mRNA_S-ischiensis_contig9.20379.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20379.1
Unique NamemRNA_S-ischiensis_contig9.20379.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.080e-7
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   90 DGLRTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTGEE 218
            D  R  +SG L+RC PVFS SS+TVFCACSS++ G SV+TGE+
Sbjct:   69 DETRAVLSGCLFRCSPVFSPSSDTVFCACSSSVLGVSVETGEQ 111
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BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Match: D7G8M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.470e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:   99 RTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTGEE 218
            R  +SG L+RC PVFS SS+ VFCACSS++ G SV+TGE+
Sbjct:   36 RAVLSGSLFRCSPVFSPSSDAVFCACSSSVLGVSVETGEQ 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD90_9PHAE4.080e-762.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8M6_ECTSI1.470e-662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:24292..26191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-00_011050.1
Exons3
Model size638
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20379.1prot_S-ischiensis_contig9.20379.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 24337..26129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.3665168-UTR-S-ischiensis_contig9:24291..243361622817374.3665168-UTR-S-ischiensis_contig9:24291..24336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 24292..24336 -
1695741064.8509471-UTR-S-ischiensis_contig9:24291..243361695741064.8509471-UTR-S-ischiensis_contig9:24291..24336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 24292..24336 -
1622817374.4160354-UTR-S-ischiensis_contig9:26129..261911622817374.4160354-UTR-S-ischiensis_contig9:26129..26191Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 26130..26191 -
1695741064.899562-UTR-S-ischiensis_contig9:26129..261911695741064.899562-UTR-S-ischiensis_contig9:26129..26191Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 26130..26191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.377927-CDS-S-ischiensis_contig9:24336..244731622817374.377927-CDS-S-ischiensis_contig9:24336..24473Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 24337..24473 -
1695741064.8617737-CDS-S-ischiensis_contig9:24336..244731695741064.8617737-CDS-S-ischiensis_contig9:24336..24473Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 24337..24473 -
1622817374.389214-CDS-S-ischiensis_contig9:24855..251601622817374.389214-CDS-S-ischiensis_contig9:24855..25160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 24856..25160 -
1695741064.8721006-CDS-S-ischiensis_contig9:24855..251601695741064.8721006-CDS-S-ischiensis_contig9:24855..25160Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 24856..25160 -
1622817374.4002173-CDS-S-ischiensis_contig9:26040..261291622817374.4002173-CDS-S-ischiensis_contig9:26040..26129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 26041..26129 -
1695741064.8834753-CDS-S-ischiensis_contig9:26040..261291695741064.8834753-CDS-S-ischiensis_contig9:26040..26129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 26041..26129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20379.1

>prot_S-ischiensis_contig9.20379.1 ID=prot_S-ischiensis_contig9.20379.1|Name=mRNA_S-ischiensis_contig9.20379.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
MAGTLGNSMDGLRTTISGKLYRCPPVFSESSETVFCACSSAIQGRSVDTG
EERFRLLGHSKDVTAMIFLPGATASGGREEGTQRAKDSRDRLASAAMDGT
LRVWDVSVVLGVPEVGLPFNCGRFGWRQWGEGGCGRKPLPVCLGNGAANP
CHVPGSRRQRCGQCNSGSAPGDHRPQ*
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mRNA from alignment at S-ischiensis_contig9:24292..26191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20379.1 ID=mRNA_S-ischiensis_contig9.20379.1|Name=mRNA_S-ischiensis_contig9.20379.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1900bp|location=Sequence derived from alignment at S-ischiensis_contig9:24292..26191- (Schizocladia ischiensis KU_0333)
CTCAGACGTGGGAGGCGGGGGGGGGCAGCGGCCGAGCGATCTTAGCTCGC
CTTGCCGCTGACATGGCCGGTACCCTGGGCAACTCCATGGATGGCCTGCG
AACGACGATTTCGGGAAAGCTCTACCGCTGCCCTCCAGTCTTCAGCGAGA
GGTGAGGACGAGTCAAACAGGGAACGGTGTTGCCATGACTGGCCAAAGGC
TTCCTGGCCCGGGGGTCCCCTAGCTCATCGGCTCGGTGCCCTATGATGTG
CCCCCTCTGGGCTTAAAAGTTCAACTTTTGTGCCTGTGTTGGGCAATGGG
TGTGCGCAAGGTGCTGCAGTTGCTGCACCTTGATGCACTTGTTGCATCGT
AGCACCCCGTGCTTGGTTTTTAGGTCTTCACGTTCGTGTAGCTACTGTTG
ACAATGCGATGACAGTCCGCTGACCCCCTCCCCCTCCCGGGATGGTTTTG
CAAGTGAAAGCCACGCCCTTGCAGCACATGATGAATGGTGTTGGTGCTGA
CCTCCTGGTGCAGTGTAGGGGTTGCGGCCGAGGCTATCCCACGTGGAGGC
AACTGCCCCTGGCCTTCCGCCCCTGCACCGTCTGTTGCCGCCGGGCCTTT
ACTTGCCCAAGGCCAATCCAACACACTTTATTACTGCGCAGGCCTCTGGC
AGTGCAAGAAAACAAAGCAATTGCCAGCAAGACACAAAACGGTTGTAATT
TGCCTTACTACACAAGAAAACAAAGCGATTGCCAGCAAGACACAAAACGT
TTCTCATTCACCTTCCTACATACTTTACCACCTGACTGACCCAGTTTTCG
AAACCCTAGCTGCCATCTCCTAACGCTGCGCCGTCCGTCCACCTGTCATG
TGTGGCCTACTGGGTGCACAGCTCCGAGACAGTCTTCTGCAAAACGATTG
TCATTCGCCTTACTACATAGTAGTACTTTATCACCTGACTGGCTCAGTTT
TTGAAACCGTGGTTGCTGTCGCCTAACGCCGCGCCGTCCGCCCGCCTCTG
TCACATGTGGCCTACTGGGTACAATGCACAGCTCCGAGACAGTCTTCTGC
GCCTGCAGCTCGGCCATCCAGGGGCGAAGCGTAGACACCGGGGAGGAGCG
CTTCCGCCTGCTGGGCCACAGCAAAGATGTAACCGCCATGATATTCCTTC
CCGGGGCTACTGCTTCCGGGGGAAGGGAGGAGGGGACCCAGAGGGCCAAG
GATTCTCGCGATCGCCTGGCTTCTGCTGCAATGGACGGCACCCTCCGGGT
CTGGGACGTGTCTGTCGTGTTGGGGGTGCCCGAGGTGGGTTTGCCGTTTA
ACTGTGGGCGTTTTGGCTGGAGGCAATGGGGTGAAGGCATAGTACAAGAC
AGTGTGCGACGTGGGGAAGCGGGCTACTTACAGTGATACCTGCTGTACTC
ATACAACATGCTGTGCTACTGTATTGAACCAAGTGCGGTTTTGGTTAACC
AATGTAGGTTAAAGAGGGCATTAGGAAACAGACGGCTATTGTTATATACT
GACTTGTGCAGTACACTACTGTAGCGGGTAGAGGTTGAAGGTTAACTCTT
AGTTGAAGGTTTCTTGCTGCAAAGTGTAGCACACCTTGCCTAACGCTGGG
GGAAGAAAGTTAGTCACGACGAACAACGTTTCCGGTACGATACAAAGCAG
CTAACGGGACCTCCCCCACCCCCCGTTCGGCCCATGTCACGCCCGTGCAC
TGTCAACCCTGTGTACAGGAGGATGCGGACGCAAACCGCTGCCTGTTTGT
CTTGGAAATGGGGCAGCCAATCCATGCCATGTTCCCGGTTCCCGGCGACA
AAGATGCGGGCAGTGCAACAGTGGCAGTGCTCCTGGTGACCACCGTCCCC
AATAAGAGCAAGCGTGGCAAGGAGACGGGCCGCCGTTTGCTAGGACTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:24292..26191-

>mRNA_S-ischiensis_contig9.20379.1 ID=mRNA_S-ischiensis_contig9.20379.1|Name=mRNA_S-ischiensis_contig9.20379.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1062bp|location=Sequence derived from alignment at S-ischiensis_contig9:24292..26191- (Schizocladia ischiensis KU_0333)
ATGGCCGGTACCCTGGGCAACTCCATGGATGGCCTGCGAACGACGATTTC
GGGAAAGCTCTACCGCTGCCCTCCAGTCTTCAGCGAGAGATGGCCGGTAC
CCTGGGCAACTCCATGGATGGCCTGCGAACGACGATTTCGGGAAAGCTCT
ACCGCTGCCCTCCAGTCTTCAGCGAGAGCTCCGAGACAGTCTTCTGCGCC
TGCAGCTCGGCCATCCAGGGGCGAAGCGTAGACACCGGGGAGGAGCGCTT
CCGCCTGCTGGGCCACAGCAAAGATGTAACCGCCATGATATTCCTTCCCG
GGGCTACTGCTTCCGGGGGAAGGGAGGAGGGGACCCAGAGGGCCAAGGAT
TCTCGCGATCGCCTGGCTTCTGCTGCAATGGACGGCACCCTCCGGGTCTG
GGACGTGTCTGTCGTGTTGGGGGTGCCCGAGGTGGGTTTGCCGTTTAACT
GTGGGCGTTTTGGCTGGAGGCAATGGGGTGAAGCTCCGAGACAGTCTTCT
GCGCCTGCAGCTCGGCCATCCAGGGGCGAAGCGTAGACACCGGGGAGGAG
CGCTTCCGCCTGCTGGGCCACAGCAAAGATGTAACCGCCATGATATTCCT
TCCCGGGGCTACTGCTTCCGGGGGAAGGGAGGAGGGGACCCAGAGGGCCA
AGGATTCTCGCGATCGCCTGGCTTCTGCTGCAATGGACGGCACCCTCCGG
GTCTGGGACGTGTCTGTCGTGTTGGGGGTGCCCGAGGTGGGTTTGCCGTT
TAACTGTGGGCGTTTTGGCTGGAGGCAATGGGGTGAAGGAGGATGCGGAC
GCAAACCGCTGCCTGTTTGTCTTGGAAATGGGGCAGCCAATCCATGCCAT
GTTCCCGGTTCCCGGCGACAAAGATGCGGGCAGTGCAACAGTGGCAGTGC
TCCTGGTGACCACCGTCCCCAATAAGAGGATGCGGACGCAAACCGCTGCC
TGTTTGTCTTGGAAATGGGGCAGCCAATCCATGCCATGTTCCCGGTTCCC
GGCGACAAAGATGCGGGCAGTGCAACAGTGGCAGTGCTCCTGGTGACCAC
CGTCCCCAATAA
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