCAAACCCTCTTTTCCCCAGGTGTTGACGGGCGTGGAAGGT
GTTTTCCCTGACGACCTGGAAGGCGTGGTGGTGGTGAACGTCGAGAAGGA
GCTGGCCCTGGCTGCCCGCACGCCCATCACTGGGACTGCGGGTGAAGGTA
TGTGTGCGTGTGTGGGTGCATGCGCGCGCGTGCGTGCCCTGCTTTGCTTG
TGCGCAGCAGGCACCCCAGGGGTGGTTGGTATGCCTAGTATAACATACCG
TAGTCGTCGGAGAGATCTTGCCTCCCCATGCCAATTTTCGGGAGAACTTT
TCTTGCCCAATACTGGTCGGATTCGCGCGGGAAACTCGGAAAATCTCCCT
CAGGACCTGGGGGAACTTCTCCGAGAGCTTTCAGGACAATTCAGGGCCTT
CCCGGCTAGAAATATTGCCCCGAAAATTGGCCTGTGGGGGCAAAATCTCC
CCGATGATTGCGGTACCCATCTCTCACACACGTGGCCGTTCATTGCATTC
GAGCCCGCCCTGTTCTCTCTCTCTCATGCACAAAATGTAGCGGGGAGCCG
CGCGGCAAGACGCCAATACAAGCCGCATGCCACCTATATCACTCAGCGCC
GTCCGTCACCACTAAGTTAGCGCAACGCACCATTGCAACGCGGGGGACGC
CCCATCCCCAGCAGACGCAGGAGAGGGGCCCGAGGGCTTCCCTGCAAATG
AGGGGCCCGCATCAGGGGGAAAGGGGAAGGGAAAGGGAAAGGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:259590..265033-

>mRNA_S-ischiensis_contig9.20410.1 ID=mRNA_S-ischiensis_contig9.20410.1|Name=mRNA_S-ischiensis_contig9.20410.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2334bp|location=Sequence derived from alignment at S-ischiensis_contig9:259590..265033- (Schizocladia ischiensis KU_0333)
CCGAGGCATCACGCAGCACCAACACCAAGAGCTTGCGCGCGCGACAGACC
GAGCCCGGGTAGGACAACCCAGGAGAGGCCGCATACAGACTACCTGGCAC
CACCGGTGACCGATCTCCGGTCACCTCTCCGCGAAGTACCTCACAAAACA
GCCGAGGCATCACGCAGCACCAACACCAAGAGCTTGCGCGCGCGACAGAC
CGAGCCCGGGTAGGACAACCCAGGAGAGGCCGCATACAGACTACCTGGCA
CCACCGGTGACCGATCTCCGGTCACCTCTCCGCGAAGTACCTCACAAAAC
AGGCCACTCGAATCGAACGGAGATGTCCGACTGCAAGCTGGCGCTCCTAC
CCGCCACCGATTTGCTGGTCGGCGCCATCCGGTCCGTGGACCACCTCCAC
CCTGGTGCAACCGCGGGCAAGGTAACCGCTGCGCTCCACAAGCTGCACCC
GGCCACTCGAATCGAACGGAGATGTCCGACTGCAAGCTGGCGCTCCTACC
CGCCACCGATTTGCTGGTCGGCGCCATCCGGTCCGTGGACCACCTCCACC
CTGGTGCAACCGCGGGCAAGGTAACCGCTGCGCTCCACAAGCTGCACCCG
GAGTGGAGCGTGAACAAGAAGCGCGTCCGCAAGCTGCTCAAGGGCGTGCG
CAGCCAGGCATGCACCCACAACAAGCTCCTCAATCACGTCATTAGCGGCA
GCGGCAGCGCTGCCAATGCCACCACTCCTCCTGCCGACAGTCCCGGAGTG
GAGCGTGAACAAGAAGCGCGTCCGCAAGCTGCTCAAGGGCGTGCGCAGCC
AGGCATGCACCCACAACAAGCTCCTCAATCACGTCATTAGCGGCAGCGGC
AGCGCTGCCAATGCCACCACTCCTCCTGCCGACAGTCCCGAACGGACCAC
CACATCCACCGCCGCCGGTGCCGACAACCCCGCAATCTCCGCTGGGGCGG
AGACCTGTGAAAGCCACACCCAGGGCGAAGTTGAGGGGAGCGGAGTTGCA
GGGGCGGGTGCAGGCGCAGGCGCAGGCACCGCCTCAGATGCTCCCATTGG
GCAGCTGCCAGCGCCGGTGGTACCGGCCCCTTCGCCTGAGGGAGAGGCAG
GCCCCCAGATGAGCGGGGATGGGGCCGATGTGGATGAAGGTGGGTGTGTG
GGTGTGGGCGTTGGGGAGCCTGGCGAGGGGGACGCCAGCGAGGAGGAGGA
GGACGACGACGGCAGTGCCAGCGGGTCCTCCAGAACGGACCACCACATCC
ACCGCCGCCGGTGCCGACAACCCCGCAATCTCCGCTGGGGCGGAGACCTG
TGAAAGCCACACCCAGGGCGAAGTTGAGGGGAGCGGAGTTGCAGGGGCGG
GTGCAGGCGCAGGCGCAGGCACCGCCTCAGATGCTCCCATTGGGCAGCTG
CCAGCGCCGGTGGTACCGGCCCCTTCGCCTGAGGGAGAGGCAGGCCCCCA
GATGAGCGGGGATGGGGCCGATGTGGATGAAGGTGGGTGTGTGGGTGTGG
GCGTTGGGGAGCCTGGCGAGGGGGACGCCAGCGAGGAGGAGGAGGACGAC
GACGGCAGTGCCAGCGGGTCCTCCAGGTCTTCGGGCGGTGGCGGCACGGC
CCCCTCATCCCCGTACCCGTCCCCATCCCTAGCCCCGGCGGCGGTGGTGG
CAGCGGAAGCAGCGGGGGTAGGCGGTTCGGTCCATTTGCCGCTGACGCTC
CAGGTGGAGGCATTGCCCGCTGCCAAGGCATTTGCAAGGGAGGCATTTGC
CCAGGAGGTCTTCGGGCGGTGGCGGCACGGCCCCCTCATCCCCGTACCCG
TCCCCATCCCTAGCCCCGGCGGCGGTGGTGGCAGCGGAAGCAGCGGGGGT
AGGCGGTTCGGTCCATTTGCCGCTGACGCTCCAGGTGGAGGCATTGCCCG
CTGCCAAGGCATTTGCAAGGGAGGCATTTGCCCAGGAGGTGTTGACGGGC
GTGGAAGGTGTTTTCCCTGACGACCTGGAAGGCGTGGTGGTGGTGAACGT
CGAGAAGGAGCTGGCCCTGGCTGCCCGCACGCCCATCACTGGGACTGCGG
GTGAAGGTGTTGACGGGCGTGGAAGGTGTTTTCCCTGACGACCTGGAAGG
CGTGGTGGTGGTGAACGTCGAGAAGGAGCTGGCCCTGGCTGCCCGCACGC
CCATCACTGGGACTGCGGGTGAAGACGCAGGAGAGGGGCCCGAGGGCTTC
CCTGCAAATGAGGGGCCCGCATCAGGGGGAAAGGGGAAGGGAAAGGGAAA
GGCAACGCAGGAGAGGGGCCCGAGGGCTTCCCTGCAAATGAGGGGCCCGC
ATCAGGGGGAAAGGGGAAGGGAAAGGGAAAGGCA
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