mRNA_S-ischiensis_contig9.20403.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20403.1
Unique NamemRNA_S-ischiensis_contig9.20403.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:218615..219477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size406
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20403.1prot_S-ischiensis_contig9.20403.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 218777..219477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.8835728-UTR-S-ischiensis_contig9:218614..2187761622817362.8835728-UTR-S-ischiensis_contig9:218614..218776Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 218615..218776 -
1695741057.9520903-UTR-S-ischiensis_contig9:218614..2187761695741057.9520903-UTR-S-ischiensis_contig9:218614..218776Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 218615..218776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817362.8965087-CDS-S-ischiensis_contig9:218776..2189051622817362.8965087-CDS-S-ischiensis_contig9:218776..218905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 218777..218905 -
1695741057.9663508-CDS-S-ischiensis_contig9:218776..2189051695741057.9663508-CDS-S-ischiensis_contig9:218776..218905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 218777..218905 -
1622817362.9073374-CDS-S-ischiensis_contig9:219363..2194771622817362.9073374-CDS-S-ischiensis_contig9:219363..219477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 219364..219477 -
1695741057.9767697-CDS-S-ischiensis_contig9:219363..2194771695741057.9767697-CDS-S-ischiensis_contig9:219363..219477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 219364..219477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20403.1

>prot_S-ischiensis_contig9.20403.1 ID=prot_S-ischiensis_contig9.20403.1|Name=mRNA_S-ischiensis_contig9.20403.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=81bp
HRRGRSQHRDVGPRTRRHVSAAVRGEATLVLKAPVRRQGGRQALRPAPLH
VGNLFLRRGAVAWGGRARAAKPFTAGEHWA*
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mRNA from alignment at S-ischiensis_contig9:218615..219477-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20403.1 ID=mRNA_S-ischiensis_contig9.20403.1|Name=mRNA_S-ischiensis_contig9.20403.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=863bp|location=Sequence derived from alignment at S-ischiensis_contig9:218615..219477- (Schizocladia ischiensis KU_0333)
CACCGGCGAGGGAGGAGCCAGCACAGGGACGTTGGGCCCAGAACTCGTCG
TCATGTGTCCGCAGCAGTACGGGGGGAGGCCACGCTAGTGCTGAAGGCAC
CCGTGCGACGACAGGTATTTCCGCGGCCGGCGGCCGTTGAATTTTTTGCG
TTGGGGGCGAGGCGGGGGAGGTGGTGCACCGAGGAGGGGGGAGGAGGGTA
GAGCCGCCATGAAATTCGGCCGACCGCGCCCAGCACGGGATTCCGGCAGC
TCTTAGGGCCAATGCGGTGTCGGCGGGCCCCAGTTCTCGGTTGGGAGCGT
GTGTACGAGTTGGCATTGCTCTCTTTTGACCCGGGCGGCCGGGTGCAAGA
GACGTACTTTGGGCATGCCGTGGCGGCGACAACGATTGCCAGAAGCGCTG
GGGACGGCCTCAAGATGATTAATCGCTCGGGCGGAACCTGTAAATAATCG
CATTCACGTAGTCTCACGCGCAGGGGCCTTTCGACAGCGTGGCTCAAAGT
TGTGCCCGCGTTACTTCTATTGCTGCAACTCTGGGCGCGGAGACCTAACC
CGCGCGCTTCCACATCGCCCAGGGGGGACGCCAAGCCCTGCGGCCGGCAC
CTTTGCACGTGGGCAACCTGTTCCTACGTCGTGGGGCGGTGGCATGGGGC
GGGAGAGCTCGGGCAGCCAAACCATTCACGGCAGGTGAACACTGGGCCTA
GACGGGGACGCCAGCGTGCGTGCAAGAACGTAAGGATTAGGCCGCTTCAG
GTACACGAGATCATGGAGGCGGCCGACTTGTCGGATCGAGAGGTGTGTGC
GATACTCTCGAGCCCTTCCCAGCAATACATGGTGAAACCGCATCCCAGGC
CAGGCGGCAGACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:218615..219477-

>mRNA_S-ischiensis_contig9.20403.1 ID=mRNA_S-ischiensis_contig9.20403.1|Name=mRNA_S-ischiensis_contig9.20403.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=486bp|location=Sequence derived from alignment at S-ischiensis_contig9:218615..219477- (Schizocladia ischiensis KU_0333)
CACCGGCGAGGGAGGAGCCAGCACAGGGACGTTGGGCCCAGAACTCGTCG
TCATGTGTCCGCAGCAGTACGGGGGGAGGCCACGCTAGTGCTGAAGGCAC
CCGTGCGACGACAGCACCGGCGAGGGAGGAGCCAGCACAGGGACGTTGGG
CCCAGAACTCGTCGTCATGTGTCCGCAGCAGTACGGGGGGAGGCCACGCT
AGTGCTGAAGGCACCCGTGCGACGACAGGGGGGACGCCAAGCCCTGCGGC
CGGCACCTTTGCACGTGGGCAACCTGTTCCTACGTCGTGGGGCGGTGGCA
TGGGGCGGGAGAGCTCGGGCAGCCAAACCATTCACGGCAGGTGAACACTG
GGCCTAGGGGGGACGCCAAGCCCTGCGGCCGGCACCTTTGCACGTGGGCA
ACCTGTTCCTACGTCGTGGGGCGGTGGCATGGGGCGGGAGAGCTCGGGCA
GCCAAACCATTCACGGCAGGTGAACACTGGGCCTAG
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