|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-05_003780.1 |
| Exons | 3 |
| Model size | 280 |
| Cds size | 276 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817362.5676-CDS-S-ischiensis_contig9:35681..35789 | 1622817362.5676-CDS-S-ischiensis_contig9:35681..35789 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 35682..35789 - |
| 1695741057.637809-CDS-S-ischiensis_contig9:35681..35789 | 1695741057.637809-CDS-S-ischiensis_contig9:35681..35789 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 35682..35789 - |
| 1622817362.5786018-CDS-S-ischiensis_contig9:37100..37196 | 1622817362.5786018-CDS-S-ischiensis_contig9:37100..37196 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 37101..37196 - |
| 1695741057.6528978-CDS-S-ischiensis_contig9:37100..37196 | 1695741057.6528978-CDS-S-ischiensis_contig9:37100..37196 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 37101..37196 - |
| 1622817362.5890577-CDS-S-ischiensis_contig9:37538..37610 | 1622817362.5890577-CDS-S-ischiensis_contig9:37538..37610 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 37539..37610 - |
| 1695741057.66876-CDS-S-ischiensis_contig9:37538..37610 | 1695741057.66876-CDS-S-ischiensis_contig9:37538..37610 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 37539..37610 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20383.1 >prot_S-ischiensis_contig9.20383.1 ID=prot_S-ischiensis_contig9.20383.1|Name=mRNA_S-ischiensis_contig9.20383.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=92bp
ATADGAQDELLQEQRELEAKAAKEAQAEEEAAKKRAEENEPDPFTMTLED
RKLYDGYFKKLDKDKDGKLSRTEAEPLLKKTGMEAESLDRVW back to topmRNA from alignment at S-ischiensis_contig9:35680..37610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20383.1 ID=mRNA_S-ischiensis_contig9.20383.1|Name=mRNA_S-ischiensis_contig9.20383.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1931bp|location=Sequence derived from alignment at S-ischiensis_contig9:35680..37610- (Schizocladia ischiensis KU_0333)
GCGACAGCGGATGGCGCGCAAGACGAGCTTCTGCAGGAGCAGCGGGAGCT
AGAGGCTAAGGCGGCAAAGGAGGTAGGAGGCACGCAGTGTGTAAGTACAA
TTGTATACCCCATGTCATGTTGTCCCGCACCTCAAGACTGTCGCTTGTTC
CTCGCAGGGAGGGCTGACTGCGCGGAGGTGCCGCCATATTGTAGCCTCGC
GCACGGTGCAGGAAGCCTATGCATTTTGCTGAATAGTCGTCTTATTCTAT
TGCTGAAGTGAACCAAGTAGCCCATGAACGACGCCCGCCGGGGCGATCAG
TTTGGCTGGGTTTTATTTGCTCCTTCTGACACGTGCACATATCGACACAC
ACACGACACATACCCACACGCACCCGCTTGTTTGTCTTCTTGCAAAAAAC
AATTGGCACTGCAGGCGCAGGCTGAGGAAGAGGCGGCCAAGAAGCGGGCA
GAGGAGAACGAGCCTGACCCCTTCACCATGACCCTGGAGGACAGAAAGCT
GTATGACGGGGTATGTTGCTGTGCAAAATAAGGAAGGGCCACTGTTGAGG
TCTTTAGTGACGTGGCCTGCACCTCGCCCTGTGTTGTTCCTGTTAATACT
GTGCACAAGCCATATGGGACTACGGGAAGTTCTTTTTCGACCAAGTGCCC
TTCATGTTCGTTGAGCTCCATTGCAGGTTGGGCAACTTTTATCATGATAG
GGCGAGGGCTCAATTGCAACGAAAAATACTCGTTCCCAAGCCTCTCGTCT
TGTTTGTGTTTTCCCAACCTGCTGTTCAGTCAGGAAGAGTTCAACTGCCC
GTTATTCTTTGTTTCCTGTACTGTCGCTGTTGCTATCTCTCGTCTCCCTG
CAAGTGACACCCAATGCTTGGCTCAGCTTCCCTCCAAACTCTGCCATAGC
ACTGGCTGTACGGCGCATTGATATTGGCATAGACAGCGCGTGTCAATACT
GCGGTGCTTGTACTTCTCTGCTGGTGGTGATGAAATGCAGTACTTCGAAG
TACTTGGAAGTATACGGGATCTCATTCTGGCTATCCTCTCGGCCAGCACA
CTGTACGGTACCGTTCGGCACGCACTAAGTAGAGTAGCCTTCAATGCCTA
CAGTGCAGTGTTGTCGTACATCCGGAAGATTGTGCAATTGGCCCACACCT
GCCTACTGTCCCTCCGTGTCTTGCCCCTGGCAACCCGTACAGAGATGCAG
TTTGCTCCCTAGCATATCCCCACACGGACATTTGGGCAGTGCCTTGAAGA
ACTCAACGAAGACCTGTAGTGTATTGTACTGCATCACATAGCAAACCTGC
TGCCAGGCTGGCCTGCCTAATCCTCAAACGGAGCGCATGCGCGAGCATCT
ACTGTTGCAGTAGTGTGCACCGTTGTGCGCACGTGTACCTGCGCGCTTCA
GTGCGTACGTGTGCTTGTGTACTCCTGTTCTTGCACACGTTCGTTGCATG
TGTGCGTGCATGCACGCGTGTATGTGTCCATCTGTCCGTCATTTTTTATG
TGTTGATTCATGTAAATTGTAAGGAGGTAAAATCGCATGCGTGTGAGATT
GAGTGTCCTCGTAATAGTGGCTATCCCATTTAAGAATTGAGTGTTCTTGT
ATCACTAGTAGTGGCTATCACAGCAAAGAACTACAACAGTGTTTATGCGT
ATCGGTGTGTGTCGTGCATGTGTGTGTGTGTCCATCTGCACTCGTCCGTC
ATTGTTTATGCGTGTCGGTGTGTGCGCGCGTGTGTGTATGCGTGCGTGTG
TGTGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTG
TGTGTGCGCGTGCGTGAGCAGTACTTCAAGAAGCTGGACAAGGACAAGGA
TGGAAAGCTGTCCAGGACGGAGGCGGAGCCGCTGCTGAAAAAGACCGGCA
TGGAGGCAGAGTCCTTGGATCGGGTGTGGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:35680..37610- >mRNA_S-ischiensis_contig9.20383.1 ID=mRNA_S-ischiensis_contig9.20383.1|Name=mRNA_S-ischiensis_contig9.20383.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=552bp|location=Sequence derived from alignment at S-ischiensis_contig9:35680..37610- (Schizocladia ischiensis KU_0333)
GCGACAGCGGATGGCGCGCAAGACGAGCTTCTGCAGGAGCAGCGGGAGCT
AGAGGCTAAGGCGGCAAAGGAGGCGACAGCGGATGGCGCGCAAGACGAGC
TTCTGCAGGAGCAGCGGGAGCTAGAGGCTAAGGCGGCAAAGGAGGCGCAG
GCTGAGGAAGAGGCGGCCAAGAAGCGGGCAGAGGAGAACGAGCCTGACCC
CTTCACCATGACCCTGGAGGACAGAAAGCTGTATGACGGGGCGCAGGCTG
AGGAAGAGGCGGCCAAGAAGCGGGCAGAGGAGAACGAGCCTGACCCCTTC
ACCATGACCCTGGAGGACAGAAAGCTGTATGACGGGTACTTCAAGAAGCT
GGACAAGGACAAGGATGGAAAGCTGTCCAGGACGGAGGCGGAGCCGCTGC
TGAAAAAGACCGGCATGGAGGCAGAGTCCTTGGATCGGGTGTGGTACTTC
AAGAAGCTGGACAAGGACAAGGATGGAAAGCTGTCCAGGACGGAGGCGGA
GCCGCTGCTGAAAAAGACCGGCATGGAGGCAGAGTCCTTGGATCGGGTGT
GG back to top
|