mRNA_S-ischiensis_contig9.20391.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.080e-59 Identity = 118/207 (57.00%), Postives = 135/207 (65.22%), Query Frame = 3
Query: 339 QLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGA-GFGTTPPWMDSRWEVGPADVAGRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
Q++GQRLVV V+ WD +P GHYV SLGPVGE+SSE AALLVE A+F PFSF+ALA LP P T + R GFG P W DS W V +DVAGRR+LR R SVDPPGCQDIDDAMH++ P G + E+GVHIADVTRFV+A +PLDREARAR TTVYL H R+DMLP LLSSD
Sbjct: 456 QISGQRLVVMVDGWDVGHVFPFGHYVTSLGPVGEVSSEAAALLVECEASFQPFSFNALASLP------LVPNPPKESQKPRDALLPPATLAERERPEDGFGKAPRWQDSGWRVQESDVAGRRDLRKERAMSVDPPGCQDIDDAMHVKRKPNG------KLEIGVHIADVTRFVEADSPLDREARARATTVYLVHRRIDMLPALLSSD 650
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A836CJZ0_9STRA (DIS3-like exonuclease 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ0_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.660e-50 Identity = 107/210 (50.95%), Postives = 127/210 (60.48%), Query Frame = 3
Query: 336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH--LRVFSVDPPGCQDIDDAMHIRELPRGSGSGG-RRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
++L GQRL+V+V+ W+ +P+GHYVR+LGP G+ +E+AALL+E AAF PFS ALACLP RG W DS W V D R++LR RVFSVDPPGCQDIDDAMH+RE+ GSG RR EVGVHIADV RFV G+PLDREAR RGTT YL+H R DMLP LL+ D
Sbjct: 16 SRLMGQRLLVQVDAWERGMRFPSGHYVRALGPAGDAETEVAALLLEHDAAFPPFSARALACLPR-------------------------------RG--------WRDSGWTVPEEDSTARKDLRGGGYRVFSVDPPGCQDIDDAMHVREI---GGSGMVRRLEVGVHIADVARFVAHGSPLDREARQRGTTTYLSHRRFDMLPALLAGD 183
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE) HSP 1 Score: 185 bits (469), Expect = 8.460e-49 Identity = 111/214 (51.87%), Postives = 129/214 (60.28%), Query Frame = 3
Query: 324 VLVHTQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG---RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
+ + T+ QRLVV V+ WD +P+GHYV SLGPVGE+SSE AALLVE A+F PFSF+ALA LP T S R A PP + E P D G RR+LR R SVDPPGCQDIDDAMH++ P G + E+GVHIADVTRFV+A +PLDREARAR TTVYL H R+DMLP LLSSD
Sbjct: 51 IRIKTRQLAQRLVVTVDGWDVGQVFPSGHYVTSLGPVGEVSSEAAALLVECEASFQPFSFNALASLPLVPNPPKVRRKRPVFS----------TESQKPRDA---LLPPATLAERE-RPEDGFGKAPRRDLRRERAMSVDPPGCQDIDDAMHVKRKPNG------KLEIGVHIADVTRFVEADSPLDREARARATTVYLVHRRIDMLPALLSSD 244
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A453J2J3_AEGTS (RNB domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J2J3_AEGTS) HSP 1 Score: 154 bits (390), Expect = 2.810e-41 Identity = 87/207 (42.03%), Postives = 110/207 (53.14%), Query Frame = 3
Query: 342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG--RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
L +R++V V+ WD S YP+GHYVR++G +G+ +E +L+E+ PFS LACLP W + P DVA R++LRH+RVFSVDPPGC+DIDDA+H LP G+ FEVGVHIADVT FV GTPLD EA R T+VYL R+DMLP L+ D
Sbjct: 128 LLNKRIIVAVDSWDVMSRYPSGHYVRTIGDIGDKETETEVVLIENDINTRPFSTQVLACLPPLP--------------------------------------------WTLSPEDVANPNRQDLRHVRVFSVDPPGCRDIDDALHCTPLPNGN------FEVGVHIADVTNFVHPGTPLDEEASQRATSVYLVGQRIDMLPKPLTED 284
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A1V9YYU9_9STRA (DIS3-like exonuclease 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYU9_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.090e-40 Identity = 97/208 (46.63%), Postives = 115/208 (55.29%), Query Frame = 3
Query: 336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRHL-RVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
T+L RL V ++ W DSFYP GHYV+ LGPVG+L +E+AALLV+ FS ALACLP P+TR W + A++A RR+LR RVFSVDPPGCQDIDDAM +R LP G +E+GVHIADV FV A + LDR+AR R TTVYL R DMLP LLS D
Sbjct: 386 TELVDHRLTVAIDAWPLDSFYPAGHYVQVLGPVGDLETEVAALLVQHATHAARFSERALACLPDVGDVDWDAVAICDTSRRPRV--------PLTR-------------EWCMPAAEIAARRDLRASHRVFSVDPPGCQDIDDAMSVRRLPNG------HWELGVHIADVGYFVAADSALDRDARHRATTVYLVDRRFDMLPVLLSGD 566
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A2V0P7U5_9CHLO (Exosome complex exonuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7U5_9CHLO) HSP 1 Score: 161 bits (407), Expect = 1.390e-40 Identity = 91/207 (43.96%), Postives = 112/207 (54.11%), Query Frame = 3
Query: 342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVA--GRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
L QR+VV V+ WDSDS YP+GHYVRSLG +G +E LL+E+ PF+ + C+P + WEV AD+A R +LRHL V SVDPPGC+DIDDA+H+RELP G+ EVGVHIADVT F+K GTP+D EA AR TT YL R+DMLP L+ D
Sbjct: 435 LMSQRIVVAVDGWDSDSAYPHGHYVRSLGEIGTKDTETEVLLIENDINTAPFAPAVYECVP--------------------------------------------EQPWEVAAADLADPNREDLRHLPVCSVDPPGCRDIDDALHVRELPNGN------LEVGVHIADVTHFLKPGTPMDDEAAARATTTYLVGRRIDMLPKALTED 591
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A1W0A8G9_9STRA (DIS3-like exonuclease 1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8G9_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.460e-40 Identity = 95/216 (43.98%), Postives = 120/216 (55.56%), Query Frame = 3
Query: 312 LRNPVLVHTQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRHL-RVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
+R L +L QRL + ++ W DSFYP GHYV+ LGPVG L +E+ ALLV+ FS SALACLP P+TR W++ ++ RR+LR+ RVFSVDPPGCQDIDDAM I +LP G+ +E+GVHIADV+ FV+A + LD+EA+ R TTVYL R DMLP LLS D
Sbjct: 383 VRMRTLNAAELVDQRLTILIDDWALDSFYPAGHYVQILGPVGNLETEIQALLVQHAVHASRFSESALACLPDVNDVKWDDVAICDTSRRPRV--------PLTR-------------EWQIPTDELQNRRDLRNTHRVFSVDPPGCQDIDDAMSITQLPNGN------YELGVHIADVSHFVEADSSLDKEAQHRATTVYLVDRRYDMLPVLLSGD 571
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A0X3PRS6_SCHSO (DIS3-like exonuclease 1 n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PRS6_SCHSO) HSP 1 Score: 160 bits (405), Expect = 2.400e-40 Identity = 92/218 (42.20%), Postives = 119/218 (54.59%), Query Frame = 3
Query: 336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH-----------LRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
TQL +R +VR++RWD++S YP+GH+V+SLGP+G+L +E +LVE G PF+ + L L S D +W+V P +VA RR+LR VFS+DPPGCQD+DDA+ +R LP + G RR ++GVHIADVT FVKAG LD EAR R T+VYL R DMLP LLS D
Sbjct: 442 TQLAKERFIVRIDRWDTNSNYPHGHFVQSLGPIGDLETETQTILVEHGLLHRPFTDAQLQELKSYA----------------------------------------SDRKWKVDPKEVANRRDLRPPSVSGNKKSEGTLVFSIDPPGCQDVDDALSVRWLP-ANAEGRRRIQLGVHIADVTYFVKAGGNLDAEARRRSTSVYLADRRYDMLPGLLSGD 618
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A183TB91_SCHSO (DIS3-like exonuclease 1 n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TB91_SCHSO) HSP 1 Score: 160 bits (405), Expect = 2.760e-40 Identity = 92/218 (42.20%), Postives = 119/218 (54.59%), Query Frame = 3
Query: 336 TQLTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAGRRELRH-----------LRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
TQL +R +VR++RWD++S YP+GH+V+SLGP+G+L +E +LVE G PF+ + L L S D +W+V P +VA RR+LR VFS+DPPGCQD+DDA+ +R LP + G RR ++GVHIADVT FVKAG LD EAR R T+VYL R DMLP LLS D
Sbjct: 467 TQLAKERFIVRIDRWDTNSNYPHGHFVQSLGPIGDLETETQTILVEHGLLHRPFTDAQLQELKSYA----------------------------------------SDRKWKVDPKEVANRRDLRPPSVSGNKKSEGTLVFSIDPPGCQDVDDALSVRWLP-ANAEGRRRIQLGVHIADVTYFVKAGGNLDAEARRRSTSVYLADRRYDMLPGLLSGD 643
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Match: A0A6P4A3C1_ZIZJJ (exosome complex exonuclease RRP44 homolog A isoform X2 n=15 Tax=rosids TaxID=71275 RepID=A0A6P4A3C1_ZIZJJ) HSP 1 Score: 158 bits (400), Expect = 1.130e-39 Identity = 88/207 (42.51%), Postives = 111/207 (53.62%), Query Frame = 3
Query: 342 LTGQRLVVRVERWDSDSFYPNGHYVRSLGPVGELSSELAALLVESGAAFDPFSFSALACLPSXXXXXXXXXXXXXXXXXXXXXXXPGTSSPVTRGAGFGTTPPWMDSRWEVGPADVAG--RRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGGRRFEVGVHIADVTRFVKAGTPLDREARARGTTVYLTHTRMDMLPTLLSSD 956
L +R+VV V+ WD S YP+GHY+R++G +G+ +E +L+E+ PFS LACLP W V P D+ R++LRHLRVFSVDPPGC+DIDDA+H LP G+ FEVGVHIADVT FV+ GTPLD EA RGT+VYL R+DMLP L+ D
Sbjct: 395 LLDKRIVVAVDSWDRLSRYPSGHYIRTIGEIGDRDTETEVVLIENDINSRPFSSQVLACLPPLP--------------------------------------------WSVSPEDLTNPIRQDLRHLRVFSVDPPGCKDIDDALHCTSLPNGN------FEVGVHIADVTNFVQPGTPLDEEATQRGTSVYLVERRIDMLPKPLTED 551 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20391.1 >prot_S-ischiensis_contig9.20391.1 ID=prot_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp MDSRWEVGPADVAGRRELRHLRVFSVDPPGCQDIDDAMHIRELPRGSGSGback to top mRNA from alignment at S-ischiensis_contig9:176933..180856+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20391.1 ID=mRNA_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3924bp|location=Sequence derived from alignment at S-ischiensis_contig9:176933..180856+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:176933..180856+ >mRNA_S-ischiensis_contig9.20391.1 ID=mRNA_S-ischiensis_contig9.20391.1|Name=mRNA_S-ischiensis_contig9.20391.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:176933..180856+ (Schizocladia ischiensis KU_0333)back to top |