mRNA_S-ischiensis_contig9.20400.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI) HSP 1 Score: 324 bits (831), Expect = 1.220e-99 Identity = 168/229 (73.36%), Postives = 181/229 (79.04%), Query Frame = 1
Query: 100 ARDRLLGPTRRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHAQEV 786
AR+ LLGP R YAHAVL CP NLRWKVWLAG+RMELAAG CL AQRLL R FQEVP+KSKSHVFLEC RAR ETKSEWKVFLESVLLEIRA+DW+RAA EAQ AL++HSGAGRLWAVLVQLKQR SD AQQA+LKQALKEVPKSGEVWCEGARIHLNPLSK+F L TA KYL FA+QFTPQYGDSFMECLRL LL + LP A+ +
Sbjct: 536 ARNSLLGPCRSAYAHAVLTCPHNLRWKVWLAGARMELAAGNCLHAQRLLNRAFQEVPEKSKSHVFLECXXXXXXXXXXXXXXXXXXRARVETKSEWKVFLESVLLEIRANDWQRAATEAQEALKVHSGAGRLWAVLVQLKQRD-----SDQAQQASLKQALKEVPKSGEVWCEGARIHLNPLSKAFDLETAGKYLGFAVQFTPQYGDSFMECLRLGLLNDIFLPKARAI 759
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA) HSP 1 Score: 265 bits (677), Expect = 2.950e-77 Identity = 137/233 (58.80%), Postives = 169/233 (72.53%), Query Frame = 1
Query: 91 ITVARDRLLGPTRRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHAQEVV 789
I R LLG R+ Y A L P NLRWKVWLAG+R EL AG+ +A+ LL+R F+EVPDKSK+HVFLEC+RLEE+ G +L +AR E + EWKVFLESVLLE+RA +W RA +A+ AL +H+G GRLWA+LVQL R G G + L+QAL EVPKSGEVWCEGARIHL+P+S +F L A +YLDFAIQFTPQYGDSF+E LRL L+ Q++ P A+ V+
Sbjct: 925 IPAVRGELLGRCRQYYVDAALTAPSNLRWKVWLAGARTELGAGRVDVARALLRRAFREVPDKSKAHVFLECARLEEYVGXXXXXXSVLAQARVEARGEWKVFLESVLLEMRAGEWVRAIDQARSALSVHTGTGRLWAILVQL--RYLGGAGEQVR---VLRQALSEVPKSGEVWCEGARIHLSPVSFNFDLELAQRYLDFAIQFTPQYGDSFLELLRLTLVRQVIEPVARSVI 1152
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A6S8EA78_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EA78_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.520e-68 Identity = 128/220 (58.18%), Postives = 152/220 (69.09%), Query Frame = 1
Query: 127 RRCYAHAVLACPQNLRWKVWLAGSRMELA----AGKCLL-------AQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLL 753
R Y +VL CP NLRWKVWLAG R ELA K + AQ+LL R +VPDKS++ V LECSR+EE+ G + AREIL +AR ETK EWKVFLESV+LE+R + A EA+ AL IHSG GRLWA+LVQL G D Q+ ++ALK+VPKSGEVWCEGAR+HL+PLS F L TA +YL+FAIQFTPQYGDSF+E LR LL
Sbjct: 696 RAAYVQSVLRCPNNLRWKVWLAGVRTELANADSKNKLTVDNAGVQKAQKLLNRALMDVPDKSRAQVLLECSRVEEYIGKIDKAREILAKARKETKHEWKVFLESVMLEVRCGNRDGALKEAKSALEIHSGTGRLWAILVQLTHAH----GPD-QQRLVFREALKQVPKSGEVWCEGARVHLHPLSPHFDLETASRYLEFAIQFTPQYGDSFVEALRFHLL 910
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A4D9D155_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D155_9STRA) HSP 1 Score: 236 bits (603), Expect = 2.740e-67 Identity = 126/233 (54.08%), Postives = 153/233 (65.67%), Query Frame = 1
Query: 91 ITVARDRLLGPTRRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHAQEVV 789
I R LLG R+CY A L P NLRWKVWLAG+R EL AG+ A+ LL+R F EVPDKSK+H AR E + EWKVFLESVLLE+RA +W RA +A+ AL +H+G GRLWA+LVQL R G G + L+QAL EVPKSGEVWCEGARIHL+P+S +F L A +YLDFAIQFTPQYGDSF+E LRL L+ Q++ P A+ ++
Sbjct: 1275 IPAVRGELLGRCRQCYVDAALTAPSNLRWKVWLAGARTELGAGRVDFARALLRRAFCEVPDKSKAHXXXXXXXXXXXXXXXXXXXXXXXXARVEARGEWKVFLESVLLEMRAGEWARAIDQARSALSVHTGTGRLWAILVQL--RYLGGAGEQVR---VLRQALSEVPKSGEVWCEGARIHLSPVSFNFDLELAQRYLDFAIQFTPQYGDSFLELLRLTLVRQVIEPVARSII 1502
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7S4MSC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSC1_9STRA) HSP 1 Score: 224 bits (571), Expect = 1.750e-66 Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 1
Query: 127 RRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHAQEVVR 792
RR +A +L CP +L WKVWLAG RMEL AG+ A++L R VP+K ++ V LEC+RLEEF G+++ AR IL +AR S+WKV+LES+ LE+R RA AQ AL +HSG GRLWA LVQL+Q + AQ + LK+AL VPKSGEVWCEG R+HLNP +F L A+ +LDFA +FTPQYGDSF+E LRL ++ + + P A ++++
Sbjct: 66 RRSFAKTILTCPPSLCWKVWLAGGRMELMAGRTDEARQLFLRSHDVVPEKGRAAVMLECARLEEFAGDIELARAILSKARFNAGSDWKVWLESIFLEMRCGMRGRAIRLAQNALDVHSGTGRLWAALVQLRQPD-----GEAAQMSVLKRALWSVPKSGEVWCEGGRLHLNPFFPNFGLEEAELHLDFATKFTPQYGDSFLETLRLNIVLEQICPIANDMIK 282
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7S0GLS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLS1_9STRA) HSP 1 Score: 221 bits (563), Expect = 4.910e-65 Identity = 114/215 (53.02%), Postives = 147/215 (68.37%), Query Frame = 1
Query: 127 RRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLP 771
RR + A+L+CP NL WKVWLA RMEL AG+ +A++L R + VPDK +S V LEC+RLEEF +V+ AR IL +AR++ S+WK++LESV LE+R R+A AQ AL IHS GRLWA+LVQ++ ++ Q L +AL VPKSGEVWCE R+HLNP +F L A+ YL FA +FTPQYGDSF+E ++L LL LLLP
Sbjct: 204 RRSFVRAILSCPPNLCWKVWLASGRMELTAGRTSIARKLFMRAYNVVPDKGRSTVLLECARLEEFVDDVKLARAILCKARNDNDSDWKIWLESVSLELRCGRRRKAVELAQNALDIHSCTGRLWALLVQIRHED-----GEVKQSDVLIRALSSVPKSGEVWCEAGRLHLNPFVPTFDLDRAELYLMFATKFTPQYGDSFLETVKLELLKSLLLP 413
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7S0Q4B3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4B3_9EUKA) HSP 1 Score: 223 bits (568), Expect = 7.410e-65 Identity = 118/211 (55.92%), Postives = 144/211 (68.25%), Query Frame = 1
Query: 127 RRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQ 759
R Y +V C NLRWKVWL GSR EL + ++Q LL+R ++E P K+++ V LE SRL E CGNV+ AR++L AR + EWKVFLESVLLE+R+ RA EA+ AL +H G GRLWAVL+QL+ Q Q +QAL EVPKSGEVWCEGARI LNP S F+L A +LDFAI+FTPQYGDSF+E LRL+LL Q
Sbjct: 290 RAAYVKSVATCAANLRWKVWLGGSRTELCHSQFNVSQALLERAYEESPPKTRAIVMLEQSRLHELCGNVEQARKLLRGARKTNRQEWKVFLESVLLELRSQHVERALREARKALEVHRGTGRLWAVLIQLEHAQ-----GVHQQLRVFQQALLEVPKSGEVWCEGARICLNPFSDCFNLEAAHNFLDFAIEFTPQYGDSFIEYLRLQLLMQ 495
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7S1VNZ6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNZ6_9STRA) HSP 1 Score: 226 bits (576), Expect = 7.690e-65 Identity = 123/224 (54.91%), Postives = 155/224 (69.20%), Query Frame = 1
Query: 106 DRLLGPTRRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHA 777
D LL P R+ +A + C NL WKV LAG RMELAAG A++L R + VP+K K LECSRLEEF GNV AR IL ++R E S+WKV+LESVL+E+R + RA A+ AL+IH+G GRLWA LVQL+ ++ +D Q AALK+AL+ VPKSGEVWCEG R++LNP ++ F L A ++L FA +FTPQYGDSF+E LRL LL + LLP A
Sbjct: 354 DVLLEPCRKQFAMTTMTCQANLCWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTGRLWAALVQLRYSEE----TDETQYAALKKALRAVPKSGEVWCEGGRMNLNPFARCFDLDEARRHLFFATRFTPQYGDSFVESLRLELLEKWLLPVA 573
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7R9UFL8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFL8_9STRA) HSP 1 Score: 217 bits (553), Expect = 6.040e-64 Identity = 113/218 (51.83%), Postives = 155/218 (71.10%), Query Frame = 1
Query: 166 NLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSD--LAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHAQEVVRRRRESKQ 813
NLRWKVWLA +R EL G+ LA+ L++R +E+P K++ +LE SR+EEF G++++AR+IL AR E +EWK+FLESV+LE+R+ R A +A+ AL +H G GRLWA L+ L+ SD AQ A ++AL+EVPKSGEVW EGAR+HLNPLS+ F A ++L+FAI FTPQYGDSF+E +RLRL+ + LLP A + RR R +++
Sbjct: 1 NLRWKVWLAAARTELGVGRADLARLLVKRSMREIPPKARYMAWLEMSRIEEFVGDLESARQILCAARQEAVTEWKIFLESVMLELRSGHIREATLQAETALEVHRGTGRLWAALITLR-------ASDGVTAQAAVFRRALQEVPKSGEVWAEGARLHLNPLSQLFDPECAARFLEFAILFTPQYGDSFLELIRLRLVLRCLLPQALLLYRRGRHARE 211
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Match: A0A7S1YIW7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIW7_9STRA) HSP 1 Score: 226 bits (576), Expect = 1.130e-63 Identity = 123/224 (54.91%), Postives = 155/224 (69.20%), Query Frame = 1
Query: 106 DRLLGPTRRCYAHAVLACPQNLRWKVWLAGSRMELAAGKCLLAQRLLQRGFQEVPDKSKSHVFLECSRLEEFCGNVQAAREILERARSETKSEWKVFLESVLLEIRASDWRRAAWEAQCALRIHSGAGRLWAVLVQLKQRQQGKGGSDLAQQAALKQALKEVPKSGEVWCEGARIHLNPLSKSFHLPTADKYLDFAIQFTPQYGDSFMECLRLRLLTQLLLPHA 777
D LL P R+ +A + C NL WKV LAG RMELAAG A++L R + VP+K K LECSRLEEF GNV AR IL ++R E S+WKV+LESVL+E+R + RA A+ AL+IH+G GRLWA LVQL+ ++ +D Q AALK+AL+ VPKSGEVWCEG R++LNP ++ F L A ++L FA +FTPQYGDSF+E LRL LL + LLP A
Sbjct: 1214 DVLLEPCRKQFAMTTMTCQANLCWKVLLAGGRMELAAGNFEKARKLFHRAHRSVPEKGKVATLLECSRLEEFIGNVDRARAILTKSRIEITSDWKVWLESVLVEVRGGEKDRAIDLAKRALQIHTGTGRLWAALVQLRYSEE----TDETQYAALKKALRAVPKSGEVWCEGGRMNLNPFARCFDLDEARRHLFFATRFTPQYGDSFVESLRLELLEKWLLPVA 1433 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20400.1 >prot_S-ischiensis_contig9.20400.1 ID=prot_S-ischiensis_contig9.20400.1|Name=mRNA_S-ischiensis_contig9.20400.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=277bp SASAPAGGGEPPSGEAVIVQGQEAEGEPLPITVARDRLLGPTRRCYAHAVback to top mRNA from alignment at S-ischiensis_contig9:204582..208073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20400.1 ID=mRNA_S-ischiensis_contig9.20400.1|Name=mRNA_S-ischiensis_contig9.20400.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3492bp|location=Sequence derived from alignment at S-ischiensis_contig9:204582..208073- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:204582..208073- >mRNA_S-ischiensis_contig9.20400.1 ID=mRNA_S-ischiensis_contig9.20400.1|Name=mRNA_S-ischiensis_contig9.20400.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1662bp|location=Sequence derived from alignment at S-ischiensis_contig9:204582..208073- (Schizocladia ischiensis KU_0333)back to top |