mRNA_S-ischiensis_contig9.20405.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20405.1
Unique NamemRNA_S-ischiensis_contig9.20405.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Match: D8LN63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN63_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.910e-28
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:  244 LEEVPDDMVDTIFTISDPETGSTIDCYAERFACIGGERYLVAYPKDDAVAIAFQEQGEIAPVPLDDVLMDSLFQVVEE---ELAPSGLTILRTPGTLTMRGLGEVESPYED 567
            LEEV D++      +  P+TG  + CYAER A +GGERYLVA+PKD AVAIAF E GE++PVP DD +MD LF + E    +L P G+T+LRTP TLT++GL E+    +D
Sbjct:   11 LEEVSDELASKPVALGCPKTGKELVCYAERIAVVGGERYLVAFPKDPAVAIAFDENGEVSPVPNDDPIMDELFPLAEACVADLGP-GVTLLRTPTTLTVQGLNELVDEAKD 120
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BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Match: D8LHY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.070e-12
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:  244 LEEVPDDMVDTIFTISDPETGST---IDCYAERFACIGGERYLVAYPKDDAVAIAF-QEQGEIAPVPLDDVLMDSLFQVVEEELAPSGLTILRTPGTLTMRG 537
            LE VP+D +D  +       G T   I+CYA+RFA +GG RY++ +P D AV++   +++G +  VPLD  LM+ L   ++ EL    + +  TP TLT++G
Sbjct:  124 LETVPEDKLDQAYVFRQERPGQTPRVIECYADRFAVVGGRRYMIGHPCDWAVSVCTPKDEGNVEAVPLDSELMEELLPGLQRELEAEDVHLFVTPITLTLQG 225
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN63_ECTSI3.910e-2853.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LHY2_ECTSI1.070e-1238.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:229267..230877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LN63
EggNOG free text desc.Protein of unknown function (DUF3727)
EggNOG OGs2B3Q5@1,2SC6V@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionProtein of unknown function DUF3727
Ec32 orthologEc-05_003660.1
Exons4
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20405.1prot_S-ischiensis_contig9.20405.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 229267..230877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.8287783-CDS-S-ischiensis_contig9:229266..2294261622817375.8287783-CDS-S-ischiensis_contig9:229266..229426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 229267..229426 -
1695741065.9876971-CDS-S-ischiensis_contig9:229266..2294261695741065.9876971-CDS-S-ischiensis_contig9:229266..229426Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 229267..229426 -
1622817375.8447754-CDS-S-ischiensis_contig9:229854..2299851622817375.8447754-CDS-S-ischiensis_contig9:229854..229985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 229855..229985 -
1695741066.002579-CDS-S-ischiensis_contig9:229854..2299851695741066.002579-CDS-S-ischiensis_contig9:229854..229985Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 229855..229985 -
1622817375.8552134-CDS-S-ischiensis_contig9:230280..2304561622817375.8552134-CDS-S-ischiensis_contig9:230280..230456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 230281..230456 -
1695741066.018278-CDS-S-ischiensis_contig9:230280..2304561695741066.018278-CDS-S-ischiensis_contig9:230280..230456Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 230281..230456 -
1622817375.867524-CDS-S-ischiensis_contig9:230675..2308771622817375.867524-CDS-S-ischiensis_contig9:230675..230877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 230676..230877 -
1695741066.034769-CDS-S-ischiensis_contig9:230675..2308771695741066.034769-CDS-S-ischiensis_contig9:230675..230877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 230676..230877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20405.1

>prot_S-ischiensis_contig9.20405.1 ID=prot_S-ischiensis_contig9.20405.1|Name=mRNA_S-ischiensis_contig9.20405.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=223bp
RSCILRCRFAPDMATCVPFVAVLAILALSGAWAFVPVPPSWHAPVREGAA
YAKTCGHPGWTSGWVGASGQGVRGVPLRAQGLEEVPDDMVDTIFTISDPE
TGSTIDCYAERFACIGGERYLVAYPKDDAVAIAFQEQGEIAPVPLDDVLM
DSLFQVVEEELAPSGLTILRTPGTLTMRGLGEVESPYEDADNWEDGEAEA
AVGQEIVAGSAGSAVDVSLVEEE
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mRNA from alignment at S-ischiensis_contig9:229267..230877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20405.1 ID=mRNA_S-ischiensis_contig9.20405.1|Name=mRNA_S-ischiensis_contig9.20405.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1611bp|location=Sequence derived from alignment at S-ischiensis_contig9:229267..230877- (Schizocladia ischiensis KU_0333)
CGAAGTTGCATTTTGCGGTGTAGATTCGCGCCAGATATGGCGACTTGTGT
GCCCTTTGTTGCCGTGCTGGCAATTTTGGCACTGTCGGGGGCATGGGCAT
TCGTACCAGTTCCACCATCATGGCATGCGCCGGTTAGGGAGGGGGCGGCC
TATGCAAAAACATGCGGGCATCCAGGCTGGACCAGTGGTTGGGTCGGCGC
AAGTGAGACGGCTGAGACGCACCAGCAAGTAGATGGGAGTTCCATTGGTG
AAAATTCGCTGGCGTACGACGCGCATGGCTGTGCTGCTCCCATGCTCTCC
AGTTGCACTGCTCCTATGCTCTCCAACGGCCGAGCGCACACGACCCCTCG
ACCGCCCACAACTGTATTGGGAACCTGTCGCCGCCCACGAACCCCCAATC
CATTGCCCGCCCTTACCACAGGCGGCCAAGGTGTACGAGGCGTTCCTCTC
CGCGCACAGGGCCTGGAGGAGGTTCCTGATGACATGGTGGACACGATATT
CACGATTTCGGACCCAGAAACGGGGTCGACCATCGACTGTTACGCGGAAA
GATTTGCATGTATTGGCGGCGAGAGATATCTCGTGGCCTACCCGAAGGTG
AGCCAGGCTGTTCCCACCTTGGCCGGGACAATGAGGTTACCGTTGTCCCC
TGCAGTACCGTTTCATATCTCTGGTTCGGCGGCAGCACTTGTACAGTAGG
TTGGTTGCCTCGCACGGCCTCCCGCGCCCGCCAAAGCCGTTACCCAGTAC
TACGGTATATAGCGCACGGGTCTTTGGTTGTCCGTGTGCGCACTCCCTTC
CCCATGTTCAGCAAATTGTCAACATGCAACTCACGGGGCGGTGAGTGATC
ACGCACGCTTGAAACCCCCACCCCTCCTGCCGCCGCACGCAGGACGATGC
TGTTGCAATAGCGTTTCAGGAACAAGGGGAGATCGCACCCGTCCCACTGG
ACGACGTCCTCATGGACAGCTTGTTTCAGGTGGTCGAGGAGGAACTTGCT
CCGTCAGGGCTCACCATTCTCCGGTAAGATACTCGGCTGGGATTTACGGG
GTGCTTGCGCTGTATATACCAATGTGGTAGGCGCGCTCGCTCTCTCTAGC
AGGTGCTGCATTGCACCAGGCGTGCATGACAATGAGCCGTCATTGCCTGC
TGCCGTGTATTTTCGATGCTTGCATTGTTTTCCAAGCGCGAAGCACGATG
CGACCCACTCTCCTGCGTGCAAGGATCAGTGGGTGTGGCGGACAAGTACG
CCGACCATGGCCGTTTTGCGGGGTGCACTACTAGTGATAAGTTACCAGGC
TTGAATCATTACCTGGGCGAGGTACAGTCCCACACATAGTACTCATATAT
GCGAGAGCTTGTCATAGCCCGGAGACCAGTGGCCGCGCGACCTCTCGTGA
GATTTGGAGAAATTCCCGGCCGCACGACAAAACAAAACGGATTCTTCGCA
GGACGCCGGGGACGTTGACAATGAGGGGATTGGGAGAGGTAGAGTCGCCA
TACGAGGACGCAGACAATTGGGAGGATGGTGAGGCCGAAGCGGCCGTGGG
CCAGGAAATCGTGGCGGGTTCAGCGGGGAGCGCGGTGGATGTTAGCCTTG
TGGAGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:229267..230877-

>mRNA_S-ischiensis_contig9.20405.1 ID=mRNA_S-ischiensis_contig9.20405.1|Name=mRNA_S-ischiensis_contig9.20405.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1338bp|location=Sequence derived from alignment at S-ischiensis_contig9:229267..230877- (Schizocladia ischiensis KU_0333)
CGAAGTTGCATTTTGCGGTGTAGATTCGCGCCAGATATGGCGACTTGTGT
GCCCTTTGTTGCCGTGCTGGCAATTTTGGCACTGTCGGGGGCATGGGCAT
TCGTACCAGTTCCACCATCATGGCATGCGCCGGTTAGGGAGGGGGCGGCC
TATGCAAAAACATGCGGGCATCCAGGCTGGACCAGTGGTTGGGTCGGCGC
AACGAAGTTGCATTTTGCGGTGTAGATTCGCGCCAGATATGGCGACTTGT
GTGCCCTTTGTTGCCGTGCTGGCAATTTTGGCACTGTCGGGGGCATGGGC
ATTCGTACCAGTTCCACCATCATGGCATGCGCCGGTTAGGGAGGGGGCGG
CCTATGCAAAAACATGCGGGCATCCAGGCTGGACCAGTGGTTGGGTCGGC
GCAAGCGGCCAAGGTGTACGAGGCGTTCCTCTCCGCGCACAGGGCCTGGA
GGAGGTTCCTGATGACATGGTGGACACGATATTCACGATTTCGGACCCAG
AAACGGGGTCGACCATCGACTGTTACGCGGAAAGATTTGCATGTATTGGC
GGCGAGAGATATCTCGTGGCCTACCCGAAGGCGGCCAAGGTGTACGAGGC
GTTCCTCTCCGCGCACAGGGCCTGGAGGAGGTTCCTGATGACATGGTGGA
CACGATATTCACGATTTCGGACCCAGAAACGGGGTCGACCATCGACTGTT
ACGCGGAAAGATTTGCATGTATTGGCGGCGAGAGATATCTCGTGGCCTAC
CCGAAGGACGATGCTGTTGCAATAGCGTTTCAGGAACAAGGGGAGATCGC
ACCCGTCCCACTGGACGACGTCCTCATGGACAGCTTGTTTCAGGTGGTCG
AGGAGGAACTTGCTCCGTCAGGGCTCACCATTCTCCGGACGATGCTGTTG
CAATAGCGTTTCAGGAACAAGGGGAGATCGCACCCGTCCCACTGGACGAC
GTCCTCATGGACAGCTTGTTTCAGGTGGTCGAGGAGGAACTTGCTCCGTC
AGGGCTCACCATTCTCCGGACGCCGGGGACGTTGACAATGAGGGGATTGG
GAGAGGTAGAGTCGCCATACGAGGACGCAGACAATTGGGAGGATGGTGAG
GCCGAAGCGGCCGTGGGCCAGGAAATCGTGGCGGGTTCAGCGGGGAGCGC
GGTGGATGTTAGCCTTGTGGAGGAGGAGGACGCCGGGGACGTTGACAATG
AGGGGATTGGGAGAGGTAGAGTCGCCATACGAGGACGCAGACAATTGGGA
GGATGGTGAGGCCGAAGCGGCCGTGGGCCAGGAAATCGTGGCGGGTTCAG
CGGGGAGCGCGGTGGATGTTAGCCTTGTGGAGGAGGAG
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